
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/LUAD-TP/3143009/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD-TP/3132696/1.GDAC_clinicalDataPicker.Finished/LUAD-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=395, in cluster file=472, common to both=389
[1]  80 389
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               49               340 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               49               340 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              151               238 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              151               238 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
               46               343 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               46               343 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               38               351 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               38               351 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               10               379 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               10               379 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               23               366 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               23               366 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               27               362 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               27               362 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                9               380 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                9               380 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
              145               244 
      5P GAIN CNV 5P GAIN WILD-TYPE 
              145               244 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               45               344 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               45               344 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               59               330 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               59               330 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               15               374 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               15               374 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
              132               257 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              132               257 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               94               295 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               94               295 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               49               340 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               49               340 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              123               266 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              123               266 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               12               377 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               12               377 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                5               384 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                5               384 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                43                346 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                43                346 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                23                366 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                23                366 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                32                357 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                32                357 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                44                345 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                44                345 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                49                340 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                49                340 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                40                349 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                40                349 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                14                375 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                14                375 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                41                348 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                41                348 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                10                379 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                10                379 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                53                336 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                53                336 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                35                354 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                35                354 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                23                366 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                23                366 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                67                322 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                67                322 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                38                351 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                38                351 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                23                366 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                23                366 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 6                383 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 6                383 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                19                370 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                19                370 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
                52                337 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                52                337 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                67                322 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                67                322 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                355 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                355 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                15                374 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                15                374 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               18               371 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               18               371 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               26               363 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               26               363 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               10               379 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               10               379 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
                5               384 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                5               384 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                3               386 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                3               386 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
               77               312 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               77               312 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               47               342 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               47               342 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
               35               354 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               35               354 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               42               347 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               42               347 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               12               377 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               12               377 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               50               339 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               50               339 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               32               357 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               32               357 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               86               303 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               86               303 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
               11               378 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               11               378 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               12               377 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               12               377 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
               98               291 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               98               291 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               12               377 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               12               377 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
              117               272 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              117               272 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               99               290 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               99               290 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                27                362 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                27                362 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                33                356 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                33                356 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                27                362 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                27                362 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                24                365 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                24                365 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                34                355 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                34                355 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                21                368 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                21                368 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                88                301 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                88                301 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                42                347 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                42                347 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                81                308 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                81                308 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                31                358 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                31                358 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                51                338 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                51                338 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                97                292 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                97                292 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                16                373 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                16                373 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                67                322 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                67                322 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                95                294 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                95                294 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
               101                288 
      19P LOSS CNV 19P LOSS WILD-TYPE 
               101                288 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                58                331 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                58                331 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                52                337 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                52                337 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                21                368 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                21                368 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                54                335 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                54                335 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                79                310 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                79                310 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               10               379 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               10               379 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 389 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
         133          574          581          400          529          103 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
         480          400           97          246          311          253 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
         196          189          140          106          498          208 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
           9          102          302          236           95          165 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
          82         1938           NA         1110           NA          298 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
         162          153           50          557           NA          531 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
         535          418          259           98          255          202 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
         246          135          114           76         2318           NA 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
          NA           NA         1081         1421          428          999 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
         268          896           NA         1314          457          369 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 
         395          150            1           NA           NA         2174 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
        1485          455          785          297         1499          245 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
         282          267         1091         2369          653          257 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
         460          285          135          373          349           NA 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
          NA           NA           NA           NA           NA         1015 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
          NA          255         1068          970          418          701 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
        1178         1479         1374           87            2          992 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
          24           NA         1238           NA           28         1475 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
          NA           NA           NA           67           NA           NA 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
        1826           NA         1233         2161         1170           18 
TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
          34           NA            4           95           40           39 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
          31           31           24           54           19           16 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
         197           21            3           21           92            6 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
          26            4           15          215           43          227 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
           9            3          146          212           15           48 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
          49           65          105           33           31           29 
TCGA-55-A490 TCGA-55-A491 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
          48           NA            1           28            5          161 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
        2093           NA           NA           NA          540         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
         628         1189         1685         1126           NA         2550 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
           3          926          507         1202          223           30 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 
          60           18           62           18           NA           27 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
          21          422          154          186          690          414 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
         129          230          184           70           89          382 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
          99           76          128           61         1599          711 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
         911          617          467           14           40          122 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 
          38          621          519           NA           NA           NA 
TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        1093           NA         1201          760           NA           NA 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
          NA           NA         1220          678          214           NA 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        6812           NA           NA           NA           NA           NA 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-80-5607 
          NA          327          881           NA          994           NA 
TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 
          NA           NA          420           NA           NA           11 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-86-7953 TCGA-86-7954 TCGA-86-7955 
          27            7           NA           34           NA           14 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8056 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
          19           10           NA           13           24           43 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8281 TCGA-86-8358 
          26           23           21           16           NA           19 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
          26           34           44           33           17           15 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
          NA           NA           10           30           39           37 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
          NA            1           39           35           11           NA 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
         819          127           28           31          297          127 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
         185           34            2          163           21           40 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
         132          963         1435         1476         1331          263 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
         181           NA           22          106          181           NA 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
         146           15          250          427          458           44 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
         169          153          113          287          282          238 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
         212           76          116            6          621 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=84,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=225,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=86,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=19,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "TOBACCOSMOKINGHISTORYINDICATOR"        
[12] "YEAROFTOBACCOSMOKINGONSET"             
[13] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
149  61  57  16 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 389 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=12, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 80 169  22  16 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 80 169  22  16 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 80 169  22  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 80 169  22  16 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
172  58  51   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  172    58    52 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
172  58  51   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  172    58    52 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
149  61  57  16 
[1] "table(vv)"
vv
  I  II III  IV 
149  61  57  16 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
149  61  57  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
149  61  57  16 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=86, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=55, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN CNV        33  12
  1P GAIN WILD-TYPE 231  73
      1P GAIN CNV 1P GAIN WILD-TYPE 
               45               304 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               12                73 
$`1P GAIN CNV`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4632 
       29.95        30.02        25.02         4.96         0.99        44.61 
TCGA-44-2655 TCGA-44-2659 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 TCGA-44-7672 
       18.87        17.39         2.70        16.41        18.87        13.74 
TCGA-49-4501 TCGA-50-5944 TCGA-50-6591 TCGA-55-1592 TCGA-55-6980 TCGA-55-6983 
       46.72        12.26         3.88        23.05         2.20        60.03 
TCGA-55-7281 TCGA-55-7573 TCGA-55-8514 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.59         0.13         6.97         0.16         5.29        68.81 
TCGA-62-A46O TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 TCGA-69-7980 TCGA-69-8253 
       47.77        56.81        44.38        13.87        12.56         3.25 
TCGA-71-6725 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7155 
        2.01        15.35         4.01        27.16        19.27        38.50 
TCGA-78-7161 TCGA-78-7535 TCGA-78-7633 TCGA-86-8074 TCGA-86-8279 TCGA-86-8280 
        7.04        31.20        32.68         0.79         0.69         0.53 
TCGA-86-8585 TCGA-91-6847 TCGA-95-7039 
        1.12        26.93         1.12 

$`1P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 
       35.28        11.64         5.19        26.30         4.37        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        3.12         5.42        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
        5.33         5.03         1.64        18.31        17.46        17.59 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12         9.37         4.44        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
        5.46         7.76        45.34        32.71        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       71.05        38.47         1.12         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
        0.03         0.92        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.93         2.50         4.21        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28         0.46         1.32         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
      163.10         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        28.96        10.55        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8358 TCGA-86-8359 
        0.43         1.41         0.85         0.76         0.62         0.85 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      1P GAIN CNV 1P GAIN WILD-TYPE 
             0.13              0.03 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            68.81            223.96 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            13.87              7.79 
[1] "0.1 - 68.8 (13.9)" "0.0 - 224.0 (7.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV"       "1P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV         27   22
  1P GAIN WILD-TYPE  184  156
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  FEMALE          27               184
  MALE            22               156
D1V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P GAIN CNV                                1
  1P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P GAIN CNV                                       9
  1P GAIN WILD-TYPE                                70
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN CNV                                                       30
  1P GAIN WILD-TYPE                                                213
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P GAIN CNV                                                0
  1P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P GAIN CNV                                                   3
  1P GAIN WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P GAIN CNV                                    0
  1P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P GAIN CNV                                        1
  1P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P GAIN CNV                                  0                             3
  1P GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P GAIN CNV                                                   1
  1P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1P GAIN CNV                                       1
  1P GAIN WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1P GAIN CNV                                  0
  1P GAIN WILD-TYPE                            3
D1V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN CNV        12  20   4   1
  1P GAIN WILD-TYPE  68 149  18  15
D1V6, multiclass
    clus
vv   1P GAIN CNV 1P GAIN WILD-TYPE
  T1          12                68
  T2          20               149
  T3           4                18
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  1P GAIN CNV        23  13     1
  1P GAIN WILD-TYPE 149  45    51
D1V7, multiclass
       clus
vv      1P GAIN CNV 1P GAIN WILD-TYPE
  N0             23               149
  N1             13                45
  N2+N3           1                51
                   vv
clus                 M0  M1  MX
  1P GAIN CNV        26   3   7
  1P GAIN WILD-TYPE 176  13  56
D1V8, multiclass
    clus
vv   1P GAIN CNV 1P GAIN WILD-TYPE
  M0          26               176
  M1           3                13
  MX           7                56
                   vv
clus                  I  II III  IV
  1P GAIN CNV        18  14   1   3
  1P GAIN WILD-TYPE 131  47  56  13
D1V9, multiclass
     clus
vv    1P GAIN CNV 1P GAIN WILD-TYPE
  I            18               131
  II           14                47
  III           1                56
  IV            3                13
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          1   48
  1P GAIN WILD-TYPE   19  321
     clus
vv    1P GAIN CNV 1P GAIN WILD-TYPE
  NO            1                19
  YES          48               321
D1V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P GAIN CNV                                                14
  1P GAIN WILD-TYPE                                          86
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P GAIN CNV                                            8              9
  1P GAIN WILD-TYPE                                     69             53
                   vv
clus                LIFELONG NON-SMOKER
  1P GAIN CNV                         5
  1P GAIN WILD-TYPE                  31
D1V12, multiclass
                                             clus
vv                                            1P GAIN CNV 1P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          14                86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                8                69
  CURRENT SMOKER                                        9                53
  LIFELONG NON-SMOKER                                   5                31
D1V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN CNV        31   3   0   2
  1P GAIN WILD-TYPE 202   6   4  12
D1V14, multiclass
    clus
vv   1P GAIN CNV 1P GAIN WILD-TYPE
  R0          31               202
  R1           3                 6
  R2           0                 4
  RX           2                12

Clustering(2) Variable = 1q gain
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN CNV       105  31
  1Q GAIN WILD-TYPE 159  54
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              136               213 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               31                54 
$`1Q GAIN CNV`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4415 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
       38.07        14.01         2.96        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4625 TCGA-38-4629 
        4.96         0.99         2.04         0.46        47.61        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2659 TCGA-44-2668 TCGA-44-5645 
       44.61        26.30        18.87        17.39         8.09         6.84 
TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        7.76         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
        9.80         1.64        18.87        17.59        13.74         8.52 
TCGA-44-A47A TCGA-44-A47F TCGA-49-4486 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 
        6.64         8.09        76.21        28.57        46.72        32.84 
TCGA-49-6742 TCGA-49-6743 TCGA-50-5931 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.02        12.13         8.78        12.26        11.47         3.88 
TCGA-53-7813 TCGA-55-1592 TCGA-55-6642 TCGA-55-6970 TCGA-55-6972 TCGA-55-6980 
       13.74        23.05        32.61        15.25        48.49         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       60.03        24.99         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.28         1.78         0.62         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8092 TCGA-55-8094 TCGA-55-8301 TCGA-55-8510 TCGA-55-8514 
        0.69         0.85         0.13         1.41         7.46         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Z TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DG 
        0.49         1.58         0.95         0.03         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 TCGA-64-1680 
       68.81        47.77        19.53        39.22        56.81        37.02 
TCGA-64-1681 TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 
       44.38         1.97         0.59         0.89        13.87         5.06 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         7.56         2.93        12.56         3.25 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 
        4.01         1.25        20.42        27.16        19.27        35.93 
TCGA-78-7150 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 
       21.86        32.09         5.88        40.11         7.04        88.11 
TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-86-8054 TCGA-86-8074 
       31.20        53.33        10.75        32.68         0.62         0.79 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-A4D0 
        0.85         0.69         0.53         0.85         1.12         0.99 
TCGA-91-6828 TCGA-91-6847 TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 TCGA-95-7947 
        1.22        26.93         0.92         1.12         5.36         1.32 
TCGA-97-7547 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-8179 TCGA-99-8032 
       47.18         8.65         5.95         0.59         0.49         1.45 
TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-L9-A443 
        5.56         3.72         9.44         3.81 

$`1Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 
       26.01        24.00        15.02         1.02         2.96         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        5.95         8.68        85.32        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       11.64         5.19         4.37        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 
        9.93         3.12         5.42         5.33         5.03        18.31 
TCGA-44-7670 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       17.46         3.22         8.38         4.44         3.75         2.50 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       28.11        12.66        35.54        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       29.75        43.20        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
       15.12         9.37         4.44        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       31.89        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48        40.70         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
        7.76        45.34        32.71        40.54        71.05        38.47 
TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 TCGA-55-8089 
        1.32         1.02         1.02         0.79         0.53         3.02 
TCGA-55-8090 TCGA-55-8097 TCGA-55-8299 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.20         0.49         7.07         0.30         0.10         4.80 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 
        1.61         2.14         3.45         1.08         1.02         1.58 
TCGA-55-A493 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 
        0.92        17.75        20.65        39.09        55.40        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7974 
        0.59         2.04         0.69         6.12        22.68         6.05 
TCGA-69-7978 TCGA-69-8254 TCGA-69-8255 TCGA-73-4659 TCGA-73-4666 TCGA-73-7499 
        2.30         2.50         4.21        23.38        20.28        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
      163.10         5.65        20.58        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       38.50        22.29       104.15       223.96         8.48        26.53 
TCGA-78-7536 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
        8.02        28.96        10.55        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 
        0.23         1.12         0.46         0.33         0.43         1.41 
TCGA-86-8278 TCGA-86-8358 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.76         0.62         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.33         1.28        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         4.18         1.02         9.76         4.18         6.08 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.07         0.69         4.34        31.66        48.53        43.76 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.72         3.48         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
       14.04        15.06         5.03         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         0.20        20.42 

      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             0.03              0.03 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
            88.11            223.96 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             7.66              8.22 
[1] "0.0 - 88.1 (7.7)"  "0.0 - 224.0 (8.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         78   73
  1Q GAIN WILD-TYPE  133  105
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  FEMALE          78               133
  MALE            73               105
D2V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q GAIN CNV                                6
  1Q GAIN WILD-TYPE                          5
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q GAIN CNV                                      32
  1Q GAIN WILD-TYPE                                47
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN CNV                                                       88
  1Q GAIN WILD-TYPE                                                155
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q GAIN CNV                                                0
  1Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q GAIN CNV                                                   8
  1Q GAIN WILD-TYPE                                             9
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q GAIN CNV                                    1
  1Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q GAIN CNV                                        2
  1Q GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q GAIN CNV                                  0                            10
  1Q GAIN WILD-TYPE                            2                             8
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q GAIN CNV                                                   2
  1Q GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1Q GAIN CNV                                       2
  1Q GAIN WILD-TYPE                                 2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1Q GAIN CNV                                  0
  1Q GAIN WILD-TYPE                            3
D2V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN CNV        33  57   9   8
  1Q GAIN WILD-TYPE  47 112  13   8
D2V6, multiclass
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  T1          33                47
  T2          57               112
  T3           9                13
  T4           8                 8
                   vv
clus                 N0  N1 N2+N3
  1Q GAIN CNV        71  22    11
  1Q GAIN WILD-TYPE 101  36    41
D2V7, multiclass
       clus
vv      1Q GAIN CNV 1Q GAIN WILD-TYPE
  N0             71               101
  N1             22                36
  N2+N3          11                41
                   vv
clus                 M0  M1  MX
  1Q GAIN CNV        69   7  29
  1Q GAIN WILD-TYPE 133   9  34
D2V8, multiclass
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  M0          69               133
  M1           7                 9
  MX          29                34
                   vv
clus                 I II III IV
  1Q GAIN CNV       62 24  12  8
  1Q GAIN WILD-TYPE 87 37  45  8
D2V9, multiclass
     clus
vv    1Q GAIN CNV 1Q GAIN WILD-TYPE
  I            62                87
  II           24                37
  III          12                45
  IV            8                 8
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV          5  146
  1Q GAIN WILD-TYPE   15  223
     clus
vv    1Q GAIN CNV 1Q GAIN WILD-TYPE
  NO            5                15
  YES         146               223
D2V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q GAIN CNV                                                38
  1Q GAIN WILD-TYPE                                          62
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q GAIN CNV                                           35             20
  1Q GAIN WILD-TYPE                                     42             42
                   vv
clus                LIFELONG NON-SMOKER
  1Q GAIN CNV                        12
  1Q GAIN WILD-TYPE                  24
D2V12, multiclass
                                             clus
vv                                            1Q GAIN CNV 1Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          38                62
  CURRENT REFORMED SMOKER FOR > 15 YEARS               35                42
  CURRENT SMOKER                                       20                42
  LIFELONG NON-SMOKER                                  12                24
D2V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN CNV        90   6   0   6
  1Q GAIN WILD-TYPE 143   3   4   8
D2V14, multiclass
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  R0          90               143
  R1           6                 3
  R2           0                 4
  RX           6                 8

Clustering(3) Variable = 2p gain
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN CNV        30   9
  2P GAIN WILD-TYPE 234  76
      2P GAIN CNV 2P GAIN WILD-TYPE 
               39               310 
      2P GAIN CNV 2P GAIN WILD-TYPE 
                9                76 
$`2P GAIN CNV`
TCGA-05-4420 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-50-5946 TCGA-53-7624 
       29.95        35.28        44.61        17.46        11.47        35.11 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 
       23.05        38.73        48.62        15.25         0.53         6.48 
TCGA-55-A494 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-69-7764 TCGA-69-7973 
        0.16        39.09        37.02        83.84        13.61         7.56 
TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 TCGA-78-7145 TCGA-78-7149 TCGA-78-7150 
       12.56         1.32         4.01        27.16        35.93        21.86 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-86-7711 
       38.50       223.96        26.53        10.75        32.68         0.89 
TCGA-86-7955 TCGA-86-8054 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-97-7547 
        0.46         0.62        41.33         1.28         0.36        47.18 
TCGA-97-8179 TCGA-L9-A443 TCGA-L9-A444 
        0.49         3.81         0.20 

$`2P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       31.89        13.74        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        42.48        40.70         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.79         1.78         0.62         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        55.40        44.38         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 
       22.68         4.24         6.05         2.30         2.93         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28        15.35         0.46         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 
      163.10         5.65        19.27        20.58        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       19.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      104.15         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       28.96        10.55        13.81         0.36         0.23         1.12 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.22         0.03         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 
        5.36         0.69         1.32         4.34        31.66        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         5.36         4.80         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MN-A4N4 
        7.82         6.97         2.50        20.42 

      2P GAIN CNV 2P GAIN WILD-TYPE 
             0.16              0.03 
      2P GAIN CNV 2P GAIN WILD-TYPE 
           223.96            163.10 
      2P GAIN CNV 2P GAIN WILD-TYPE 
            17.46              7.61 
[1] "0.2 - 224.0 (17.5)" "0.0 - 163.1 (7.6)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-MN-A4N4 
"2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-MN-A4N4 
"2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-MN-A4N4 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV         19   27
  2P GAIN WILD-TYPE  192  151
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  FEMALE          19               192
  MALE            27               151
D3V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P GAIN CNV                                2
  2P GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P GAIN CNV                                      11
  2P GAIN WILD-TYPE                                68
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN CNV                                                       27
  2P GAIN WILD-TYPE                                                216
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P GAIN CNV                                                0
  2P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P GAIN CNV                                                   2
  2P GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P GAIN CNV                                    1
  2P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P GAIN CNV                                        0
  2P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P GAIN CNV                                  0                             3
  2P GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P GAIN CNV                                                   0
  2P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2P GAIN CNV                                       0
  2P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2P GAIN CNV                                  0
  2P GAIN WILD-TYPE                            3
D3V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN CNV         6  27   1   3
  2P GAIN WILD-TYPE  74 142  21  13
D3V6, multiclass
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  T1           6                74
  T2          27               142
  T3           1                21
  T4           3                13
                   vv
clus                 N0  N1 N2+N3
  2P GAIN CNV        21   9     7
  2P GAIN WILD-TYPE 151  49    45
D3V7, multiclass
       clus
vv      2P GAIN CNV 2P GAIN WILD-TYPE
  N0             21               151
  N1              9                49
  N2+N3           7                45
                   vv
clus                 M0  M1  MX
  2P GAIN CNV        24   5   7
  2P GAIN WILD-TYPE 178  11  56
D3V8, multiclass
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  M0          24               178
  M1           5                11
  MX           7                56
                   vv
clus                  I  II III  IV
  2P GAIN CNV        16   9   7   5
  2P GAIN WILD-TYPE 133  52  50  11
D3V9, multiclass
     clus
vv    2P GAIN CNV 2P GAIN WILD-TYPE
  I            16               133
  II            9                52
  III           7                50
  IV            5                11
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV          2   44
  2P GAIN WILD-TYPE   18  325
     clus
vv    2P GAIN CNV 2P GAIN WILD-TYPE
  NO            2                18
  YES          44               325
D3V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P GAIN CNV                                                16
  2P GAIN WILD-TYPE                                          84
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P GAIN CNV                                            7             12
  2P GAIN WILD-TYPE                                     70             50
                   vv
clus                LIFELONG NON-SMOKER
  2P GAIN CNV                         2
  2P GAIN WILD-TYPE                  34
D3V12, multiclass
                                             clus
vv                                            2P GAIN CNV 2P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          16                84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                7                70
  CURRENT SMOKER                                       12                50
  LIFELONG NON-SMOKER                                   2                34
D3V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN CNV        29   2   0   3
  2P GAIN WILD-TYPE 204   7   4  11
D3V14, multiclass
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  R0          29               204
  R1           2                 7
  R2           0                 4
  RX           3                11

Clustering(4) Variable = 2q gain
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN CNV        23   8
  2Q GAIN WILD-TYPE 241  77
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               31               318 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                8                77 
$`2Q GAIN CNV`
TCGA-35-5375 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-53-7624 TCGA-55-1592 
        8.68        35.28        44.61        17.46        35.11        23.05 
TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-55-8514 TCGA-55-8620 
       38.73        15.25         0.53         6.48         6.97         2.14 
TCGA-55-A494 TCGA-64-1680 TCGA-67-3771 TCGA-69-7764 TCGA-69-7973 TCGA-69-7980 
        0.16        37.02         1.97        13.61         7.56        12.56 
TCGA-73-4675 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 TCGA-78-7167 
        1.32        35.93        21.86        38.50       223.96        88.11 
TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 TCGA-97-7547 TCGA-97-8179 
       26.53        10.75        32.68         0.36        47.18         0.49 
TCGA-L9-A444 
        0.20 

$`2Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        8.38        31.89        13.74        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
        0.07        32.61         0.79        42.48        40.70         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 
        1.02         1.02         0.79         1.78         0.62         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
        6.12        22.68         4.24         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       20.58        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7535 
       40.11        22.29         7.04       104.15         8.48        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 
        8.02        53.33        28.96        10.55        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 
        3.48         5.95         5.36         4.80         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N4 
        9.27         7.82         6.97         2.50         3.81        20.42 

      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             0.16              0.03 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
           223.96            163.10 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
            15.25              7.76 
[1] "0.2 - 224.0 (15.2)" "0.0 - 163.1 (7.8)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-MN-A4N4 
"2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-MN-A4N4 
"2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV"       "2Q GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "2Q GAIN CNV"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-MN-A4N4 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV         18   20
  2Q GAIN WILD-TYPE  193  158
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  FEMALE          18               193
  MALE            20               158
D4V4, continuous
[1] "Remove cluster labels:" "2Q GAIN CNV"           
clus
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                2                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7914        TCGA-64-1677        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-69-7974        TCGA-71-6725        TCGA-73-4659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-86-7955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q GAIN CNV                                1
  2Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q GAIN CNV                                       8
  2Q GAIN WILD-TYPE                                71
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN CNV                                                       24
  2Q GAIN WILD-TYPE                                                219
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q GAIN CNV                                                0
  2Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q GAIN CNV                                                   1
  2Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q GAIN CNV                                    0
  2Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q GAIN CNV                                        0
  2Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q GAIN CNV                                  0                             4
  2Q GAIN WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q GAIN CNV                                                   0
  2Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2Q GAIN CNV                                       0
  2Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2Q GAIN CNV                                  0
  2Q GAIN WILD-TYPE                            3
D4V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN CNV         5  23   1   1
  2Q GAIN WILD-TYPE  75 146  21  15
D4V6, multiclass
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  T1           5                75
  T2          23               146
  T3           1                21
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  2Q GAIN CNV        18   6     6
  2Q GAIN WILD-TYPE 154  52    46
D4V7, multiclass
       clus
vv      2Q GAIN CNV 2Q GAIN WILD-TYPE
  N0             18               154
  N1              6                52
  N2+N3           6                46
                   vv
clus                 M0  M1  MX
  2Q GAIN CNV        21   4   4
  2Q GAIN WILD-TYPE 181  12  59
D4V8, multiclass
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  M0          21               181
  M1           4                12
  MX           4                59
                   vv
clus                  I  II III  IV
  2Q GAIN CNV        13   6   7   4
  2Q GAIN WILD-TYPE 136  55  50  12
D4V9, multiclass
     clus
vv    2Q GAIN CNV 2Q GAIN WILD-TYPE
  I            13               136
  II            6                55
  III           7                50
  IV            4                12
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          1   37
  2Q GAIN WILD-TYPE   19  332
     clus
vv    2Q GAIN CNV 2Q GAIN WILD-TYPE
  NO            1                19
  YES          37               332
D4V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q GAIN CNV                                                11
  2Q GAIN WILD-TYPE                                          89
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q GAIN CNV                                            8             10
  2Q GAIN WILD-TYPE                                     69             52
                   vv
clus                LIFELONG NON-SMOKER
  2Q GAIN CNV                         1
  2Q GAIN WILD-TYPE                  35
D4V12, multiclass
                                             clus
vv                                            2Q GAIN CNV 2Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          11                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                8                69
  CURRENT SMOKER                                       10                52
  LIFELONG NON-SMOKER                                   1                35
D4V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN CNV        28   1   0   1
  2Q GAIN WILD-TYPE 205   8   4  13
D4V14, multiclass
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  R0          28               205
  R1           1                 8
  R2           0                 4
  RX           1                13

Clustering(5) Variable = 3p gain
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN CNV         6   4
  3P GAIN WILD-TYPE 258  81
      3P GAIN CNV 3P GAIN WILD-TYPE 
               10               339 
      3P GAIN CNV 3P GAIN WILD-TYPE 
                4                81 
$`3P GAIN CNV`
TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-49-4488 TCGA-50-5946 TCGA-64-5775 
       26.01         8.68        28.11        28.57        11.47         0.10 
TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 TCGA-86-8074 
        5.06         4.01        27.16         0.79 

$`3P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       76.21        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 
       20.28        15.35         0.46         1.32         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.43         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      3P GAIN CNV 3P GAIN WILD-TYPE 
             0.10              0.03 
      3P GAIN CNV 3P GAIN WILD-TYPE 
            28.57            223.96 
      3P GAIN CNV 3P GAIN WILD-TYPE 
           10.075             8.020 
[1] "0.1 - 28.6 (10.1)" "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3P GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          5    5
  3P GAIN WILD-TYPE  206  173
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  FEMALE           5               206
  MALE             5               173
D5V4, continuous
[1] "Remove cluster labels:" "3P GAIN CNV"           
clus
      3P GAIN CNV 3P GAIN WILD-TYPE 
                2                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-86-7955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P GAIN CNV                                1
  3P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P GAIN CNV                                       2
  3P GAIN WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN CNV                                                        6
  3P GAIN WILD-TYPE                                                237
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P GAIN CNV                                                0
  3P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P GAIN CNV                                                   0
  3P GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P GAIN CNV                                    0
  3P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P GAIN CNV                                        0
  3P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P GAIN CNV                                  0                             1
  3P GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P GAIN CNV                                                   0
  3P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3P GAIN CNV                                       0
  3P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3P GAIN CNV                                  0
  3P GAIN WILD-TYPE                            3
D5V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN CNV         3   3   1   2
  3P GAIN WILD-TYPE  77 166  21  14
D5V6, multiclass
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  T1           3                77
  T2           3               166
  T3           1                21
  T4           2                14
                   vv
clus                 N0  N1 N2+N3
  3P GAIN CNV         5   3     1
  3P GAIN WILD-TYPE 167  55    51
D5V7, multiclass
       clus
vv      3P GAIN CNV 3P GAIN WILD-TYPE
  N0              5               167
  N1              3                55
  N2+N3           1                51
                   vv
clus                 M0  M1  MX
  3P GAIN CNV         6   1   2
  3P GAIN WILD-TYPE 196  15  61
D5V8, multiclass
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  M0           6               196
  M1           1                15
  MX           2                61
                   vv
clus                  I  II III  IV
  3P GAIN CNV         3   3   2   1
  3P GAIN WILD-TYPE 146  58  55  15
D5V9, multiclass
     clus
vv    3P GAIN CNV 3P GAIN WILD-TYPE
  I             3               146
  II            3                58
  III           2                55
  IV            1                15
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          1    9
  3P GAIN WILD-TYPE   19  360
     clus
vv    3P GAIN CNV 3P GAIN WILD-TYPE
  NO            1                19
  YES           9               360
D5V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P GAIN CNV                                                 6
  3P GAIN WILD-TYPE                                          94
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P GAIN CNV                                            1              1
  3P GAIN WILD-TYPE                                     76             61
                   vv
clus                LIFELONG NON-SMOKER
  3P GAIN CNV                         1
  3P GAIN WILD-TYPE                  35
D5V12, multiclass
                                             clus
vv                                            3P GAIN CNV 3P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           6                94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        1                61
  LIFELONG NON-SMOKER                                   1                35
D5V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN CNV         7   1   0   0
  3P GAIN WILD-TYPE 226   8   4  14
D5V14, multiclass
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  R0           7               226
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(6) Variable = 3q gain
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN CNV        14   6
  3Q GAIN WILD-TYPE 250  79
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               20               329 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                6                79 
$`3Q GAIN CNV`
TCGA-05-4427 TCGA-05-5429 TCGA-35-5375 TCGA-44-5643 TCGA-44-7660 TCGA-44-7670 
       26.01         0.99         8.68         3.48         5.33        17.46 
TCGA-49-4487 TCGA-49-4488 TCGA-50-5931 TCGA-50-5946 TCGA-55-1594 TCGA-55-6984 
       28.11        28.57         8.78        11.47        38.73        24.99 
TCGA-55-A490 TCGA-69-7760 TCGA-69-7980 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 
        1.58         5.06        12.56         4.01        27.16         5.65 
TCGA-86-8074 TCGA-95-7947 
        0.79         1.32 

$`3Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         6.21         4.60        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        18.87        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.75         2.50        76.21        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
        8.38        35.11        31.89        13.74        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
        7.76         2.20        45.34        32.71        60.03        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         1.32         1.25        20.42        17.06       163.10 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 
        0.46         0.62         0.33         0.43         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.76         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             0.79              0.03 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
            38.73            223.96 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             8.73              8.02 
[1] "0.8 - 38.7 (8.7)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"3Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         11   12
  3Q GAIN WILD-TYPE  200  166
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  FEMALE          11               200
  MALE            12               166
D6V4, continuous
[1] "Remove cluster labels:" "3Q GAIN CNV"           
clus
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                2                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-86-7955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q GAIN CNV                                1
  3Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q GAIN CNV                                       5
  3Q GAIN WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN CNV                                                       15
  3Q GAIN WILD-TYPE                                                228
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q GAIN CNV                                                0
  3Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q GAIN CNV                                                   1
  3Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q GAIN CNV                                    0
  3Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q GAIN CNV                                        0
  3Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q GAIN CNV                                  0                             1
  3Q GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q GAIN CNV                                                   0
  3Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3Q GAIN CNV                                       0
  3Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3Q GAIN CNV                                  0
  3Q GAIN WILD-TYPE                            3
D6V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN CNV         5   9   2   1
  3Q GAIN WILD-TYPE  75 160  20  15
D6V6, multiclass
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  T1           5                75
  T2           9               160
  T3           2                20
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  3Q GAIN CNV         7   5     5
  3Q GAIN WILD-TYPE 165  53    47
D6V7, multiclass
       clus
vv      3Q GAIN CNV 3Q GAIN WILD-TYPE
  N0              7               165
  N1              5                53
  N2+N3           5                47
                   vv
clus                 M0  M1  MX
  3Q GAIN CNV        13   1   3
  3Q GAIN WILD-TYPE 189  15  60
D6V8, multiclass
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  M0          13               189
  M1           1                15
  MX           3                60
                   vv
clus                  I  II III  IV
  3Q GAIN CNV         6   5   5   1
  3Q GAIN WILD-TYPE 143  56  52  15
D6V9, multiclass
     clus
vv    3Q GAIN CNV 3Q GAIN WILD-TYPE
  I             6               143
  II            5                56
  III           5                52
  IV            1                15
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV          2   21
  3Q GAIN WILD-TYPE   18  348
     clus
vv    3Q GAIN CNV 3Q GAIN WILD-TYPE
  NO            2                18
  YES          21               348
D6V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q GAIN CNV                                                 7
  3Q GAIN WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q GAIN CNV                                            2              4
  3Q GAIN WILD-TYPE                                     75             58
                   vv
clus                LIFELONG NON-SMOKER
  3Q GAIN CNV                         2
  3Q GAIN WILD-TYPE                  34
D6V12, multiclass
                                             clus
vv                                            3Q GAIN CNV 3Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           7                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2                75
  CURRENT SMOKER                                        4                58
  LIFELONG NON-SMOKER                                   2                34
D6V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN CNV        14   1   0   0
  3Q GAIN WILD-TYPE 219   8   4  14
D6V14, multiclass
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  R0          14               219
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(7) Variable = 4p gain
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN CNV        14  10
  4P GAIN WILD-TYPE 250  75
      4P GAIN CNV 4P GAIN WILD-TYPE 
               24               325 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               10                75 
$`4P GAIN CNV`
TCGA-05-5423 TCGA-38-4629 TCGA-38-4631 TCGA-44-4112 TCGA-44-5645 TCGA-50-6594 
        4.96        28.37        11.64         4.60         6.84        12.16 
TCGA-50-7109 TCGA-53-7624 TCGA-55-1594 TCGA-55-8094 TCGA-55-A492 TCGA-62-A46O 
        8.38        35.11        38.73         0.13         0.03        47.77 
TCGA-64-1680 TCGA-64-1681 TCGA-69-7980 TCGA-78-7145 TCGA-78-7150 TCGA-78-7163 
       37.02        44.38        12.56        27.16        21.86       223.96 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7542 TCGA-86-8279 TCGA-91-6836 TCGA-97-8179 
       26.53        31.20        10.55         0.69         0.36         0.49 

$`4P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       85.32        37.71        49.02        35.28        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        8.32         6.44         6.21         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       13.74         8.52         3.22         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21        33.37         0.72        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16         5.29        68.81        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        55.40        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
      163.10         5.65        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7536 
       22.29         7.04       104.15         8.48        88.11         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        28.96        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.43         0.79         1.41         0.85         0.76         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 
        3.48         5.95         5.36         4.80         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      4P GAIN CNV 4P GAIN WILD-TYPE 
             0.03              0.03 
      4P GAIN CNV 4P GAIN WILD-TYPE 
           223.96            163.10 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            12.36              7.76 
[1] "0.0 - 224.0 (12.4)" "0.0 - 163.1 (7.8)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P GAIN WILD-TYPE"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV         12   15
  4P GAIN WILD-TYPE  199  163
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  FEMALE          12               199
  MALE            15               163
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN CNV"           
clus
      4P GAIN CNV 4P GAIN WILD-TYPE 
                1                28 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7955        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P GAIN CNV                                1
  4P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P GAIN CNV                                       3
  4P GAIN WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN CNV                                                       22
  4P GAIN WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P GAIN CNV                                                0
  4P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P GAIN CNV                                                   0
  4P GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P GAIN CNV                                    0
  4P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P GAIN CNV                                        0
  4P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P GAIN CNV                                  0                             0
  4P GAIN WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P GAIN CNV                                                   1
  4P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4P GAIN CNV                                       0
  4P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4P GAIN CNV                                  0
  4P GAIN WILD-TYPE                            3
D7V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN CNV         2  15   2   1
  4P GAIN WILD-TYPE  78 154  20  15
D7V6, multiclass
    clus
vv   4P GAIN CNV 4P GAIN WILD-TYPE
  T1           2                78
  T2          15               154
  T3           2                20
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  4P GAIN CNV        13   3     4
  4P GAIN WILD-TYPE 159  55    48
D7V7, multiclass
       clus
vv      4P GAIN CNV 4P GAIN WILD-TYPE
  N0             13               159
  N1              3                55
  N2+N3           4                48
                   vv
clus                 M0  M1  MX
  4P GAIN CNV        15   3   2
  4P GAIN WILD-TYPE 187  13  61
D7V8, multiclass
    clus
vv   4P GAIN CNV 4P GAIN WILD-TYPE
  M0          15               187
  M1           3                13
  MX           2                61
                   vv
clus                  I  II III  IV
  4P GAIN CNV        12   3   3   3
  4P GAIN WILD-TYPE 137  58  54  13
D7V9, multiclass
     clus
vv    4P GAIN CNV 4P GAIN WILD-TYPE
  I            12               137
  II            3                58
  III           3                54
  IV            3                13
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          1   26
  4P GAIN WILD-TYPE   19  343
     clus
vv    4P GAIN CNV 4P GAIN WILD-TYPE
  NO            1                19
  YES          26               343
D7V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P GAIN CNV                                                 7
  4P GAIN WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P GAIN CNV                                            6              8
  4P GAIN WILD-TYPE                                     71             54
                   vv
clus                LIFELONG NON-SMOKER
  4P GAIN CNV                         0
  4P GAIN WILD-TYPE                  36
D7V12, multiclass
                                             clus
vv                                            4P GAIN CNV 4P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           7                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                6                71
  CURRENT SMOKER                                        8                54
  LIFELONG NON-SMOKER                                   0                36
D7V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN CNV        20   1   0   0
  4P GAIN WILD-TYPE 213   8   4  14
D7V14, multiclass
    clus
vv   4P GAIN CNV 4P GAIN WILD-TYPE
  R0          20               213
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(8) Variable = 4q gain
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN CNV         4   3
  4Q GAIN WILD-TYPE 260  82
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               342 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                3                82 
$`4Q GAIN CNV`
TCGA-38-4629 TCGA-50-6594 TCGA-64-1680 TCGA-69-7980 TCGA-78-7163 TCGA-78-7542 
       28.37        12.16        37.02        12.56       223.96        10.55 
TCGA-91-6836 
        0.36 

$`4Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 

      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             0.36              0.03 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
           223.96            163.10 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
            12.56              7.92 
[1] "0.4 - 224.0 (12.6)" "0.0 - 163.1 (7.9)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          3    6
  4Q GAIN WILD-TYPE  208  172
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  FEMALE           3               208
  MALE             6               172
D8V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q GAIN CNV                                0
  4Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q GAIN CNV                                       1
  4Q GAIN WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN CNV                                                        7
  4Q GAIN WILD-TYPE                                                236
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q GAIN CNV                                                0
  4Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q GAIN CNV                                                   0
  4Q GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q GAIN CNV                                    0
  4Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q GAIN CNV                                        0
  4Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q GAIN CNV                                  0                             0
  4Q GAIN WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q GAIN CNV                                                   1
  4Q GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4Q GAIN CNV                                       0
  4Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4Q GAIN CNV                                  0
  4Q GAIN WILD-TYPE                            3
D8V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN CNV         0   6   2   0
  4Q GAIN WILD-TYPE  80 163  20  16
D8V6, multiclass
    clus
vv   4Q GAIN CNV 4Q GAIN WILD-TYPE
  T1           0                80
  T2           6               163
  T3           2                20
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  4Q GAIN CNV         6   0     2
  4Q GAIN WILD-TYPE 166  58    50
D8V7, multiclass
       clus
vv      4Q GAIN CNV 4Q GAIN WILD-TYPE
  N0              6               166
  N1              0                58
  N2+N3           2                50
                   vv
clus                 M0  M1  MX
  4Q GAIN CNV         6   1   1
  4Q GAIN WILD-TYPE 196  15  62
D8V8, multiclass
    clus
vv   4Q GAIN CNV 4Q GAIN WILD-TYPE
  M0           6               196
  M1           1                15
  MX           1                62
                   vv
clus                  I  II III  IV
  4Q GAIN CNV         5   1   1   1
  4Q GAIN WILD-TYPE 144  60  56  15
D8V9, multiclass
     clus
vv    4Q GAIN CNV 4Q GAIN WILD-TYPE
  I             5               144
  II            1                60
  III           1                56
  IV            1                15
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          1    8
  4Q GAIN WILD-TYPE   19  361
     clus
vv    4Q GAIN CNV 4Q GAIN WILD-TYPE
  NO            1                19
  YES           8               361
D8V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q GAIN CNV                                                 4
  4Q GAIN WILD-TYPE                                          96
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q GAIN CNV                                            1              3
  4Q GAIN WILD-TYPE                                     76             59
                   vv
clus                LIFELONG NON-SMOKER
  4Q GAIN CNV                         0
  4Q GAIN WILD-TYPE                  36
D8V12, multiclass
                                             clus
vv                                            4Q GAIN CNV 4Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4                96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        3                59
  LIFELONG NON-SMOKER                                   0                36
D8V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN CNV         6   0   0   0
  4Q GAIN WILD-TYPE 227   9   4  14
D8V14, multiclass
    clus
vv   4Q GAIN CNV 4Q GAIN WILD-TYPE
  R0           6               227
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(9) Variable = 5p gain
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN CNV       100  32
  5P GAIN WILD-TYPE 164  53
      5P GAIN CNV 5P GAIN WILD-TYPE 
              132               217 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               32                53 
$`5P GAIN CNV`
TCGA-05-4405 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5425 
       20.05        30.02        26.01        25.02         4.96         2.96 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        0.46         8.68        85.32        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2668 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       19.10        17.39         8.09         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-7659 
        6.84         7.76         5.42         2.70        32.45         9.80 
TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-44-A47A TCGA-44-A47F TCGA-49-4487 
        1.64        18.87         8.52         6.64         8.09        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 
       28.57        12.66        46.72        14.07        29.75        12.13 
TCGA-49-6744 TCGA-50-5045 TCGA-50-5051 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 
       12.99        71.47        14.96         9.27        77.88        21.47 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-7109 TCGA-53-7626 
       11.47         3.88        25.51        11.05         8.38        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 
       23.05        38.73        48.62         2.86         0.07        15.25 
TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6987 TCGA-55-7725 
       48.49         7.76         2.20        45.34        38.47         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7910 TCGA-55-8094 TCGA-55-8301 
        1.02         1.02         0.62         6.48         0.13         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-A490 
        7.46         0.30         6.97         0.49         1.58         1.58 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 
        0.16         5.29        68.81        55.40        37.02        83.84 
TCGA-64-5778 TCGA-67-3770 TCGA-67-3773 TCGA-67-6215 TCGA-69-7760 TCGA-69-7764 
       30.44         0.99         2.04         0.89         5.06        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-8253 TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 
        4.24         7.56         3.25        52.57        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 
        1.32         4.01        17.06       163.10        19.27        35.93 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 
       19.50        38.50       223.96         8.48        26.53        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7953 
        8.02        10.75        32.68        13.81         0.89         1.12 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.62         0.43         0.69         0.62         0.85         1.12 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6836 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        0.99         1.22         0.36         9.76         4.18         1.12 
TCGA-95-7947 TCGA-97-7547 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        1.32        47.18        43.76         8.65         5.95         0.59 
TCGA-99-8025 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L9-A444 
       14.04         5.56         9.44         9.27         6.97         0.20 

$`5P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 
        0.99         2.04         7.36         5.95        47.61        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       13.15         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         3.48         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 
        3.12        63.72        36.49        16.41         5.33         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.31        17.46        17.59        13.74         3.22         8.38 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 
        4.44         3.75         2.50        76.21        35.54        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-49-6761 
        8.81        29.46        43.20        15.02         4.93         0.03 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        35.87         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       12.26        42.31        12.16         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7813 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       35.11        13.74        45.17        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 
       40.70         0.92         3.88         5.46        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 
        3.12         1.32         0.79         1.78         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.10         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        7.07         0.10         4.80         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-62-A46O 
        1.08         1.02         0.95         0.03         0.92        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       44.38         0.10        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.59         0.69        13.87         6.12        22.68 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4677 TCGA-73-7498 
        2.01        23.38        29.95        20.28         1.25        20.42 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16         5.65        20.58        21.86        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-86-7713 
       88.11        53.33        28.96        10.55         0.36         0.23 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.46         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8280 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        0.53         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.28        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 
        4.18         0.92         1.02         6.08         0.07         5.36 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7941 TCGA-97-8171 
        0.69         4.34        31.66        48.53         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        5.95         5.36         4.80         0.49         8.22        15.06 
TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 
        1.45         5.03         3.72         7.82         2.50         3.81 
TCGA-MN-A4N4 
       20.42 

      5P GAIN CNV 5P GAIN WILD-TYPE 
             0.07              0.03 
      5P GAIN CNV 5P GAIN WILD-TYPE 
           223.96            104.15 
      5P GAIN CNV 5P GAIN WILD-TYPE 
            8.585             7.070 
[1] "0.1 - 224.0 (8.6)" "0.0 - 104.2 (7.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-MN-A4N4 
"5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-MN-A4N4 
"5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-MN-A4N4 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         76   69
  5P GAIN WILD-TYPE  135  109
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  FEMALE          76               135
  MALE            69               109
D9V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P GAIN CNV                                2
  5P GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P GAIN CNV                                      28
  5P GAIN WILD-TYPE                                51
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN CNV                                                       95
  5P GAIN WILD-TYPE                                                148
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P GAIN CNV                                                1
  5P GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P GAIN CNV                                                   8
  5P GAIN WILD-TYPE                                             9
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P GAIN CNV                                    2
  5P GAIN WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P GAIN CNV                                        2
  5P GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P GAIN CNV                                  0                             5
  5P GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P GAIN CNV                                                   2
  5P GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5P GAIN CNV                                       0
  5P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5P GAIN CNV                                  0
  5P GAIN WILD-TYPE                            3
D9V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN CNV        35  64   7   4
  5P GAIN WILD-TYPE  45 105  15  12
D9V6, multiclass
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  T1          35                45
  T2          64               105
  T3           7                15
  T4           4                12
                   vv
clus                 N0  N1 N2+N3
  5P GAIN CNV        65  21    22
  5P GAIN WILD-TYPE 107  37    30
D9V7, multiclass
       clus
vv      5P GAIN CNV 5P GAIN WILD-TYPE
  N0             65               107
  N1             21                37
  N2+N3          22                30
                   vv
clus                 M0  M1  MX
  5P GAIN CNV        76   5  27
  5P GAIN WILD-TYPE 126  11  36
D9V8, multiclass
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  M0          76               126
  M1           5                11
  MX          27                36
                   vv
clus                 I II III IV
  5P GAIN CNV       58 24  22  6
  5P GAIN WILD-TYPE 91 37  35 10
D9V9, multiclass
     clus
vv    5P GAIN CNV 5P GAIN WILD-TYPE
  I            58                91
  II           24                37
  III          22                35
  IV            6                10
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         11  134
  5P GAIN WILD-TYPE    9  235
     clus
vv    5P GAIN CNV 5P GAIN WILD-TYPE
  NO           11                 9
  YES         134               235
D9V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P GAIN CNV                                                44
  5P GAIN WILD-TYPE                                          56
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P GAIN CNV                                           26             24
  5P GAIN WILD-TYPE                                     51             38
                   vv
clus                LIFELONG NON-SMOKER
  5P GAIN CNV                        13
  5P GAIN WILD-TYPE                  23
D9V12, multiclass
                                             clus
vv                                            5P GAIN CNV 5P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          44                56
  CURRENT REFORMED SMOKER FOR > 15 YEARS               26                51
  CURRENT SMOKER                                       24                38
  LIFELONG NON-SMOKER                                  13                23
D9V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN CNV        91   1   0   7
  5P GAIN WILD-TYPE 142   8   4   7
D9V14, multiclass
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  R0          91               142
  R1           1                 8
  R2           0                 4
  RX           7                 7

Clustering(10) Variable = 5q gain
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN CNV        33  10
  5Q GAIN WILD-TYPE 231  75
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               43               306 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               10                75 
$`5Q GAIN CNV`
TCGA-05-4426 TCGA-05-5423 TCGA-35-3615 TCGA-44-2659 TCGA-44-2665 TCGA-44-4112 
       26.01         4.96         0.46        17.39        13.15         4.60 
TCGA-44-5645 TCGA-44-6777 TCGA-44-7659 TCGA-44-A47A TCGA-44-A47F TCGA-49-4501 
        6.84        32.45         9.80         6.64         8.09        46.72 
TCGA-49-4512 TCGA-50-5051 TCGA-50-5935 TCGA-50-6591 TCGA-50-6592 TCGA-55-1595 
       29.75        14.96        21.47         3.88        25.51        48.62 
TCGA-55-6543 TCGA-55-6972 TCGA-55-6980 TCGA-55-7910 TCGA-55-8514 TCGA-55-A4DG 
        0.07        48.49         2.20         6.48         6.97         5.29 
TCGA-64-1680 TCGA-64-5775 TCGA-67-6215 TCGA-69-7760 TCGA-69-8253 TCGA-73-4675 
       37.02         0.10         0.89         5.06         3.25         1.32 
TCGA-78-7147 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 
       19.27       223.96        26.53         8.02        10.75        32.68 
TCGA-86-8358 TCGA-86-A4D0 TCGA-91-6836 TCGA-93-7347 TCGA-95-7947 TCGA-97-7547 
        0.62         0.99         0.36         9.76         1.32        47.18 
TCGA-J2-A4AE 
        9.27 

$`5Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         3.48        16.37         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       17.46        17.59        13.74         8.52         3.22         8.38 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       35.11        31.89        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        2.86        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
        0.92         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        44.38        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        0.59         2.04         0.59         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        20.28        15.35         0.46         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7540 
      104.15         8.48        88.11        31.20        53.33        28.96 
TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       10.55        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.69         0.53         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4P8 
        1.45         1.08         0.56         0.49         0.33         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        4.18         0.92         1.02         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 
        0.07         5.36         0.69         4.34        31.66        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 

      5Q GAIN CNV 5Q GAIN WILD-TYPE 
             0.07              0.03 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
           223.96            163.10 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            8.090             8.035 
[1] "0.1 - 224.0 (8.1)" "0.0 - 163.1 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV         26   19
  5Q GAIN WILD-TYPE  185  159
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  FEMALE          26               185
  MALE            19               159
D10V4, continuous
[1] "Remove cluster labels:" "5Q GAIN CNV"           
clus
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
                1                28 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7955        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q GAIN CNV                                1
  5Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q GAIN CNV                                       9
  5Q GAIN WILD-TYPE                                70
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN CNV                                                       30
  5Q GAIN WILD-TYPE                                                213
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q GAIN CNV                                                1
  5Q GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q GAIN CNV                                                   1
  5Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q GAIN CNV                                    1
  5Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q GAIN CNV                                        0
  5Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q GAIN CNV                                  0                             2
  5Q GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q GAIN CNV                                                   0
  5Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5Q GAIN CNV                                       0
  5Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5Q GAIN CNV                                  0
  5Q GAIN WILD-TYPE                            3
D10V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN CNV         7  25   2   1
  5Q GAIN WILD-TYPE  73 144  20  15
D10V6, multiclass
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  T1           7                73
  T2          25               144
  T3           2                20
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  5Q GAIN CNV        23   5     6
  5Q GAIN WILD-TYPE 149  53    46
D10V7, multiclass
       clus
vv      5Q GAIN CNV 5Q GAIN WILD-TYPE
  N0             23               149
  N1              5                53
  N2+N3           6                46
                   vv
clus                 M0  M1  MX
  5Q GAIN CNV        25   3   6
  5Q GAIN WILD-TYPE 177  13  57
D10V8, multiclass
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  M0          25               177
  M1           3                13
  MX           6                57
                   vv
clus                  I  II III  IV
  5Q GAIN CNV        19   7   6   3
  5Q GAIN WILD-TYPE 130  54  51  13
D10V9, multiclass
     clus
vv    5Q GAIN CNV 5Q GAIN WILD-TYPE
  I            19               130
  II            7                54
  III           6                51
  IV            3                13
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          5   40
  5Q GAIN WILD-TYPE   15  329
     clus
vv    5Q GAIN CNV 5Q GAIN WILD-TYPE
  NO            5                15
  YES          40               329
D10V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q GAIN CNV                                                12
  5Q GAIN WILD-TYPE                                          88
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q GAIN CNV                                            8              6
  5Q GAIN WILD-TYPE                                     69             56
                   vv
clus                LIFELONG NON-SMOKER
  5Q GAIN CNV                         9
  5Q GAIN WILD-TYPE                  27
D10V12, multiclass
                                             clus
vv                                            5Q GAIN CNV 5Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          12                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                8                69
  CURRENT SMOKER                                        6                56
  LIFELONG NON-SMOKER                                   9                27
D10V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN CNV        26   0   0   2
  5Q GAIN WILD-TYPE 207   9   4  12
D10V14, multiclass
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  R0          26               207
  R1           0                 9
  R2           0                 4
  RX           2                12

Clustering(11) Variable = 6p gain
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN CNV        44  12
  6P GAIN WILD-TYPE 220  73
      6P GAIN CNV 6P GAIN WILD-TYPE 
               56               293 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               12                73 
$`6P GAIN CNV`
TCGA-05-4420 TCGA-05-5425 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-44-6147 
       29.95         2.96         0.46         8.68        47.61         7.76 
TCGA-44-6774 TCGA-44-7667 TCGA-44-7670 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        5.42        18.31        17.46         9.37        12.26        11.47 
TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-6970 
        3.88         0.72         8.38        23.05        48.62        15.25 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A490 TCGA-62-8399 TCGA-62-A470 
        6.97         0.49         2.14         1.58        68.81        39.22 
TCGA-64-1677 TCGA-64-1680 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 TCGA-69-7979 
       20.65        37.02         2.04        22.68        13.61         2.93 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 
        2.01        29.95        15.35         0.46         1.25        20.42 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7155 TCGA-78-7161 TCGA-78-7162 TCGA-78-7220 
       19.27        35.93        38.50         7.04       104.15        26.53 
TCGA-78-7539 TCGA-78-7633 TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 TCGA-91-6836 
       10.75        32.68         1.41         0.69         0.62         0.36 
TCGA-97-7553 TCGA-97-7938 TCGA-97-8171 TCGA-97-8179 TCGA-99-8025 TCGA-J2-8194 
       43.76         0.59         3.48         0.49        14.04         3.72 
TCGA-J2-A4AE TCGA-MN-A4N4 
        9.27        20.42 

$`6P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        3.35         9.93         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.87        17.59        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       15.12         4.44        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        6.21        33.37        35.11        31.89        13.74        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 
        1.41         7.46         0.30         0.10         4.80         1.58 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        1.61         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.92         0.16         5.29        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       56.81        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
        6.12         4.24         7.56         6.05         2.30        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        3.25         2.50         4.21        52.57        23.38        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       20.58        21.86        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11        22.29       223.96         8.48        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 
       31.20         8.02        53.33        28.96        10.55        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.33         0.43         0.79         0.85         0.76         0.53 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        8.65         5.95         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD 
        8.22        15.06         1.45         5.56         5.03         9.44 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        7.82         6.97         2.50         3.81         0.20 

      6P GAIN CNV 6P GAIN WILD-TYPE 
             0.36              0.03 
      6P GAIN CNV 6P GAIN WILD-TYPE 
           104.15            223.96 
      6P GAIN CNV 6P GAIN WILD-TYPE 
            10.06              7.76 
[1] "0.4 - 104.2 (10.1)" "0.0 - 224.0 (7.8)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
      "6P GAIN CNV" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
      "6P GAIN CNV" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV"       "6P GAIN CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "6P GAIN CNV"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "6P GAIN CNV" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
      "6P GAIN CNV" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV         31   28
  6P GAIN WILD-TYPE  180  150
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  FEMALE          31               180
  MALE            28               150
D11V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P GAIN CNV                                4
  6P GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P GAIN CNV                                      13
  6P GAIN WILD-TYPE                                66
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN CNV                                                       32
  6P GAIN WILD-TYPE                                                211
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P GAIN CNV                                                0
  6P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P GAIN CNV                                                   3
  6P GAIN WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P GAIN CNV                                    1
  6P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P GAIN CNV                                        1
  6P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P GAIN CNV                                  0                             5
  6P GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P GAIN CNV                                                   0
  6P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6P GAIN CNV                                       0
  6P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6P GAIN CNV                                  0
  6P GAIN WILD-TYPE                            3
D11V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN CNV        15  21   3   1
  6P GAIN WILD-TYPE  65 148  19  15
D11V6, multiclass
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  T1          15                65
  T2          21               148
  T3           3                19
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  6P GAIN CNV        28   4     7
  6P GAIN WILD-TYPE 144  54    45
D11V7, multiclass
       clus
vv      6P GAIN CNV 6P GAIN WILD-TYPE
  N0             28               144
  N1              4                54
  N2+N3           7                45
                   vv
clus                 M0  M1  MX
  6P GAIN CNV        29   3   8
  6P GAIN WILD-TYPE 173  13  55
D11V8, multiclass
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  M0          29               173
  M1           3                13
  MX           8                55
                   vv
clus                  I  II III  IV
  6P GAIN CNV        23   7   7   3
  6P GAIN WILD-TYPE 126  54  50  13
D11V9, multiclass
     clus
vv    6P GAIN CNV 6P GAIN WILD-TYPE
  I            23               126
  II            7                54
  III           7                50
  IV            3                13
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          2   57
  6P GAIN WILD-TYPE   18  312
     clus
vv    6P GAIN CNV 6P GAIN WILD-TYPE
  NO            2                18
  YES          57               312
D11V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P GAIN CNV                                                12
  6P GAIN WILD-TYPE                                          88
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P GAIN CNV                                            9             15
  6P GAIN WILD-TYPE                                     68             47
                   vv
clus                LIFELONG NON-SMOKER
  6P GAIN CNV                         3
  6P GAIN WILD-TYPE                  33
D11V12, multiclass
                                             clus
vv                                            6P GAIN CNV 6P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          12                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                9                68
  CURRENT SMOKER                                       15                47
  LIFELONG NON-SMOKER                                   3                33
D11V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN CNV        35   1   0   1
  6P GAIN WILD-TYPE 198   8   4  13
D11V14, multiclass
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  R0          35               198
  R1           1                 8
  R2           0                 4
  RX           1                13

Clustering(12) Variable = 6q gain
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN CNV        12   3
  6Q GAIN WILD-TYPE 252  82
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               15               334 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                3                82 
$`6Q GAIN CNV`
TCGA-38-4625 TCGA-44-7667 TCGA-44-7670 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 
       47.61        18.31        17.46         3.88         0.72         8.38 
TCGA-55-7910 TCGA-55-8514 TCGA-55-8620 TCGA-71-6725 TCGA-78-7220 TCGA-78-7539 
        6.48         6.97         2.14         2.01        26.53        10.75 
TCGA-91-6836 TCGA-99-8025 TCGA-J2-A4AE 
        0.36        14.04         9.27 

$`6Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.87        17.59        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 
       25.51        11.05        12.16         6.21        33.37        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         0.10         4.80         0.49         1.58 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        1.61         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       88.11        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.36         4.80         0.49         8.22        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 
        5.56         5.03         3.72         9.44         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             0.36              0.03 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            47.61            223.96 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            8.380             8.035 
[1] "0.4 - 47.6 (8.4)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV         13    2
  6Q GAIN WILD-TYPE  198  176
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  FEMALE          13               198
  MALE             2               176
D12V4, continuous
[1] "Remove cluster labels:" "6Q GAIN CNV"           
clus
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                2                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-73-4659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-86-7955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q GAIN CNV                                0
  6Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q GAIN CNV                                       2
  6Q GAIN WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN CNV                                                       12
  6Q GAIN WILD-TYPE                                                231
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q GAIN CNV                                                0
  6Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q GAIN CNV                                                   0
  6Q GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q GAIN CNV                                    0
  6Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q GAIN CNV                                        0
  6Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q GAIN CNV                                  0                             1
  6Q GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q GAIN CNV                                                   0
  6Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6Q GAIN CNV                                       0
  6Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6Q GAIN CNV                                  0
  6Q GAIN WILD-TYPE                            3
D12V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN CNV         4   6   1   0
  6Q GAIN WILD-TYPE  76 163  21  16
D12V6, multiclass
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  T1           4                76
  T2           6               163
  T3           1                21
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  6Q GAIN CNV         9   1     1
  6Q GAIN WILD-TYPE 163  57    51
D12V7, multiclass
       clus
vv      6Q GAIN CNV 6Q GAIN WILD-TYPE
  N0              9               163
  N1              1                57
  N2+N3           1                51
                   vv
clus                 M0  M1  MX
  6Q GAIN CNV         7   1   3
  6Q GAIN WILD-TYPE 195  15  60
D12V8, multiclass
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  M0           7               195
  M1           1                15
  MX           3                60
                   vv
clus                  I  II III  IV
  6Q GAIN CNV         5   4   1   1
  6Q GAIN WILD-TYPE 144  57  56  15
D12V9, multiclass
     clus
vv    6Q GAIN CNV 6Q GAIN WILD-TYPE
  I             5               144
  II            4                57
  III           1                56
  IV            1                15
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          0   15
  6Q GAIN WILD-TYPE   20  354
     clus
vv    6Q GAIN CNV 6Q GAIN WILD-TYPE
  NO            0                20
  YES          15               354
D12V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q GAIN CNV                                                 1
  6Q GAIN WILD-TYPE                                          99
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q GAIN CNV                                            1              7
  6Q GAIN WILD-TYPE                                     76             55
                   vv
clus                LIFELONG NON-SMOKER
  6Q GAIN CNV                         2
  6Q GAIN WILD-TYPE                  34
D12V12, multiclass
                                             clus
vv                                            6Q GAIN CNV 6Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           1                99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        7                55
  LIFELONG NON-SMOKER                                   2                34
D12V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN CNV         8   0   0   1
  6Q GAIN WILD-TYPE 225   9   4  13
D12V14, multiclass
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  R0           8               225
  R1           0                 9
  R2           0                 4
  RX           1                13

Clustering(13) Variable = 7p gain
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN CNV        85  34
  7P GAIN WILD-TYPE 179  51
      7P GAIN CNV 7P GAIN WILD-TYPE 
              119               230 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               34                51 
$`7P GAIN CNV`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-35-4122 TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 
       29.95         4.96         7.36         8.68        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2659 TCGA-44-3396 TCGA-44-4112 
       11.64        44.61         5.19        17.39        10.22         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6775 TCGA-44-7660 
       16.37         6.84         0.30         7.76         2.70         5.33 
TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-44-A4SU TCGA-49-4488 TCGA-49-4490 
        1.64        18.87         8.52         2.50        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 
       35.54        14.07        29.75         4.93         0.03        71.47 
TCGA-50-5055 TCGA-50-5933 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       25.81        77.88         8.45        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 
        3.88        11.05        12.16         6.21         0.72        35.11 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 
        2.86         0.07         0.79        48.49         7.76         2.20 
TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 TCGA-55-7726 TCGA-55-7910 
       45.34        40.54         1.12         1.32         1.02         6.48 
TCGA-55-8510 TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A493 TCGA-55-A494 
        7.46         6.97         0.49         2.14         0.92         0.16 
TCGA-62-8399 TCGA-62-A46P TCGA-64-1680 TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 
       68.81        19.53        37.02        44.38        16.67        39.52 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4670 
       13.87         5.06         2.93         2.01        52.57         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.32         4.01        17.06       163.10        27.16        19.27 
TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7163 TCGA-78-7535 
       21.86        19.50        38.50         7.04       223.96        31.20 
TCGA-78-7540 TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
       28.96         0.36         0.46         0.33         0.79         1.41 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-91-6831 
        0.69         0.53         0.62         0.85         1.45         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-95-7944 TCGA-95-7947 TCGA-97-7554 
        1.15        26.93         4.18         0.69         1.32         8.65 
TCGA-97-7937 TCGA-97-8171 TCGA-97-8179 TCGA-99-8025 TCGA-J2-8192 TCGA-J2-8194 
        5.95         3.48         0.49        14.04         5.03         3.72 
TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        9.27         6.97         3.81         0.20        20.42 

$`7P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        0.46         5.95        47.61        85.32        37.71        35.28 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        6.21         3.48         3.35         9.93         3.12         5.42 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.31        17.46        17.59        13.74         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 
        6.64         8.09         4.44         3.75        76.21        28.11 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 
       12.13        12.99        20.48        48.82        14.96         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6592 TCGA-50-6597 TCGA-50-7109 
       15.12         9.37         4.44        25.51        33.37         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61        42.48        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 
        5.46        32.71        60.03        24.99        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.59         0.13         3.12         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         0.53         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 
        1.41         0.30         0.10         4.80         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A4DG TCGA-62-A46O TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
        5.29        47.77        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 
       39.09        55.40        83.84         0.10        30.44         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        0.69         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30        12.56         3.25         2.50         4.21 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4677 TCGA-73-7498 
       23.38        29.95        20.28        15.35         1.25        20.42 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
        5.65        20.58        35.93        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11        22.29       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 
       26.53         8.02        53.33        10.75        10.55        32.68 
TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 
       13.81         0.89         0.23         1.12         0.62         0.43 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         0.76         1.12         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6836 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        1.12         0.07         5.36         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       48.53        43.76         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AD 
        4.80         8.22        15.06         1.45         5.56         9.44 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

      7P GAIN CNV 7P GAIN WILD-TYPE 
             0.03              0.03 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           223.96            104.15 
      7P GAIN CNV 7P GAIN WILD-TYPE 
             7.36              8.35 
[1] "0.0 - 224.0 (7.4)" "0.0 - 104.2 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-MN-A4N4 
      "7P GAIN CNV" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-MN-A4N4 
      "7P GAIN CNV" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-MN-A4N4 
      "7P GAIN CNV" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         73   59
  7P GAIN WILD-TYPE  138  119
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  FEMALE          73               138
  MALE            59               119
D13V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P GAIN CNV                                5
  7P GAIN WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P GAIN CNV                                      20
  7P GAIN WILD-TYPE                                59
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN CNV                                                       89
  7P GAIN WILD-TYPE                                                154
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P GAIN CNV                                                3
  7P GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P GAIN CNV                                                   5
  7P GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P GAIN CNV                                    0
  7P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P GAIN CNV                                        1
  7P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P GAIN CNV                                  0                             7
  7P GAIN WILD-TYPE                            2                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P GAIN CNV                                                   1
  7P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7P GAIN CNV                                       1
  7P GAIN WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7P GAIN CNV                                  0
  7P GAIN WILD-TYPE                            3
D13V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN CNV        20  61  10   5
  7P GAIN WILD-TYPE  60 108  12  11
D13V6, multiclass
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  T1          20                60
  T2          61               108
  T3          10                12
  T4           5                11
                   vv
clus                 N0  N1 N2+N3
  7P GAIN CNV        47  21    26
  7P GAIN WILD-TYPE 125  37    26
D13V7, multiclass
       clus
vv      7P GAIN CNV 7P GAIN WILD-TYPE
  N0             47               125
  N1             21                37
  N2+N3          26                26
                   vv
clus                 M0  M1  MX
  7P GAIN CNV        66   9  17
  7P GAIN WILD-TYPE 136   7  46
D13V8, multiclass
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  M0          66               136
  M1           9                 7
  MX          17                46
                   vv
clus                  I  II III  IV
  7P GAIN CNV        41  19  25   9
  7P GAIN WILD-TYPE 108  42  32   7
D13V9, multiclass
     clus
vv    7P GAIN CNV 7P GAIN WILD-TYPE
  I            41               108
  II           19                42
  III          25                32
  IV            9                 7
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV          5  127
  7P GAIN WILD-TYPE   15  242
     clus
vv    7P GAIN CNV 7P GAIN WILD-TYPE
  NO            5                15
  YES         127               242
D13V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P GAIN CNV                                                37
  7P GAIN WILD-TYPE                                          63
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P GAIN CNV                                           23             18
  7P GAIN WILD-TYPE                                     54             44
                   vv
clus                LIFELONG NON-SMOKER
  7P GAIN CNV                        14
  7P GAIN WILD-TYPE                  22
D13V12, multiclass
                                             clus
vv                                            7P GAIN CNV 7P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          37                63
  CURRENT REFORMED SMOKER FOR > 15 YEARS               23                54
  CURRENT SMOKER                                       18                44
  LIFELONG NON-SMOKER                                  14                22
D13V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN CNV        78   3   2   7
  7P GAIN WILD-TYPE 155   6   2   7
D13V14, multiclass
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  R0          78               155
  R1           3                 6
  R2           2                 2
  RX           7                 7

Clustering(14) Variable = 7q gain
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN CNV        67  18
  7Q GAIN WILD-TYPE 197  67
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               85               264 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               18                67 
$`7Q GAIN CNV`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-05-5425 TCGA-35-4122 TCGA-35-5375 TCGA-38-4632 
       29.95         4.96         2.96         7.36         8.68        44.61 
TCGA-38-6178 TCGA-44-2662 TCGA-44-3396 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 
        5.19        15.78        10.22         6.84         0.30         7.76 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-49-4490 TCGA-49-4494 
        5.33         1.64        18.87         8.52        12.66        35.54 
TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-50-5045 TCGA-50-5930 TCGA-50-5944 
       14.07        29.75         4.93        71.47         9.27        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-6543 TCGA-55-6712 
       11.47        42.31         3.88        23.05         0.07         0.79 
TCGA-55-6972 TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 
       48.49         2.20        45.34        40.54         1.12         1.32 
TCGA-55-7726 TCGA-55-7910 TCGA-55-8510 TCGA-55-8514 TCGA-55-8620 TCGA-55-A493 
        1.02         6.48         7.46         6.97         2.14         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-64-1680 TCGA-64-1681 TCGA-64-5781 TCGA-69-7760 
        0.16        68.81        37.02        44.38        39.52         5.06 
TCGA-69-7978 TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 
        2.30         2.93         2.01        52.57        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7145 TCGA-78-7163 TCGA-78-7540 
        1.32         4.01        17.06        27.16       223.96        28.96 
TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8280 
        0.36         0.46         0.33         0.43         1.41         0.53 
TCGA-86-8668 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-95-7944 TCGA-95-7947 
        1.45         1.15        26.93         4.18         0.69         1.32 
TCGA-97-7554 TCGA-97-7937 TCGA-97-8171 TCGA-97-8179 TCGA-99-8025 TCGA-L4-A4E5 
        8.65         5.95         3.48         0.49        14.04         6.97 
TCGA-L9-A444 
        0.20 

$`7Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02         1.02         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        13.15         3.19         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 
       32.45        36.49        16.41         9.80         5.03        18.31 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.46        17.59        13.74         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       28.57        46.72        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         0.03        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       14.96        25.81         9.76        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        4.44        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       48.62        45.17         2.86        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6982 
       15.25         0.92         3.88         5.46         7.76        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       60.03        24.99        71.05        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        3.12         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8511 
        0.85         0.13         0.49         7.07         1.41         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.10         4.80         0.49         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DG 
        1.08         1.02         0.95         1.58         0.03         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        55.40        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        4.24         7.56         6.05        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-73-7498 
        4.21        23.38        29.95        15.35         1.25        20.42 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       26.53        31.20         8.02        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       32.68        13.81         0.89         0.23         1.12         0.62 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 
        0.79         0.85         0.76         0.69         0.62         0.85 
TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.12         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 
        1.28         1.22        41.33         0.03         1.28         0.36 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.07         5.36         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
       43.76         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.22        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N4 
        9.44         9.27         7.82         2.50         3.81        20.42 

      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             0.07              0.03 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
           223.96            163.10 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
            6.840             8.415 
[1] "0.1 - 224.0 (6.8)" "0.0 - 163.1 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-MN-A4N4 
"7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-MN-A4N4 
"7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-MN-A4N4 
"7Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV         48   46
  7Q GAIN WILD-TYPE  163  132
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  FEMALE          48               163
  MALE            46               132
D14V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q GAIN CNV                                4
  7Q GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q GAIN CNV                                      18
  7Q GAIN WILD-TYPE                                61
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN CNV                                                       57
  7Q GAIN WILD-TYPE                                                186
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q GAIN CNV                                                3
  7Q GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q GAIN CNV                                                   5
  7Q GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q GAIN CNV                                    0
  7Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q GAIN CNV                                        1
  7Q GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q GAIN CNV                                  0                             6
  7Q GAIN WILD-TYPE                            2                            12
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q GAIN CNV                                                   0
  7Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7Q GAIN CNV                                       0
  7Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7Q GAIN CNV                                  0
  7Q GAIN WILD-TYPE                            3
D14V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN CNV        14  43   7   4
  7Q GAIN WILD-TYPE  66 126  15  12
D14V6, multiclass
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  T1          14                66
  T2          43               126
  T3           7                15
  T4           4                12
                   vv
clus                 N0  N1 N2+N3
  7Q GAIN CNV        35  14    17
  7Q GAIN WILD-TYPE 137  44    35
D14V7, multiclass
       clus
vv      7Q GAIN CNV 7Q GAIN WILD-TYPE
  N0             35               137
  N1             14                44
  N2+N3          17                35
                   vv
clus                 M0  M1  MX
  7Q GAIN CNV        43   8  14
  7Q GAIN WILD-TYPE 159   8  49
D14V8, multiclass
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  M0          43               159
  M1           8                 8
  MX          14                49
                   vv
clus                  I  II III  IV
  7Q GAIN CNV        29  12  17   8
  7Q GAIN WILD-TYPE 120  49  40   8
D14V9, multiclass
     clus
vv    7Q GAIN CNV 7Q GAIN WILD-TYPE
  I            29               120
  II           12                49
  III          17                40
  IV            8                 8
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV          6   88
  7Q GAIN WILD-TYPE   14  281
     clus
vv    7Q GAIN CNV 7Q GAIN WILD-TYPE
  NO            6                14
  YES          88               281
D14V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q GAIN CNV                                                25
  7Q GAIN WILD-TYPE                                          75
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q GAIN CNV                                           19             12
  7Q GAIN WILD-TYPE                                     58             50
                   vv
clus                LIFELONG NON-SMOKER
  7Q GAIN CNV                        10
  7Q GAIN WILD-TYPE                  26
D14V12, multiclass
                                             clus
vv                                            7Q GAIN CNV 7Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          25                75
  CURRENT REFORMED SMOKER FOR > 15 YEARS               19                58
  CURRENT SMOKER                                       12                50
  LIFELONG NON-SMOKER                                  10                26
D14V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN CNV        53   2   2   5
  7Q GAIN WILD-TYPE 180   7   2   9
D14V14, multiclass
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  R0          53               180
  R1           2                 7
  R2           2                 2
  RX           5                 9

Clustering(15) Variable = 8p gain
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN CNV        34  10
  8P GAIN WILD-TYPE 230  75
      8P GAIN CNV 8P GAIN WILD-TYPE 
               44               305 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               10                75 
$`8P GAIN CNV`
TCGA-05-4417 TCGA-05-4432 TCGA-35-5375 TCGA-38-4629 TCGA-44-6147 TCGA-44-6778 
       14.93        25.02         8.68        28.37         7.76        36.49 
TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 TCGA-44-A47F TCGA-49-4512 TCGA-50-5051 
       18.31        18.87         3.22         8.09        29.75        14.96 
TCGA-50-5944 TCGA-50-5946 TCGA-50-7109 TCGA-55-1596 TCGA-55-6969 TCGA-55-6970 
       12.26        11.47         8.38        45.17        40.70        15.25 
TCGA-55-8615 TCGA-55-A48Z TCGA-55-A494 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.49         0.95         0.16        19.53        39.22        17.75 
TCGA-64-1680 TCGA-64-5779 TCGA-69-7973 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       37.02        16.67         7.56         0.46         1.32         4.01 
TCGA-73-4677 TCGA-78-7145 TCGA-78-7153 TCGA-78-7158 TCGA-78-7159 TCGA-78-7535 
        1.25        27.16        24.99         5.88        40.11        31.20 
TCGA-91-6831 TCGA-91-7771 TCGA-95-7948 TCGA-97-7547 TCGA-97-7553 TCGA-97-8172 
        1.28         1.02         4.34        47.18        43.76         5.95 
TCGA-99-8025 TCGA-L9-A444 
       14.04         0.20 

$`8P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 
        1.64        17.46        17.59        13.74         8.52         8.38 
TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        6.64         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       42.48         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         5.29        68.81        47.77 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 
        5.06         6.12        22.68        13.61         4.24         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        19.50        38.50        32.09 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        0.99         1.28         1.22        41.33         0.03         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        0.36        26.93         4.18         0.92         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       31.66        48.53         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        3.48         5.36         4.80         0.49         8.22        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81        20.42 

      8P GAIN CNV 8P GAIN WILD-TYPE 
             0.16              0.03 
      8P GAIN CNV 8P GAIN WILD-TYPE 
            47.18            223.96 
      8P GAIN CNV 8P GAIN WILD-TYPE 
           14.485             7.360 
[1] "0.2 - 47.2 (14.5)" "0.0 - 224.0 (7.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-MN-A4N4 
"8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-MN-A4N4 
"8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8P GAIN CNV"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-MN-A4N4 
"8P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV         23   26
  8P GAIN WILD-TYPE  188  152
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  FEMALE          23               188
  MALE            26               152
D15V4, continuous
[1] "Remove cluster labels:" "8P GAIN CNV"           
clus
      8P GAIN CNV 8P GAIN WILD-TYPE 
                2                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-86-7955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P GAIN CNV                                4
  8P GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P GAIN CNV                                      11
  8P GAIN WILD-TYPE                                68
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN CNV                                                       30
  8P GAIN WILD-TYPE                                                213
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P GAIN CNV                                                0
  8P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P GAIN CNV                                                   1
  8P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P GAIN CNV                                    0
  8P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P GAIN CNV                                        0
  8P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P GAIN CNV                                  0                             3
  8P GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P GAIN CNV                                                   0
  8P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8P GAIN CNV                                       0
  8P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8P GAIN CNV                                  0
  8P GAIN WILD-TYPE                            3
D15V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN CNV         8  21   4   2
  8P GAIN WILD-TYPE  72 148  18  14
D15V6, multiclass
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  T1           8                72
  T2          21               148
  T3           4                18
  T4           2                14
                   vv
clus                 N0  N1 N2+N3
  8P GAIN CNV        19   7     7
  8P GAIN WILD-TYPE 153  51    45
D15V7, multiclass
       clus
vv      8P GAIN CNV 8P GAIN WILD-TYPE
  N0             19               153
  N1              7                51
  N2+N3           7                45
                   vv
clus                 M0  M1  MX
  8P GAIN CNV        20   3  12
  8P GAIN WILD-TYPE 182  13  51
D15V8, multiclass
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  M0          20               182
  M1           3                13
  MX          12                51
                   vv
clus                  I  II III  IV
  8P GAIN CNV        17   8   7   3
  8P GAIN WILD-TYPE 132  53  50  13
D15V9, multiclass
     clus
vv    8P GAIN CNV 8P GAIN WILD-TYPE
  I            17               132
  II            8                53
  III           7                50
  IV            3                13
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          3   46
  8P GAIN WILD-TYPE   17  323
     clus
vv    8P GAIN CNV 8P GAIN WILD-TYPE
  NO            3                17
  YES          46               323
D15V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P GAIN CNV                                                17
  8P GAIN WILD-TYPE                                          83
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P GAIN CNV                                            7              9
  8P GAIN WILD-TYPE                                     70             53
                   vv
clus                LIFELONG NON-SMOKER
  8P GAIN CNV                         1
  8P GAIN WILD-TYPE                  35
D15V12, multiclass
                                             clus
vv                                            8P GAIN CNV 8P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          17                83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                7                70
  CURRENT SMOKER                                        9                53
  LIFELONG NON-SMOKER                                   1                35
D15V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN CNV        27   2   0   1
  8P GAIN WILD-TYPE 206   7   4  13
D15V14, multiclass
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  R0          27               206
  R1           2                 7
  R2           0                 4
  RX           1                13

Clustering(16) Variable = 8q gain
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN CNV        80  28
  8Q GAIN WILD-TYPE 184  57
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              108               241 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               28                57 
$`8Q GAIN CNV`
TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4432 TCGA-05-5420 
       37.02        47.05         8.02        14.93        25.02         1.02 
TCGA-05-5423 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        4.96         8.68        47.61        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-5644 TCGA-44-6144 TCGA-44-6147 
       19.10         8.09         6.44        16.37         0.30         7.76 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 
       36.49        16.41         1.64        18.31        18.87         3.22 
TCGA-44-A47F TCGA-49-4488 TCGA-49-4512 TCGA-49-6761 TCGA-50-5051 TCGA-50-5066 
        8.09        28.57        29.75         0.03        14.96         9.76 
TCGA-50-5933 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 
       77.88         9.37        12.26        11.47         3.88        11.05 
TCGA-50-7109 TCGA-53-7813 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
        8.38        13.74        45.17        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6972 TCGA-55-6982 TCGA-55-7907 TCGA-55-7914 TCGA-55-8094 
       15.25        48.49        32.71         0.53         0.10         0.13 
TCGA-55-8097 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Z TCGA-55-A490 
        0.49         6.97         0.49         1.58         0.95         1.58 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16         5.29        47.77        19.53        39.22        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 
       20.65        39.09        37.02         0.10        16.67         1.97 
TCGA-69-7760 TCGA-69-7973 TCGA-69-8255 TCGA-71-6725 TCGA-73-4670 TCGA-73-4675 
        5.06         7.56         4.21         2.01         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        4.01         1.25        17.06       163.10        27.16         5.65 
TCGA-78-7152 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 TCGA-78-7535 
       39.48         5.88        40.11         7.04        26.53        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 
        8.02        10.75        10.55         0.85         1.12         1.08 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6831 TCGA-91-6847 TCGA-91-7771 TCGA-93-8067 
        0.99         1.22         1.28        26.93         1.02         6.08 
TCGA-95-7948 TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 TCGA-97-8172 TCGA-97-8179 
        4.34        47.18        43.76         0.59         5.95         0.49 
TCGA-99-8025 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AD TCGA-L9-A443 TCGA-L9-A444 
       14.04         1.45         3.72         9.44         3.81         0.20 

$`8Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 
       26.01        25.02        24.00        15.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 
       32.45         9.80         5.33         5.03        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS 
       13.74         8.52         8.38         6.64         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        2.50        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 
       21.47         8.45        15.12         4.44        42.31        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6968 
       23.05        38.73        48.62         2.86         0.07        42.48 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.62         6.48         0.69 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8299 TCGA-55-8301 
        0.69         3.02         0.20         0.85         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8620 
        7.46         0.30         0.10         4.80         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A492 TCGA-55-A493 TCGA-62-8399 
        3.45         1.08         1.02         0.03         0.92        68.81 
TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 
       56.81        55.40        44.38        83.84        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-7498 
       52.57        23.38        29.95        20.28        15.35        20.42 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        35.93        21.86        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       38.50        32.09        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       88.11        53.33        28.96        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        0.53         0.62         1.45         0.56         0.49         0.33 
TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        1.28        41.33         0.03         1.15         0.36         4.18 
TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        0.92         9.76         4.18         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        0.69         1.32        31.66        48.53         8.65         5.95 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 
        0.72         3.48         5.36         4.80         8.22        15.06 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        5.56         5.03         9.27         7.82         6.97         2.50 
TCGA-MN-A4N4 
       20.42 

      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             0.03              0.03 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
           163.10            223.96 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
            8.235             7.760 
[1] "0.0 - 163.1 (8.2)" "0.0 - 224.0 (7.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-MN-A4N4 
"8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-MN-A4N4 
"8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-MN-A4N4 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         62   61
  8Q GAIN WILD-TYPE  149  117
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  FEMALE          62               149
  MALE            61               117
D16V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q GAIN CNV                                6
  8Q GAIN WILD-TYPE                          5
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q GAIN CNV                                      26
  8Q GAIN WILD-TYPE                                53
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN CNV                                                       80
  8Q GAIN WILD-TYPE                                                163
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q GAIN CNV                                                0
  8Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q GAIN CNV                                                   4
  8Q GAIN WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q GAIN CNV                                    0
  8Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q GAIN CNV                                        0
  8Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q GAIN CNV                                  0                             5
  8Q GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q GAIN CNV                                                   2
  8Q GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8Q GAIN CNV                                       0
  8Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8Q GAIN CNV                                  0
  8Q GAIN WILD-TYPE                            3
D16V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN CNV        21  54   7   7
  8Q GAIN WILD-TYPE  59 115  15   9
D16V6, multiclass
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  T1          21                59
  T2          54               115
  T3           7                15
  T4           7                 9
                   vv
clus                 N0  N1 N2+N3
  8Q GAIN CNV        49  17    20
  8Q GAIN WILD-TYPE 123  41    32
D16V7, multiclass
       clus
vv      8Q GAIN CNV 8Q GAIN WILD-TYPE
  N0             49               123
  N1             17                41
  N2+N3          20                32
                   vv
clus                 M0  M1  MX
  8Q GAIN CNV        57   7  24
  8Q GAIN WILD-TYPE 145   9  39
D16V8, multiclass
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  M0          57               145
  M1           7                 9
  MX          24                39
                   vv
clus                  I  II III  IV
  8Q GAIN CNV        39  21  21   7
  8Q GAIN WILD-TYPE 110  40  36   9
D16V9, multiclass
     clus
vv    8Q GAIN CNV 8Q GAIN WILD-TYPE
  I            39               110
  II           21                40
  III          21                36
  IV            7                 9
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV          5  118
  8Q GAIN WILD-TYPE   15  251
     clus
vv    8Q GAIN CNV 8Q GAIN WILD-TYPE
  NO            5                15
  YES         118               251
D16V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q GAIN CNV                                                32
  8Q GAIN WILD-TYPE                                          68
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q GAIN CNV                                           19             26
  8Q GAIN WILD-TYPE                                     58             36
                   vv
clus                LIFELONG NON-SMOKER
  8Q GAIN CNV                        10
  8Q GAIN WILD-TYPE                  26
D16V12, multiclass
                                             clus
vv                                            8Q GAIN CNV 8Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          32                68
  CURRENT REFORMED SMOKER FOR > 15 YEARS               19                58
  CURRENT SMOKER                                       26                36
  LIFELONG NON-SMOKER                                  10                26
D16V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN CNV        73   3   1   6
  8Q GAIN WILD-TYPE 160   6   3   8
D16V14, multiclass
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  R0          73               160
  R1           3                 6
  R2           1                 3
  RX           6                 8

Clustering(17) Variable = 9p gain
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN CNV        10   1
  9P GAIN WILD-TYPE 254  84
      9P GAIN CNV 9P GAIN WILD-TYPE 
               11               338 
      9P GAIN CNV 9P GAIN WILD-TYPE 
                1                84 
$`9P GAIN CNV`
TCGA-05-4427 TCGA-55-7903 TCGA-55-8514 TCGA-55-8620 TCGA-64-5775 TCGA-69-7973 
       26.01         0.62         6.97         2.14         0.10         7.56 
TCGA-69-7979 TCGA-78-7163 TCGA-95-7039 TCGA-95-7947 TCGA-L9-A444 
        2.93       223.96         1.12         1.32         0.20 

$`9P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 
        1.28         1.02         1.02         0.79         1.78         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        44.38        83.84        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 
        6.08         0.07         5.36         0.69         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-MN-A4N4 
        3.81        20.42 

      9P GAIN CNV 9P GAIN WILD-TYPE 
             0.10              0.03 
      9P GAIN CNV 9P GAIN WILD-TYPE 
           223.96            163.10 
      9P GAIN CNV 9P GAIN WILD-TYPE 
             2.14              8.27 
[1] "0.1 - 224.0 (2.1)" "0.0 - 163.1 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MN-A4N4 
"9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MN-A4N4 
"9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MN-A4N4 
"9P GAIN WILD-TYPE" 
[1] "hr=" "3.6"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          6    6
  9P GAIN WILD-TYPE  205  172
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  FEMALE           6               205
  MALE             6               172
D17V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P GAIN CNV                                1
  9P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P GAIN CNV                                       5
  9P GAIN WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN CNV                                                        6
  9P GAIN WILD-TYPE                                                237
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P GAIN CNV                                                0
  9P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P GAIN CNV                                                   0
  9P GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P GAIN CNV                                    0
  9P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P GAIN CNV                                        0
  9P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P GAIN CNV                                  0                             0
  9P GAIN WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P GAIN CNV                                                   0
  9P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9P GAIN CNV                                       0
  9P GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9P GAIN CNV                                  0
  9P GAIN WILD-TYPE                            3
D17V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN CNV         1   3   1   1
  9P GAIN WILD-TYPE  79 166  21  15
D17V6, multiclass
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  T1           1                79
  T2           3               166
  T3           1                21
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  9P GAIN CNV         5   1     0
  9P GAIN WILD-TYPE 167  57    52
D17V7, multiclass
       clus
vv      9P GAIN CNV 9P GAIN WILD-TYPE
  N0              5               167
  N1              1                57
  N2+N3           0                52
                   vv
clus                 M0  M1  MX
  9P GAIN CNV         4   0   2
  9P GAIN WILD-TYPE 198  16  61
D17V8, multiclass
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  M0           4               198
  M1           0                16
  MX           2                61
                   vv
clus                  I  II III  IV
  9P GAIN CNV         3   2   1   0
  9P GAIN WILD-TYPE 146  59  56  16
D17V9, multiclass
     clus
vv    9P GAIN CNV 9P GAIN WILD-TYPE
  I             3               146
  II            2                59
  III           1                56
  IV            0                16
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          0   12
  9P GAIN WILD-TYPE   20  357
     clus
vv    9P GAIN CNV 9P GAIN WILD-TYPE
  NO            0                20
  YES          12               357
D17V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P GAIN CNV                                                 3
  9P GAIN WILD-TYPE                                          97
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P GAIN CNV                                            0              3
  9P GAIN WILD-TYPE                                     77             59
                   vv
clus                LIFELONG NON-SMOKER
  9P GAIN CNV                         0
  9P GAIN WILD-TYPE                  36
D17V12, multiclass
                                             clus
vv                                            9P GAIN CNV 9P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           3                97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0                77
  CURRENT SMOKER                                        3                59
  LIFELONG NON-SMOKER                                   0                36
D17V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN CNV         8   0   0   1
  9P GAIN WILD-TYPE 225   9   4  13
D17V14, multiclass
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  R0           8               225
  R1           0                 9
  R2           0                 4
  RX           1                13

Clustering(18) Variable = 9q gain
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN CNV         5   0
  9Q GAIN WILD-TYPE 259  85
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                5               344 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                0                85 
$`9Q GAIN CNV`
TCGA-05-4427 TCGA-55-8620 TCGA-78-7163 TCGA-91-6836 TCGA-95-7947 
       26.01         2.14       223.96         0.36         1.32 

$`9Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        0.07         5.36         0.69         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             0.36              0.03 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           223.96            163.10 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             2.14              8.07 
[1] "0.4 - 224.0 (2.1)" "0.0 - 163.1 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q GAIN WILD-TYPE" 
[1] "hr="     "3.5e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          2    3
  9Q GAIN WILD-TYPE  209  175
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  FEMALE           2               209
  MALE             3               175
D18V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q GAIN CNV                                0
  9Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q GAIN CNV                                       2
  9Q GAIN WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN CNV                                                        3
  9Q GAIN WILD-TYPE                                                240
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q GAIN CNV                                                0
  9Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q GAIN CNV                                                   0
  9Q GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q GAIN CNV                                    0
  9Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q GAIN CNV                                        0
  9Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q GAIN CNV                                  0                             0
  9Q GAIN WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q GAIN CNV                                                   0
  9Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9Q GAIN CNV                                       0
  9Q GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9Q GAIN CNV                                  0
  9Q GAIN WILD-TYPE                            3
D18V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN CNV         0   3   0   0
  9Q GAIN WILD-TYPE  80 166  22  16
D18V6, multiclass
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  T1           0                80
  T2           3               166
  T3           0                22
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  9Q GAIN CNV         2   1     0
  9Q GAIN WILD-TYPE 170  57    52
D18V7, multiclass
       clus
vv      9Q GAIN CNV 9Q GAIN WILD-TYPE
  N0              2               170
  N1              1                57
  N2+N3           0                52
                   vv
clus                 M0  M1  MX
  9Q GAIN CNV         2   0   1
  9Q GAIN WILD-TYPE 200  16  62
D18V8, multiclass
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  M0           2               200
  M1           0                16
  MX           1                62
                   vv
clus                  I  II III  IV
  9Q GAIN CNV         2   1   0   0
  9Q GAIN WILD-TYPE 147  60  57  16
D18V9, multiclass
     clus
vv    9Q GAIN CNV 9Q GAIN WILD-TYPE
  I             2               147
  II            1                60
  III           0                57
  IV            0                16
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          0    5
  9Q GAIN WILD-TYPE   20  364
     clus
vv    9Q GAIN CNV 9Q GAIN WILD-TYPE
  NO            0                20
  YES           5               364
D18V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q GAIN CNV                                                 2
  9Q GAIN WILD-TYPE                                          98
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q GAIN CNV                                            0              1
  9Q GAIN WILD-TYPE                                     77             61
                   vv
clus                LIFELONG NON-SMOKER
  9Q GAIN CNV                         0
  9Q GAIN WILD-TYPE                  36
D18V12, multiclass
                                             clus
vv                                            9Q GAIN CNV 9Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           2                98
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0                77
  CURRENT SMOKER                                        1                61
  LIFELONG NON-SMOKER                                   0                36
D18V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN CNV         4   0   0   0
  9Q GAIN WILD-TYPE 229   9   4  14
D18V14, multiclass
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  R0           4               229
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(19) Variable = 10p gain
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN CNV        29   9
  10P GAIN WILD-TYPE 235  76
      10P GAIN CNV 10P GAIN WILD-TYPE 
                38                311 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                 9                 76 
$`10P GAIN CNV`
TCGA-05-4405 TCGA-05-4430 TCGA-38-4632 TCGA-44-7671 TCGA-44-8117 TCGA-49-4487 
       20.05        25.02        44.61        17.59         8.52        28.11 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5946 TCGA-50-7109 TCGA-55-6970 TCGA-55-6972 
       14.96        49.28        11.47         8.38        15.25        48.49 
TCGA-55-7910 TCGA-55-8092 TCGA-55-8511 TCGA-55-8615 TCGA-55-8620 TCGA-62-A470 
        6.48         0.85         0.30         0.49         2.14        39.22 
TCGA-64-1678 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 TCGA-73-4677 TCGA-78-7149 
       39.09        22.68         2.01         0.46         1.25        35.93 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7542 TCGA-78-7633 TCGA-86-7711 
       19.50        38.50         7.04        10.55        32.68         0.89 
TCGA-86-7955 TCGA-91-6836 TCGA-93-8067 TCGA-95-7567 TCGA-97-7937 TCGA-97-8179 
        0.46         0.36         6.08         5.36         5.95         0.49 
TCGA-99-8025 TCGA-L9-A444 
       14.04         0.20 

$`10P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       17.46        13.74         3.22         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
        4.44         3.75         2.50        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       42.48        40.70         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.10         4.80         6.97         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.16         5.29        68.81        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.21        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        1.32         4.01        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       10.75        28.96        13.81         0.36         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.62         0.33         0.43         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.76         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        1.12         0.07         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 
        3.48         5.95         5.36         4.80         8.22        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81        20.42 

      10P GAIN CNV 10P GAIN WILD-TYPE 
              0.20               0.03 
      10P GAIN CNV 10P GAIN WILD-TYPE 
             49.28             223.96 
      10P GAIN CNV 10P GAIN WILD-TYPE 
             9.535              8.020 
[1] "0.2 - 49.3 (9.5)"  "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-MN-A4N4 
"10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-MN-A4N4 
"10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "10P GAIN CNV"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "10P GAIN CNV" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-MN-A4N4 
"10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV         17   26
  10P GAIN WILD-TYPE  194  152
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  FEMALE           17                194
  MALE             26                152
D19V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P GAIN CNV                                2
  10P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P GAIN CNV                                      11
  10P GAIN WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN CNV                                                       25
  10P GAIN WILD-TYPE                                                218
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P GAIN CNV                                                0
  10P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P GAIN CNV                                                   1
  10P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P GAIN CNV                                    0
  10P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P GAIN CNV                                        1
  10P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P GAIN CNV                                  0                             3
  10P GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P GAIN CNV                                                   0
  10P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10P GAIN CNV                                       0
  10P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10P GAIN CNV                                  0
  10P GAIN WILD-TYPE                            3
D19V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN CNV         6  22   2   1
  10P GAIN WILD-TYPE  74 147  20  15
D19V6, multiclass
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  T1            6                 74
  T2           22                147
  T3            2                 20
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  10P GAIN CNV        24   4     3
  10P GAIN WILD-TYPE 148  54    49
D19V7, multiclass
       clus
vv      10P GAIN CNV 10P GAIN WILD-TYPE
  N0              24                148
  N1               4                 54
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  10P GAIN CNV        23   2   6
  10P GAIN WILD-TYPE 179  14  57
D19V8, multiclass
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  M0           23                179
  M1            2                 14
  MX            6                 57
                    vv
clus                   I  II III  IV
  10P GAIN CNV        20   5   4   2
  10P GAIN WILD-TYPE 129  56  53  14
D19V9, multiclass
     clus
vv    10P GAIN CNV 10P GAIN WILD-TYPE
  I             20                129
  II             5                 56
  III            4                 53
  IV             2                 14
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          1   42
  10P GAIN WILD-TYPE   19  327
     clus
vv    10P GAIN CNV 10P GAIN WILD-TYPE
  NO             1                 19
  YES           42                327
D19V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P GAIN CNV                                                17
  10P GAIN WILD-TYPE                                          83
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P GAIN CNV                                            5              8
  10P GAIN WILD-TYPE                                     72             54
                    vv
clus                 LIFELONG NON-SMOKER
  10P GAIN CNV                         0
  10P GAIN WILD-TYPE                  36
D19V12, multiclass
                                             clus
vv                                            10P GAIN CNV 10P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           17                 83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5                 72
  CURRENT SMOKER                                         8                 54
  LIFELONG NON-SMOKER                                    0                 36
D19V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN CNV        25   1   0   4
  10P GAIN WILD-TYPE 208   8   4  10
D19V14, multiclass
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  R0           25                208
  R1            1                  8
  R2            0                  4
  RX            4                 10

Clustering(20) Variable = 10q gain
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN CNV        15   5
  10Q GAIN WILD-TYPE 249  80
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                20                329 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 5                 80 
$`10Q GAIN CNV`
TCGA-05-4430 TCGA-44-6144 TCGA-44-7671 TCGA-49-4487 TCGA-50-5051 TCGA-50-5946 
       25.02         0.30        17.59        28.11        14.96        11.47 
TCGA-55-6970 TCGA-55-6972 TCGA-55-8615 TCGA-62-A470 TCGA-69-7763 TCGA-71-6725 
       15.25        48.49         0.49        39.22        22.68         2.01 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 TCGA-78-7161 
        0.46         1.32         1.25        35.93        19.50         7.04 
TCGA-97-8179 TCGA-99-8025 
        0.49        14.04 

$`10Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.87        17.46        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       19.53        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         4.21        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 
       29.95        20.28        15.35         4.01        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
      163.10        27.16         5.65        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.95         5.36         4.80         8.22        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      10Q GAIN CNV 10Q GAIN WILD-TYPE 
              0.30               0.03 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             48.49             223.96 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             14.50               8.02 
[1] "0.3 - 48.5 (14.5)" "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q GAIN WILD-TYPE"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "10Q GAIN CNV"       "10Q GAIN CNV" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          8   15
  10Q GAIN WILD-TYPE  203  163
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  FEMALE            8                203
  MALE             15                163
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"10Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q GAIN CNV                                2
  10Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q GAIN CNV                                       7
  10Q GAIN WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN CNV                                                       10
  10Q GAIN WILD-TYPE                                                233
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q GAIN CNV                                                0
  10Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q GAIN CNV                                                   1
  10Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q GAIN CNV                                    0
  10Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q GAIN CNV                                        0
  10Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q GAIN CNV                                  0                             3
  10Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q GAIN CNV                                                   0
  10Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10Q GAIN CNV                                       0
  10Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10Q GAIN CNV                                  0
  10Q GAIN WILD-TYPE                            3
D20V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN CNV         5   9   3   1
  10Q GAIN WILD-TYPE  75 160  19  15
D20V6, multiclass
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  T1            5                 75
  T2            9                160
  T3            3                 19
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  10Q GAIN CNV        14   1     3
  10Q GAIN WILD-TYPE 158  57    49
D20V7, multiclass
       clus
vv      10Q GAIN CNV 10Q GAIN WILD-TYPE
  N0              14                158
  N1               1                 57
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  10Q GAIN CNV        15   1   2
  10Q GAIN WILD-TYPE 187  15  61
D20V8, multiclass
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  M0           15                187
  M1            1                 15
  MX            2                 61
                    vv
clus                   I  II III  IV
  10Q GAIN CNV        11   1   5   1
  10Q GAIN WILD-TYPE 138  60  52  15
D20V9, multiclass
     clus
vv    10Q GAIN CNV 10Q GAIN WILD-TYPE
  I             11                138
  II             1                 60
  III            5                 52
  IV             1                 15
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          1   22
  10Q GAIN WILD-TYPE   19  347
     clus
vv    10Q GAIN CNV 10Q GAIN WILD-TYPE
  NO             1                 19
  YES           22                347
D20V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q GAIN CNV                                                11
  10Q GAIN WILD-TYPE                                          89
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q GAIN CNV                                            3              4
  10Q GAIN WILD-TYPE                                     74             58
                    vv
clus                 LIFELONG NON-SMOKER
  10Q GAIN CNV                         0
  10Q GAIN WILD-TYPE                  36
D20V12, multiclass
                                             clus
vv                                            10Q GAIN CNV 10Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           11                 89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3                 74
  CURRENT SMOKER                                         4                 58
  LIFELONG NON-SMOKER                                    0                 36
D20V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN CNV        12   1   0   3
  10Q GAIN WILD-TYPE 221   8   4  11
D20V14, multiclass
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  R0           12                221
  R1            1                  8
  R2            0                  4
  RX            3                 11

Clustering(21) Variable = 11p gain
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN CNV        25   6
  11P GAIN WILD-TYPE 239  79
      11P GAIN CNV 11P GAIN WILD-TYPE 
                31                318 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 6                 79 
$`11P GAIN CNV`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 
        2.96        29.95        25.02         4.96         0.99        49.02 
TCGA-38-4629 TCGA-44-5645 TCGA-44-6779 TCGA-44-7660 TCGA-44-7669 TCGA-44-8119 
       28.37         6.84        16.41         5.33        18.87         3.22 
TCGA-44-A47A TCGA-55-1594 TCGA-55-6543 TCGA-55-6712 TCGA-55-8514 TCGA-55-8620 
        6.64        38.73         0.07         0.79         6.97         2.14 
TCGA-55-A494 TCGA-62-8399 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-69-7973 
        0.16        68.81         0.10        16.67         0.89         7.56 
TCGA-69-7974 TCGA-71-6725 TCGA-73-4662 TCGA-78-7163 TCGA-86-7955 TCGA-95-7043 
        6.05         2.01        29.95       223.96         0.46         0.07 
TCGA-97-7554 
        8.65 

$`11P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 
        8.68        47.61        85.32        37.71        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
        9.80         5.03         1.64        18.31        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       13.74         8.52         8.38         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       13.74        23.05        48.62        45.17         2.86        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       39.09        55.40        37.02        44.38        83.84        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        2.50         4.21        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        0.23         1.12         0.62         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        1.41         0.85         0.76         0.69         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       43.76         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 

      11P GAIN CNV 11P GAIN WILD-TYPE 
              0.07               0.03 
      11P GAIN CNV 11P GAIN WILD-TYPE 
            223.96             163.10 
      11P GAIN CNV 11P GAIN WILD-TYPE 
              6.64               8.27 
[1] "0.1 - 224.0 (6.6)" "0.0 - 163.1 (8.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"       "11P GAIN CNV"       "11P GAIN CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV         15   17
  11P GAIN WILD-TYPE  196  161
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  FEMALE           15                196
  MALE             17                161
D21V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P GAIN CNV                                1
  11P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P GAIN CNV                                       8
  11P GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN CNV                                                       19
  11P GAIN WILD-TYPE                                                224
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P GAIN CNV                                                1
  11P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P GAIN CNV                                                   0
  11P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P GAIN CNV                                    0
  11P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P GAIN CNV                                        0
  11P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P GAIN CNV                                  0                             3
  11P GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P GAIN CNV                                                   0
  11P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11P GAIN CNV                                       0
  11P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11P GAIN CNV                                  0
  11P GAIN WILD-TYPE                            3
D21V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN CNV         5  13   2   2
  11P GAIN WILD-TYPE  75 156  20  14
D21V6, multiclass
    clus
vv   11P GAIN CNV 11P GAIN WILD-TYPE
  T1            5                 75
  T2           13                156
  T3            2                 20
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  11P GAIN CNV        11   6     5
  11P GAIN WILD-TYPE 161  52    47
D21V7, multiclass
       clus
vv      11P GAIN CNV 11P GAIN WILD-TYPE
  N0              11                161
  N1               6                 52
  N2+N3            5                 47
                    vv
clus                  M0  M1  MX
  11P GAIN CNV        15   1   5
  11P GAIN WILD-TYPE 187  15  58
D21V8, multiclass
    clus
vv   11P GAIN CNV 11P GAIN WILD-TYPE
  M0           15                187
  M1            1                 15
  MX            5                 58
                    vv
clus                   I  II III  IV
  11P GAIN CNV         8   6   6   1
  11P GAIN WILD-TYPE 141  55  51  15
D21V9, multiclass
     clus
vv    11P GAIN CNV 11P GAIN WILD-TYPE
  I              8                141
  II             6                 55
  III            6                 51
  IV             1                 15
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          2   30
  11P GAIN WILD-TYPE   18  339
     clus
vv    11P GAIN CNV 11P GAIN WILD-TYPE
  NO             2                 18
  YES           30                339
D21V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P GAIN CNV                                                 7
  11P GAIN WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P GAIN CNV                                            6              7
  11P GAIN WILD-TYPE                                     71             55
                    vv
clus                 LIFELONG NON-SMOKER
  11P GAIN CNV                         3
  11P GAIN WILD-TYPE                  33
D21V12, multiclass
                                             clus
vv                                            11P GAIN CNV 11P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6                 71
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    3                 33
D21V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN CNV        18   1   0   2
  11P GAIN WILD-TYPE 215   8   4  12
D21V14, multiclass
    clus
vv   11P GAIN CNV 11P GAIN WILD-TYPE
  R0           18                215
  R1            1                  8
  R2            0                  4
  RX            2                 12

Clustering(22) Variable = 11q gain
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN CNV        34   8
  11Q GAIN WILD-TYPE 230  77
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                42                307 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 8                 77 
$`11Q GAIN CNV`
TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 
       29.95        25.02         4.96         0.99        49.02        28.37 
TCGA-44-2656 TCGA-44-5645 TCGA-44-6774 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       19.10         6.84         5.42        16.41         5.33         1.64 
TCGA-44-7669 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47A TCGA-50-5933 TCGA-53-7624 
       18.87         8.52         3.22         6.64        77.88        35.11 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-55-7910 TCGA-55-8514 
       38.73        45.17         0.07         0.79         6.48         6.97 
TCGA-55-8620 TCGA-55-A494 TCGA-62-8399 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 
        2.14         0.16        68.81         0.10        16.67         0.89 
TCGA-69-7973 TCGA-69-7974 TCGA-71-6725 TCGA-73-4666 TCGA-73-4676 TCGA-78-7154 
        7.56         6.05         2.01        20.28         4.01        19.50 
TCGA-78-7155 TCGA-78-7163 TCGA-86-7955 TCGA-86-8279 TCGA-91-6848 TCGA-95-7043 
       38.50       223.96         0.46         0.69         4.18         0.07 

$`11Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02         1.02         2.96         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        5.95         8.68        47.61        85.32        37.71        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        3.12         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-A479 
        5.03        18.31        17.46        17.59        13.74         8.38 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 
       31.89        13.74        23.05        48.62         2.86        32.61 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        0.49         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-A46O 
        0.95         1.58         0.03         0.92         5.29        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 
       55.40        37.02        44.38        83.84        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        4.24         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        4.21        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        1.32         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       24.99        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.43         0.79         1.41         0.85         0.76         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 
        0.03         1.28         1.15         0.36        26.93         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              0.07               0.03 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
            223.96             163.10 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              6.74               8.22 
[1] "0.1 - 224.0 (6.7)" "0.0 - 163.1 (8.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"       "11Q GAIN CNV"       "11Q GAIN CNV" 
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        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
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      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV         19   25
  11Q GAIN WILD-TYPE  192  153
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  FEMALE           19                192
  MALE             25                153
D22V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q GAIN CNV                                1
  11Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q GAIN CNV                                       7
  11Q GAIN WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN CNV                                                       33
  11Q GAIN WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q GAIN CNV                                                1
  11Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q GAIN CNV                                                   0
  11Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q GAIN CNV                                    0
  11Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q GAIN CNV                                        0
  11Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q GAIN CNV                                  0                             2
  11Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q GAIN CNV                                                   0
  11Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11Q GAIN CNV                                       0
  11Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11Q GAIN CNV                                  0
  11Q GAIN WILD-TYPE                            3
D22V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN CNV         6  21   3   2
  11Q GAIN WILD-TYPE  74 148  19  14
D22V6, multiclass
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  T1            6                 74
  T2           21                148
  T3            3                 19
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  11Q GAIN CNV        17   8     7
  11Q GAIN WILD-TYPE 155  50    45
D22V7, multiclass
       clus
vv      11Q GAIN CNV 11Q GAIN WILD-TYPE
  N0              17                155
  N1               8                 50
  N2+N3            7                 45
                    vv
clus                  M0  M1  MX
  11Q GAIN CNV        21   3   7
  11Q GAIN WILD-TYPE 181  13  56
D22V8, multiclass
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  M0           21                181
  M1            3                 13
  MX            7                 56
                    vv
clus                   I  II III  IV
  11Q GAIN CNV        11   9   8   3
  11Q GAIN WILD-TYPE 138  52  49  13
D22V9, multiclass
     clus
vv    11Q GAIN CNV 11Q GAIN WILD-TYPE
  I             11                138
  II             9                 52
  III            8                 49
  IV             3                 13
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          4   40
  11Q GAIN WILD-TYPE   16  329
     clus
vv    11Q GAIN CNV 11Q GAIN WILD-TYPE
  NO             4                 16
  YES           40                329
D22V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q GAIN CNV                                                13
  11Q GAIN WILD-TYPE                                          87
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q GAIN CNV                                            4             12
  11Q GAIN WILD-TYPE                                     73             50
                    vv
clus                 LIFELONG NON-SMOKER
  11Q GAIN CNV                         3
  11Q GAIN WILD-TYPE                  33
D22V12, multiclass
                                             clus
vv                                            11Q GAIN CNV 11Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13                 87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                        12                 50
  LIFELONG NON-SMOKER                                    3                 33
D22V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN CNV        25   1   0   2
  11Q GAIN WILD-TYPE 208   8   4  12
D22V14, multiclass
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  R0           25                208
  R1            1                  8
  R2            0                  4
  RX            2                 12

Clustering(23) Variable = 12p gain
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN CNV        31  11
  12P GAIN WILD-TYPE 233  74
      12P GAIN CNV 12P GAIN WILD-TYPE 
                42                307 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                11                 74 
$`12P GAIN CNV`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 
       37.02        14.93         8.98        29.95        25.02         6.44 
TCGA-44-5643 TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 TCGA-49-4512 
        3.48        16.37        18.87        17.46        29.46        29.75 
TCGA-50-5072 TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 TCGA-55-6981 
        8.05         9.37        38.73        48.62         0.79        45.34 
TCGA-55-6985 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 TCGA-55-8094 TCGA-55-8615 
       40.54         1.02         0.79         6.48         0.13         0.49 
TCGA-55-A490 TCGA-55-A494 TCGA-62-A46O TCGA-62-A470 TCGA-64-1678 TCGA-64-5775 
        1.58         0.16        47.77        39.22        39.09         0.10 
TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 
        0.59         7.56        12.56         0.46         1.32        27.16 
TCGA-78-7154 TCGA-78-7220 TCGA-86-7713 TCGA-86-8669 TCGA-91-6836 TCGA-MN-A4N4 
       19.50        26.53         0.23         1.08         0.36        20.42 

$`12P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 
       23.05        45.17         2.86         0.07        32.61        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        7.76         2.20        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.10         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 
        1.02         0.95         0.03         0.92         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 
        4.01         1.25        20.42        17.06       163.10         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.53         0.62         0.85         1.12         1.45         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 
        0.20 

      12P GAIN CNV 12P GAIN WILD-TYPE 
              0.10               0.03 
      12P GAIN CNV 12P GAIN WILD-TYPE 
             48.62             223.96 
      12P GAIN CNV 12P GAIN WILD-TYPE 
            10.965              7.820 
[1] "0.1 - 48.6 (11.0)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "12P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "12P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "12P GAIN CNV" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         27   22
  12P GAIN WILD-TYPE  184  156
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  FEMALE           27                184
  MALE             22                156
D23V4, continuous
[1] "Remove cluster labels:" "12P GAIN CNV"          
clus
      12P GAIN CNV 12P GAIN WILD-TYPE 
                 2                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-86-7955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P GAIN CNV                                1
  12P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P GAIN CNV                                       9
  12P GAIN WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN CNV                                                       36
  12P GAIN WILD-TYPE                                                207
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P GAIN CNV                                                0
  12P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P GAIN CNV                                                   0
  12P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P GAIN CNV                                    1
  12P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P GAIN CNV                                        0
  12P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P GAIN CNV                                  0                             1
  12P GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P GAIN CNV                                                   0
  12P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12P GAIN CNV                                       1
  12P GAIN WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12P GAIN CNV                                  0
  12P GAIN WILD-TYPE                            3
D23V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN CNV         6  24   5   3
  12P GAIN WILD-TYPE  74 145  17  13
D23V6, multiclass
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  T1            6                 74
  T2           24                145
  T3            5                 17
  T4            3                 13
                    vv
clus                  N0  N1 N2+N3
  12P GAIN CNV        17  10    11
  12P GAIN WILD-TYPE 155  48    41
D23V7, multiclass
       clus
vv      12P GAIN CNV 12P GAIN WILD-TYPE
  N0              17                155
  N1              10                 48
  N2+N3           11                 41
                    vv
clus                  M0  M1  MX
  12P GAIN CNV        27   2   8
  12P GAIN WILD-TYPE 175  14  55
D23V8, multiclass
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  M0           27                175
  M1            2                 14
  MX            8                 55
                    vv
clus                   I  II III  IV
  12P GAIN CNV        12  10  13   2
  12P GAIN WILD-TYPE 137  51  44  14
D23V9, multiclass
     clus
vv    12P GAIN CNV 12P GAIN WILD-TYPE
  I             12                137
  II            10                 51
  III           13                 44
  IV             2                 14
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV          2   47
  12P GAIN WILD-TYPE   18  322
     clus
vv    12P GAIN CNV 12P GAIN WILD-TYPE
  NO             2                 18
  YES           47                322
D23V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P GAIN CNV                                                12
  12P GAIN WILD-TYPE                                          88
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P GAIN CNV                                            6             16
  12P GAIN WILD-TYPE                                     71             46
                    vv
clus                 LIFELONG NON-SMOKER
  12P GAIN CNV                         4
  12P GAIN WILD-TYPE                  32
D23V12, multiclass
                                             clus
vv                                            12P GAIN CNV 12P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           12                 88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6                 71
  CURRENT SMOKER                                        16                 46
  LIFELONG NON-SMOKER                                    4                 32
D23V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN CNV        30   1   1   1
  12P GAIN WILD-TYPE 203   8   3  13
D23V14, multiclass
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  R0           30                203
  R1            1                  8
  R2            1                  3
  RX            1                 13

Clustering(24) Variable = 12q gain
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN CNV        26   8
  12Q GAIN WILD-TYPE 238  77
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                34                315 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 8                 77 
$`12Q GAIN CNV`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 TCGA-44-5644 
       37.02         8.98        29.95        25.02         6.44        16.37 
TCGA-44-7669 TCGA-44-7670 TCGA-44-8119 TCGA-49-4510 TCGA-49-4512 TCGA-50-5072 
       18.87        17.46         3.22        29.46        29.75         8.05 
TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 
        9.37        38.73        48.62         1.02         0.79         6.48 
TCGA-55-8615 TCGA-55-A490 TCGA-62-A46O TCGA-62-A470 TCGA-64-1678 TCGA-64-5779 
        0.49         1.58        47.77        39.22        39.09        16.67 
TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-69-8255 TCGA-73-4670 TCGA-73-4675 
        0.59         7.56        12.56         4.21         0.46         1.32 
TCGA-78-7145 TCGA-78-7220 TCGA-86-8669 TCGA-91-6836 
       27.16        26.53         1.08         0.36 

$`12Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4424 
       47.05         8.02        20.05         2.96        14.93        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 
        1.64        18.31        17.59        13.74         8.52         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       32.84         8.81        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         0.53         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.95         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84         0.10        30.44        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 
        6.05         2.30         2.93         3.25         2.50         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
       52.57        23.38        29.95        20.28        15.35         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              0.36               0.03 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
             48.62             223.96 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            10.965              7.820 
[1] "0.4 - 48.6 (11.0)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV         22   18
  12Q GAIN WILD-TYPE  189  160
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  FEMALE           22                189
  MALE             18                160
D24V4, continuous
[1] "Remove cluster labels:" "12Q GAIN CNV"          
clus
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"12Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q GAIN CNV                                2
  12Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q GAIN CNV                                       7
  12Q GAIN WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN CNV                                                       27
  12Q GAIN WILD-TYPE                                                216
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q GAIN CNV                                                0
  12Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q GAIN CNV                                                   0
  12Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q GAIN CNV                                    1
  12Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q GAIN CNV                                        0
  12Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q GAIN CNV                                  0                             1
  12Q GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q GAIN CNV                                                   1
  12Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12Q GAIN CNV                                       1
  12Q GAIN WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12Q GAIN CNV                                  0
  12Q GAIN WILD-TYPE                            3
D24V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN CNV         4  20   4   2
  12Q GAIN WILD-TYPE  76 149  18  14
D24V6, multiclass
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  T1            4                 76
  T2           20                149
  T3            4                 18
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  12Q GAIN CNV        13   8     9
  12Q GAIN WILD-TYPE 159  50    43
D24V7, multiclass
       clus
vv      12Q GAIN CNV 12Q GAIN WILD-TYPE
  N0              13                159
  N1               8                 50
  N2+N3            9                 43
                    vv
clus                  M0  M1  MX
  12Q GAIN CNV        22   2   5
  12Q GAIN WILD-TYPE 180  14  58
D24V8, multiclass
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  M0           22                180
  M1            2                 14
  MX            5                 58
                    vv
clus                   I  II III  IV
  12Q GAIN CNV         9   9  10   2
  12Q GAIN WILD-TYPE 140  52  47  14
D24V9, multiclass
     clus
vv    12Q GAIN CNV 12Q GAIN WILD-TYPE
  I              9                140
  II             9                 52
  III           10                 47
  IV             2                 14
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          1   39
  12Q GAIN WILD-TYPE   19  330
     clus
vv    12Q GAIN CNV 12Q GAIN WILD-TYPE
  NO             1                 19
  YES           39                330
D24V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q GAIN CNV                                                 9
  12Q GAIN WILD-TYPE                                          91
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q GAIN CNV                                            5             13
  12Q GAIN WILD-TYPE                                     72             49
                    vv
clus                 LIFELONG NON-SMOKER
  12Q GAIN CNV                         3
  12Q GAIN WILD-TYPE                  33
D24V12, multiclass
                                             clus
vv                                            12Q GAIN CNV 12Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9                 91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5                 72
  CURRENT SMOKER                                        13                 49
  LIFELONG NON-SMOKER                                    3                 33
D24V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN CNV        24   1   1   1
  12Q GAIN WILD-TYPE 209   8   3  13
D24V14, multiclass
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  R0           24                209
  R1            1                  8
  R2            1                  3
  RX            1                 13

Clustering(25) Variable = 13q gain
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN CNV         7   4
  13Q GAIN WILD-TYPE 257  81
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                11                338 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 4                 81 
$`13Q GAIN CNV`
TCGA-38-4631 TCGA-44-7671 TCGA-53-7624 TCGA-55-7910 TCGA-64-1680 TCGA-67-3771 
       11.64        17.59        35.11         6.48        37.02         1.97 
TCGA-73-4677 TCGA-78-7149 TCGA-78-7220 TCGA-78-7537 TCGA-97-7547 
        1.25        35.93        26.53        53.33        47.18 

$`13Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.31        18.87        17.46        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
      223.96         8.48        88.11        31.20         8.02        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
        0.23         1.12         0.46         0.62         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              1.25               0.03 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             53.33             223.96 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             26.53               7.92 
[1] "1.2 - 53.3 (26.5)" "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"13Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          7    7
  13Q GAIN WILD-TYPE  204  171
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  FEMALE            7                204
  MALE              7                171
D25V4, continuous
[1] "Remove cluster labels:" "13Q GAIN CNV"          
clus
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"13Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q GAIN CNV                                0
  13Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q GAIN CNV                                       5
  13Q GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN CNV                                                        8
  13Q GAIN WILD-TYPE                                                235
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q GAIN CNV                                                0
  13Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q GAIN CNV                                                   0
  13Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q GAIN CNV                                    0
  13Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q GAIN CNV                                        0
  13Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q GAIN CNV                                  0                             1
  13Q GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q GAIN CNV                                                   0
  13Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  13Q GAIN CNV                                       0
  13Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  13Q GAIN CNV                                  0
  13Q GAIN WILD-TYPE                            3
D25V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN CNV         1  12   0   1
  13Q GAIN WILD-TYPE  79 157  22  15
D25V6, multiclass
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  T1            1                 79
  T2           12                157
  T3            0                 22
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  13Q GAIN CNV        10   1     3
  13Q GAIN WILD-TYPE 162  57    49
D25V7, multiclass
       clus
vv      13Q GAIN CNV 13Q GAIN WILD-TYPE
  N0              10                162
  N1               1                 57
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  13Q GAIN CNV        11   2   1
  13Q GAIN WILD-TYPE 191  14  62
D25V8, multiclass
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  M0           11                191
  M1            2                 14
  MX            1                 62
                    vv
clus                   I  II III  IV
  13Q GAIN CNV         7   2   3   2
  13Q GAIN WILD-TYPE 142  59  54  14
D25V9, multiclass
     clus
vv    13Q GAIN CNV 13Q GAIN WILD-TYPE
  I              7                142
  II             2                 59
  III            3                 54
  IV             2                 14
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          1   13
  13Q GAIN WILD-TYPE   19  356
     clus
vv    13Q GAIN CNV 13Q GAIN WILD-TYPE
  NO             1                 19
  YES           13                356
D25V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q GAIN CNV                                                 3
  13Q GAIN WILD-TYPE                                          97
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q GAIN CNV                                            5              5
  13Q GAIN WILD-TYPE                                     72             57
                    vv
clus                 LIFELONG NON-SMOKER
  13Q GAIN CNV                         1
  13Q GAIN WILD-TYPE                  35
D25V12, multiclass
                                             clus
vv                                            13Q GAIN CNV 13Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3                 97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5                 72
  CURRENT SMOKER                                         5                 57
  LIFELONG NON-SMOKER                                    1                 35
D25V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN CNV        12   0   0   0
  13Q GAIN WILD-TYPE 221   9   4  14
D25V14, multiclass
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  R0           12                221
  R1            0                  9
  R2            0                  4
  RX            0                 14

Clustering(26) Variable = 14q gain
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN CNV        25  10
  14Q GAIN WILD-TYPE 239  75
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                35                314 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                10                 75 
$`14Q GAIN CNV`
TCGA-05-4390 TCGA-35-5375 TCGA-38-4629 TCGA-44-2659 TCGA-44-6147 TCGA-44-6779 
       37.02         8.68        28.37        17.39         7.76        16.41 
TCGA-44-8119 TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-50-6590 TCGA-50-6591 
        3.22         2.50        76.21        28.57        42.31         3.88 
TCGA-50-6594 TCGA-50-7109 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6971 
       12.16         8.38         2.86         0.07        15.25         0.92 
TCGA-55-7910 TCGA-55-A490 TCGA-64-5774 TCGA-64-5775 TCGA-69-7973 TCGA-71-6725 
        6.48         1.58        83.84         0.10         7.56         2.01 
TCGA-73-4677 TCGA-73-7499 TCGA-78-7159 TCGA-78-7161 TCGA-86-7955 TCGA-86-8358 
        1.25        17.06        40.11         7.04         0.46         0.62 
TCGA-91-6828 TCGA-91-6836 TCGA-91-6847 TCGA-97-7546 TCGA-97-8179 
        1.22         0.36        26.93        31.66         0.49 

$`14Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        8.52         8.38         6.64         8.09         4.44         3.75 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 TCGA-50-6593 
        9.37         4.44        12.26        11.47        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        48.62        45.17        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       42.48        40.70        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.95         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 
       39.09        55.40        37.02        44.38        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         4.24         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         4.21        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       32.09         5.88        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        0.23         1.12         0.62         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 
        1.41         0.85         0.76         0.69         0.53         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.99         1.28        41.33         0.03         1.28         1.15 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.72         3.48         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              0.07               0.03 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
             83.84             223.96 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              7.56               8.09 
[1] "0.1 - 83.8 (7.6)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
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        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"14Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV         25   16
  14Q GAIN WILD-TYPE  186  162
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  FEMALE           25                186
  MALE             16                162
D26V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q GAIN CNV                                2
  14Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q GAIN CNV                                       5
  14Q GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN CNV                                                       29
  14Q GAIN WILD-TYPE                                                214
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q GAIN CNV                                                1
  14Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q GAIN CNV                                                   0
  14Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q GAIN CNV                                    0
  14Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q GAIN CNV                                        1
  14Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q GAIN CNV                                  0                             2
  14Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q GAIN CNV                                                   1
  14Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  14Q GAIN CNV                                       0
  14Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  14Q GAIN CNV                                  0
  14Q GAIN WILD-TYPE                            3
D26V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN CNV        13  16   3   1
  14Q GAIN WILD-TYPE  67 153  19  15
D26V6, multiclass
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  T1           13                 67
  T2           16                153
  T3            3                 19
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  14Q GAIN CNV        23   5     3
  14Q GAIN WILD-TYPE 149  53    49
D26V7, multiclass
       clus
vv      14Q GAIN CNV 14Q GAIN WILD-TYPE
  N0              23                149
  N1               5                 53
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  14Q GAIN CNV        21   1  10
  14Q GAIN WILD-TYPE 181  15  53
D26V8, multiclass
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  M0           21                181
  M1            1                 15
  MX           10                 53
                    vv
clus                   I  II III  IV
  14Q GAIN CNV        20   7   4   1
  14Q GAIN WILD-TYPE 129  54  53  15
D26V9, multiclass
     clus
vv    14Q GAIN CNV 14Q GAIN WILD-TYPE
  I             20                129
  II             7                 54
  III            4                 53
  IV             1                 15
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          0   41
  14Q GAIN WILD-TYPE   20  328
     clus
vv    14Q GAIN CNV 14Q GAIN WILD-TYPE
  NO             0                 20
  YES           41                328
D26V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q GAIN CNV                                                15
  14Q GAIN WILD-TYPE                                          85
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q GAIN CNV                                            9              6
  14Q GAIN WILD-TYPE                                     68             56
                    vv
clus                 LIFELONG NON-SMOKER
  14Q GAIN CNV                         3
  14Q GAIN WILD-TYPE                  33
D26V12, multiclass
                                             clus
vv                                            14Q GAIN CNV 14Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           15                 85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9                 68
  CURRENT SMOKER                                         6                 56
  LIFELONG NON-SMOKER                                    3                 33
D26V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN CNV        21   1   0   2
  14Q GAIN WILD-TYPE 212   8   4  12
D26V14, multiclass
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  R0           21                212
  R1            1                  8
  R2            0                  4
  RX            2                 12

Clustering(27) Variable = 15q gain
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN CNV         8   1
  15Q GAIN WILD-TYPE 256  84
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 9                340 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 1                 84 
$`15Q GAIN CNV`
TCGA-05-4420 TCGA-44-5645 TCGA-50-5944 TCGA-55-1594 TCGA-71-6725 TCGA-73-4670 
       29.95         6.84        12.26        38.73         2.01         0.46 
TCGA-78-7149 TCGA-78-7220 TCGA-78-7540 
       35.93        26.53        28.96 

$`15Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 
        2.93        12.56         3.25         2.50         4.21        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              0.46               0.03 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             38.73             223.96 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             26.53               8.02 
[1] "0.5 - 38.7 (26.5)" "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"15Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          6    4
  15Q GAIN WILD-TYPE  205  174
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  FEMALE            6                205
  MALE              4                174
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN CNV"          
clus
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q GAIN CNV                                1
  15Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q GAIN CNV                                       4
  15Q GAIN WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN CNV                                                        3
  15Q GAIN WILD-TYPE                                                240
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q GAIN CNV                                                1
  15Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q GAIN CNV                                                   0
  15Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q GAIN CNV                                    0
  15Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q GAIN CNV                                        0
  15Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q GAIN CNV                                  0                             1
  15Q GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q GAIN CNV                                                   0
  15Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  15Q GAIN CNV                                       0
  15Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  15Q GAIN CNV                                  0
  15Q GAIN WILD-TYPE                            3
D27V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN CNV         2   6   0   1
  15Q GAIN WILD-TYPE  78 163  22  15
D27V6, multiclass
    clus
vv   15Q GAIN CNV 15Q GAIN WILD-TYPE
  T1            2                 78
  T2            6                163
  T3            0                 22
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  15Q GAIN CNV         7   0     2
  15Q GAIN WILD-TYPE 165  58    50
D27V7, multiclass
       clus
vv      15Q GAIN CNV 15Q GAIN WILD-TYPE
  N0               7                165
  N1               0                 58
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  15Q GAIN CNV         7   1   1
  15Q GAIN WILD-TYPE 195  15  62
D27V8, multiclass
    clus
vv   15Q GAIN CNV 15Q GAIN WILD-TYPE
  M0            7                195
  M1            1                 15
  MX            1                 62
                    vv
clus                   I  II III  IV
  15Q GAIN CNV         6   0   3   1
  15Q GAIN WILD-TYPE 143  61  54  15
D27V9, multiclass
     clus
vv    15Q GAIN CNV 15Q GAIN WILD-TYPE
  I              6                143
  II             0                 61
  III            3                 54
  IV             1                 15
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          0   10
  15Q GAIN WILD-TYPE   20  359
     clus
vv    15Q GAIN CNV 15Q GAIN WILD-TYPE
  NO             0                 20
  YES           10                359
D27V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q GAIN CNV                                                 1
  15Q GAIN WILD-TYPE                                          99
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q GAIN CNV                                            2              5
  15Q GAIN WILD-TYPE                                     75             57
                    vv
clus                 LIFELONG NON-SMOKER
  15Q GAIN CNV                         1
  15Q GAIN WILD-TYPE                  35
D27V12, multiclass
                                             clus
vv                                            15Q GAIN CNV 15Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1                 99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2                 75
  CURRENT SMOKER                                         5                 57
  LIFELONG NON-SMOKER                                    1                 35
D27V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN CNV         7   0   0   1
  15Q GAIN WILD-TYPE 226   9   4  13
D27V14, multiclass
    clus
vv   15Q GAIN CNV 15Q GAIN WILD-TYPE
  R0            7                226
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(28) Variable = 16p gain
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN CNV        37  12
  16P GAIN WILD-TYPE 227  73
      16P GAIN CNV 16P GAIN WILD-TYPE 
                49                300 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                12                 73 
$`16P GAIN CNV`
TCGA-05-4249 TCGA-05-4390 TCGA-05-5423 TCGA-38-4628 TCGA-38-4629 TCGA-44-2665 
       38.07        37.02         4.96        49.02        28.37        13.15 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 
       16.37         6.84         7.76         2.70        16.41        18.87 
TCGA-44-A4SU TCGA-49-4490 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 
        2.50        12.66        14.07        29.75        77.88         2.20 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7910 TCGA-55-8097 TCGA-55-A490 TCGA-64-1679 
        0.59         0.13         6.48         0.49         1.58        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 TCGA-67-6217 TCGA-69-7760 TCGA-69-7980 
       37.02        44.38         0.59        13.87         5.06        12.56 
TCGA-73-4668 TCGA-73-4675 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 TCGA-78-7163 
       15.35         1.32        39.48        19.50        32.09       223.96 
TCGA-78-7542 TCGA-86-7955 TCGA-86-8075 TCGA-86-8278 TCGA-86-8279 TCGA-86-8359 
       10.55         0.46         1.41         0.76         0.69         0.85 
TCGA-86-8668 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-8177 TCGA-97-8179 
        1.45         1.32        31.66        47.18         4.80         0.49 
TCGA-MN-A4N4 
       20.42 

$`16P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
        4.60         3.48         0.30         3.35         9.93         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        5.42        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
        3.75        76.21        28.11        28.57        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        7.76        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       71.05        38.47         1.12         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.13         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
       17.75        56.81        20.65        39.09        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89         0.69         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        20.28         0.46         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 
       35.93        21.86        24.99        38.50         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29         7.04       104.15         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
       31.20         8.02        53.33        10.75        28.96        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       13.81         0.36         0.89         0.23         1.12         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8280 TCGA-86-8358 
        0.33         0.43         0.79         0.85         0.53         0.62 
TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.12         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7948 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        4.34        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-99-7458 TCGA-99-8025 
        0.72         3.48         5.95         5.36         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 

      16P GAIN CNV 16P GAIN WILD-TYPE 
              0.13               0.03 
      16P GAIN CNV 16P GAIN WILD-TYPE 
            223.96             163.10 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             12.56               8.02 
[1] "0.1 - 224.0 (12.6)" "0.0 - 163.1 (8.0)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
      "16P GAIN CNV"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "16P GAIN CNV" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "16P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
      "16P GAIN CNV"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "16P GAIN CNV" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "16P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
      "16P GAIN CNV"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "16P GAIN CNV" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"       "16P GAIN CNV"       "16P GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "16P GAIN CNV"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "16P GAIN CNV" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV         28   25
  16P GAIN WILD-TYPE  183  153
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  FEMALE           28                183
  MALE             25                153
D28V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P GAIN CNV                                3
  16P GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P GAIN CNV                                       7
  16P GAIN WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN CNV                                                       38
  16P GAIN WILD-TYPE                                                205
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P GAIN CNV                                                1
  16P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P GAIN CNV                                                   1
  16P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P GAIN CNV                                    0
  16P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P GAIN CNV                                        1
  16P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P GAIN CNV                                  0                             1
  16P GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P GAIN CNV                                                   0
  16P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16P GAIN CNV                                       0
  16P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16P GAIN CNV                                  1
  16P GAIN WILD-TYPE                            2
D28V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN CNV         8  23   5   2
  16P GAIN WILD-TYPE  72 146  17  14
D28V6, multiclass
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  T1            8                 72
  T2           23                146
  T3            5                 17
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  16P GAIN CNV        20  10     7
  16P GAIN WILD-TYPE 152  48    45
D28V7, multiclass
       clus
vv      16P GAIN CNV 16P GAIN WILD-TYPE
  N0              20                152
  N1              10                 48
  N2+N3            7                 45
                    vv
clus                  M0  M1  MX
  16P GAIN CNV        26   3   7
  16P GAIN WILD-TYPE 176  13  56
D28V8, multiclass
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  M0           26                176
  M1            3                 13
  MX            7                 56
                    vv
clus                   I  II III  IV
  16P GAIN CNV        18  11   6   3
  16P GAIN WILD-TYPE 131  50  51  13
D28V9, multiclass
     clus
vv    16P GAIN CNV 16P GAIN WILD-TYPE
  I             18                131
  II            11                 50
  III            6                 51
  IV             3                 13
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          3   50
  16P GAIN WILD-TYPE   17  319
     clus
vv    16P GAIN CNV 16P GAIN WILD-TYPE
  NO             3                 17
  YES           50                319
D28V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P GAIN CNV                                                13
  16P GAIN WILD-TYPE                                          87
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P GAIN CNV                                           15              4
  16P GAIN WILD-TYPE                                     62             58
                    vv
clus                 LIFELONG NON-SMOKER
  16P GAIN CNV                         6
  16P GAIN WILD-TYPE                  30
D28V12, multiclass
                                             clus
vv                                            16P GAIN CNV 16P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13                 87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                15                 62
  CURRENT SMOKER                                         4                 58
  LIFELONG NON-SMOKER                                    6                 30
D28V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN CNV        31   0   0   4
  16P GAIN WILD-TYPE 202   9   4  10
D28V14, multiclass
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  R0           31                202
  R1            0                  9
  R2            0                  4
  RX            4                 10

Clustering(29) Variable = 16q gain
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN CNV        21   9
  16Q GAIN WILD-TYPE 243  76
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                30                319 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 9                 76 
$`16Q GAIN CNV`
TCGA-05-4249 TCGA-05-5423 TCGA-38-4629 TCGA-44-2665 TCGA-44-5645 TCGA-44-6147 
       38.07         4.96        28.37        13.15         6.84         7.76 
TCGA-44-6779 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-55-8089 
       16.41        14.07        29.75        77.88         2.20         3.02 
TCGA-55-8097 TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 TCGA-69-7760 TCGA-69-7980 
        0.49        56.81        44.38        13.87         5.06        12.56 
TCGA-73-4668 TCGA-78-7145 TCGA-78-7154 TCGA-78-7163 TCGA-78-7542 TCGA-86-7955 
       15.35        27.16        19.50       223.96        10.55         0.46 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8668 TCGA-97-7547 TCGA-97-8179 TCGA-MN-A4N4 
        0.76         0.69         1.45        47.18         0.49        20.42 

$`16Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        6.44         6.21         4.60         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 
        0.69         0.20         0.85         0.13         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89         0.69         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        24.99        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 
        0.85         0.53         0.62         0.85         1.12         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.72         3.48         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 
        0.20 

      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              0.46               0.03 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
            223.96             163.10 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
             13.51               7.82 
[1] "0.5 - 224.0 (13.5)" "0.0 - 163.1 (7.8)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV"       "16Q GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "16Q GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
      "16Q GAIN CNV" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV         16   19
  16Q GAIN WILD-TYPE  195  159
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  FEMALE           16                195
  MALE             19                159
D29V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q GAIN CNV                                2
  16Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q GAIN CNV                                       1
  16Q GAIN WILD-TYPE                                78
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN CNV                                                       27
  16Q GAIN WILD-TYPE                                                216
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q GAIN CNV                                                1
  16Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q GAIN CNV                                                   1
  16Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q GAIN CNV                                    0
  16Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q GAIN CNV                                        1
  16Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q GAIN CNV                                  0                             1
  16Q GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q GAIN CNV                                                   0
  16Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16Q GAIN CNV                                       0
  16Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16Q GAIN CNV                                  1
  16Q GAIN WILD-TYPE                            2
D29V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN CNV         4  16   3   2
  16Q GAIN WILD-TYPE  76 153  19  14
D29V6, multiclass
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  T1            4                 76
  T2           16                153
  T3            3                 19
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  16Q GAIN CNV        14   7     3
  16Q GAIN WILD-TYPE 158  51    49
D29V7, multiclass
       clus
vv      16Q GAIN CNV 16Q GAIN WILD-TYPE
  N0              14                158
  N1               7                 51
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  16Q GAIN CNV        21   1   3
  16Q GAIN WILD-TYPE 181  15  60
D29V8, multiclass
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  M0           21                181
  M1            1                 15
  MX            3                 60
                    vv
clus                   I  II III  IV
  16Q GAIN CNV        14   8   3   1
  16Q GAIN WILD-TYPE 135  53  54  15
D29V9, multiclass
     clus
vv    16Q GAIN CNV 16Q GAIN WILD-TYPE
  I             14                135
  II             8                 53
  III            3                 54
  IV             1                 15
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          1   34
  16Q GAIN WILD-TYPE   19  335
     clus
vv    16Q GAIN CNV 16Q GAIN WILD-TYPE
  NO             1                 19
  YES           34                335
D29V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q GAIN CNV                                                 7
  16Q GAIN WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q GAIN CNV                                           10              4
  16Q GAIN WILD-TYPE                                     67             58
                    vv
clus                 LIFELONG NON-SMOKER
  16Q GAIN CNV                         4
  16Q GAIN WILD-TYPE                  32
D29V12, multiclass
                                             clus
vv                                            16Q GAIN CNV 16Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10                 67
  CURRENT SMOKER                                         4                 58
  LIFELONG NON-SMOKER                                    4                 32
D29V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN CNV        23   1   0   1
  16Q GAIN WILD-TYPE 210   8   4  13
D29V14, multiclass
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  R0           23                210
  R1            1                  8
  R2            0                  4
  RX            1                 13

Clustering(30) Variable = 17p gain
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN CNV        19   3
  17P GAIN WILD-TYPE 245  82
      17P GAIN CNV 17P GAIN WILD-TYPE 
                22                327 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 3                 82 
$`17P GAIN CNV`
TCGA-05-4382 TCGA-35-5375 TCGA-38-4628 TCGA-44-6148 TCGA-50-5935 TCGA-55-7907 
       19.92         8.68        49.02         3.12        21.47         0.53 
TCGA-55-8094 TCGA-55-8615 TCGA-55-A494 TCGA-64-1680 TCGA-69-7980 TCGA-73-4666 
        0.13         0.49         0.16        37.02        12.56        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-78-7149 TCGA-78-7220 TCGA-86-7713 TCGA-86-8669 
        1.32         4.01        35.93        26.53         0.23         1.08 
TCGA-91-6835 TCGA-95-7043 TCGA-97-8179 TCGA-L9-A443 
        1.15         0.07         0.49         3.81 

$`17P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 
        6.84         0.30         3.35         9.93         7.76         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 
        7.46         0.30         0.10         4.80         6.97         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 
       23.38        29.95        15.35         0.46         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        1.12         0.46         0.62         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        1.41         0.85         0.76         0.69         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        0.85         1.12         1.45         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         0.20        20.42 

      17P GAIN CNV 17P GAIN WILD-TYPE 
              0.07               0.03 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             49.02             223.96 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             3.465              8.090 
[1] "0.1 - 49.0 (3.5)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
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        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
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        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
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        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
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        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
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        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
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        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
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        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
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        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
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        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
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        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
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        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
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        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
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        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
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        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"       "17P GAIN CNV"       "17P GAIN CNV" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
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        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
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        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
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        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
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        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
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        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
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        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
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        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
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        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
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        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
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        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
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        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
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        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
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        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
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        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
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        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
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        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
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        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
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        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
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        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
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        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
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        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
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        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
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        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
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        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
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        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
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        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
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        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
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        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
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        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
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        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
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        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"       "17P GAIN CNV"       "17P GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"       "17P GAIN CNV"       "17P GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          9   14
  17P GAIN WILD-TYPE  202  164
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  FEMALE            9                202
  MALE             14                164
D30V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P GAIN CNV                                1
  17P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P GAIN CNV                                       5
  17P GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN CNV                                                       16
  17P GAIN WILD-TYPE                                                227
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P GAIN CNV                                                0
  17P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P GAIN CNV                                                   0
  17P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P GAIN CNV                                    0
  17P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P GAIN CNV                                        0
  17P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P GAIN CNV                                  1                             0
  17P GAIN WILD-TYPE                            1                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P GAIN CNV                                                   0
  17P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17P GAIN CNV                                       0
  17P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17P GAIN CNV                                  0
  17P GAIN WILD-TYPE                            3
D30V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN CNV         5   9   1   1
  17P GAIN WILD-TYPE  75 160  21  15
D30V6, multiclass
    clus
vv   17P GAIN CNV 17P GAIN WILD-TYPE
  T1            5                 75
  T2            9                160
  T3            1                 21
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  17P GAIN CNV         8   5     3
  17P GAIN WILD-TYPE 164  53    49
D30V7, multiclass
       clus
vv      17P GAIN CNV 17P GAIN WILD-TYPE
  N0               8                164
  N1               5                 53
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  17P GAIN CNV        11   2   3
  17P GAIN WILD-TYPE 191  14  60
D30V8, multiclass
    clus
vv   17P GAIN CNV 17P GAIN WILD-TYPE
  M0           11                191
  M1            2                 14
  MX            3                 60
                    vv
clus                   I  II III  IV
  17P GAIN CNV         6   4   4   2
  17P GAIN WILD-TYPE 143  57  53  14
D30V9, multiclass
     clus
vv    17P GAIN CNV 17P GAIN WILD-TYPE
  I              6                143
  II             4                 57
  III            4                 53
  IV             2                 14
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          4   19
  17P GAIN WILD-TYPE   16  350
     clus
vv    17P GAIN CNV 17P GAIN WILD-TYPE
  NO             4                 16
  YES           19                350
D30V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P GAIN CNV                                                 5
  17P GAIN WILD-TYPE                                          95
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P GAIN CNV                                            5              2
  17P GAIN WILD-TYPE                                     72             60
                    vv
clus                 LIFELONG NON-SMOKER
  17P GAIN CNV                         3
  17P GAIN WILD-TYPE                  33
D30V12, multiclass
                                             clus
vv                                            17P GAIN CNV 17P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5                 95
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5                 72
  CURRENT SMOKER                                         2                 60
  LIFELONG NON-SMOKER                                    3                 33
D30V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN CNV        16   0   0   2
  17P GAIN WILD-TYPE 217   9   4  12
D30V14, multiclass
    clus
vv   17P GAIN CNV 17P GAIN WILD-TYPE
  R0           16                217
  R1            0                  9
  R2            0                  4
  RX            2                 12

Clustering(31) Variable = 17q gain
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN CNV        49  14
  17Q GAIN WILD-TYPE 215  71
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                63                286 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                14                 71 
$`17Q GAIN CNV`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4424 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        3.98        19.92        30.02        49.02        28.37        44.61 
TCGA-44-3919 TCGA-44-6144 TCGA-44-6148 TCGA-44-6777 TCGA-44-7662 TCGA-44-7667 
        6.21         0.30         3.12        32.45         1.64        18.31 
TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 TCGA-50-5935 TCGA-50-6591 TCGA-50-6593 
       17.46         8.52         3.22        21.47         3.88        11.05 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-55-7281 TCGA-55-7903 TCGA-55-7907 
       12.16        48.62         2.86         0.59         0.62         0.53 
TCGA-55-7911 TCGA-55-8094 TCGA-55-8514 TCGA-55-8615 TCGA-55-A490 TCGA-55-A494 
        0.69         0.13         6.97         0.49         1.58         0.16 
TCGA-62-A470 TCGA-64-1680 TCGA-67-6215 TCGA-69-7760 TCGA-69-7974 TCGA-69-7980 
       39.22        37.02         0.89         5.06         6.05        12.56 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 
        2.01        29.95        20.28         1.32         4.01        17.06 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7161 TCGA-78-7220 TCGA-78-7539 
       27.16        19.27        35.93         7.04        26.53        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7713 TCGA-86-7955 TCGA-86-8055 TCGA-86-8075 
       10.55        32.68         0.23         0.46         0.33         1.41 
TCGA-86-8358 TCGA-86-8668 TCGA-86-8669 TCGA-91-6835 TCGA-91-6836 TCGA-95-7043 
        0.62         1.45         1.08         1.15         0.36         0.07 
TCGA-97-8179 TCGA-99-8025 TCGA-L9-A443 
        0.49        14.04         3.81 

$`17Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.44         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         6.84         3.35         9.93         7.76 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        63.72        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-A479 
        5.33         5.03        18.87        17.59        13.74         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        38.73        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7910 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.79         1.78         6.48         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.85         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.30         0.10         4.80         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 
        5.29        68.81        47.77        19.53        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        0.59         2.04         0.59         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         4.24         7.56         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        3.25         2.50         4.21        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 
        0.46         1.25        20.42       163.10         5.65        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-83-5908 
       88.11        31.20         8.02        53.33        28.96        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 
        0.36         0.89         1.12         0.62         0.43         0.79 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.69         0.53         0.85         1.12 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
       41.33         0.03         1.28        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.95         5.36         4.80         8.22        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         0.20        20.42 

      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              0.07               0.03 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
             49.02             223.96 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              5.06               8.35 
[1] "0.1 - 49.0 (5.1)"  "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"17Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV"       "17Q GAIN CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
      "17Q GAIN CNV"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV         36   31
  17Q GAIN WILD-TYPE  175  147
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  FEMALE           36                175
  MALE             31                147
D31V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q GAIN CNV                                3
  17Q GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q GAIN CNV                                      13
  17Q GAIN WILD-TYPE                                66
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN CNV                                                       46
  17Q GAIN WILD-TYPE                                                197
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q GAIN CNV                                                1
  17Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q GAIN CNV                                                   0
  17Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q GAIN CNV                                    1
  17Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q GAIN CNV                                        0
  17Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q GAIN CNV                                  1                             1
  17Q GAIN WILD-TYPE                            1                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q GAIN CNV                                                   1
  17Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17Q GAIN CNV                                       0
  17Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17Q GAIN CNV                                  0
  17Q GAIN WILD-TYPE                            3
D31V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN CNV        16  21   8   2
  17Q GAIN WILD-TYPE  64 148  14  14
D31V6, multiclass
    clus
vv   17Q GAIN CNV 17Q GAIN WILD-TYPE
  T1           16                 64
  T2           21                148
  T3            8                 14
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  17Q GAIN CNV        30  11     5
  17Q GAIN WILD-TYPE 142  47    47
D31V7, multiclass
       clus
vv      17Q GAIN CNV 17Q GAIN WILD-TYPE
  N0              30                142
  N1              11                 47
  N2+N3            5                 47
                    vv
clus                  M0  M1  MX
  17Q GAIN CNV        30   7   9
  17Q GAIN WILD-TYPE 172   9  54
D31V8, multiclass
    clus
vv   17Q GAIN CNV 17Q GAIN WILD-TYPE
  M0           30                172
  M1            7                  9
  MX            9                 54
                    vv
clus                   I  II III  IV
  17Q GAIN CNV        21  12   6   7
  17Q GAIN WILD-TYPE 128  49  51   9
D31V9, multiclass
     clus
vv    17Q GAIN CNV 17Q GAIN WILD-TYPE
  I             21                128
  II            12                 49
  III            6                 51
  IV             7                  9
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          7   60
  17Q GAIN WILD-TYPE   13  309
     clus
vv    17Q GAIN CNV 17Q GAIN WILD-TYPE
  NO             7                 13
  YES           60                309
D31V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q GAIN CNV                                                18
  17Q GAIN WILD-TYPE                                          82
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q GAIN CNV                                            9             12
  17Q GAIN WILD-TYPE                                     68             50
                    vv
clus                 LIFELONG NON-SMOKER
  17Q GAIN CNV                         7
  17Q GAIN WILD-TYPE                  29
D31V12, multiclass
                                             clus
vv                                            17Q GAIN CNV 17Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           18                 82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9                 68
  CURRENT SMOKER                                        12                 50
  LIFELONG NON-SMOKER                                    7                 29
D31V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN CNV        37   4   1   6
  17Q GAIN WILD-TYPE 196   5   3   8
D31V14, multiclass
    clus
vv   17Q GAIN CNV 17Q GAIN WILD-TYPE
  R0           37                196
  R1            4                  5
  R2            1                  3
  RX            6                  8

Clustering(32) Variable = 18p gain
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN CNV        30   6
  18P GAIN WILD-TYPE 234  79
      18P GAIN CNV 18P GAIN WILD-TYPE 
                36                313 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                 6                 79 
$`18P GAIN CNV`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       29.95        30.02        25.02        13.74         8.52         3.22 
TCGA-50-6591 TCGA-50-7109 TCGA-55-6970 TCGA-55-A494 TCGA-62-8399 TCGA-64-5775 
        3.88         8.38        15.25         0.16        68.81         0.10 
TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 
       16.67        13.61         7.56        12.56         1.32         4.01 
TCGA-78-7147 TCGA-78-7155 TCGA-78-7539 TCGA-78-7542 TCGA-86-7713 TCGA-86-7955 
       19.27        38.50        10.75        10.55         0.23         0.46 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8359 TCGA-86-8585 TCGA-95-7944 
        0.62         0.33         1.41         0.85         1.12         0.69 
TCGA-95-7947 TCGA-97-7546 TCGA-97-8179 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        1.32        31.66         0.49         3.81         0.20        20.42 

$`18P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
       17.46        17.59         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.03         0.92         5.29        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       44.38        83.84        30.44        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 
       13.87         5.06         6.12        22.68         4.24         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       53.33        28.96        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        1.12         0.43         0.79         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.53         0.62         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36         4.34        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

      18P GAIN CNV 18P GAIN WILD-TYPE 
              0.10               0.03 
      18P GAIN CNV 18P GAIN WILD-TYPE 
             68.81             223.96 
      18P GAIN CNV 18P GAIN WILD-TYPE 
             5.785              8.090 
[1] "0.1 - 68.8 (5.8)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "18P GAIN CNV"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-MN-A4N4 
      "18P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "18P GAIN CNV"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-MN-A4N4 
      "18P GAIN CNV" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "18P GAIN CNV"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-MN-A4N4 
      "18P GAIN CNV" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV         15   23
  18P GAIN WILD-TYPE  196  155
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  FEMALE           15                196
  MALE             23                155
D32V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P GAIN CNV                                4
  18P GAIN WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P GAIN CNV                                       8
  18P GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN CNV                                                       23
  18P GAIN WILD-TYPE                                                220
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P GAIN CNV                                                0
  18P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P GAIN CNV                                                   0
  18P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P GAIN CNV                                    0
  18P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P GAIN CNV                                        0
  18P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P GAIN CNV                                  0                             2
  18P GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P GAIN CNV                                                   1
  18P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18P GAIN CNV                                       0
  18P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18P GAIN CNV                                  0
  18P GAIN WILD-TYPE                            3
D32V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN CNV         5  12   2   1
  18P GAIN WILD-TYPE  75 157  20  15
D32V6, multiclass
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  T1            5                 75
  T2           12                157
  T3            2                 20
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  18P GAIN CNV        14   4     2
  18P GAIN WILD-TYPE 158  54    50
D32V7, multiclass
       clus
vv      18P GAIN CNV 18P GAIN WILD-TYPE
  N0              14                158
  N1               4                 54
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  18P GAIN CNV        16   1   3
  18P GAIN WILD-TYPE 186  15  60
D32V8, multiclass
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  M0           16                186
  M1            1                 15
  MX            3                 60
                    vv
clus                   I  II III  IV
  18P GAIN CNV        10   5   4   1
  18P GAIN WILD-TYPE 139  56  53  15
D32V9, multiclass
     clus
vv    18P GAIN CNV 18P GAIN WILD-TYPE
  I             10                139
  II             5                 56
  III            4                 53
  IV             1                 15
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          1   37
  18P GAIN WILD-TYPE   19  332
     clus
vv    18P GAIN CNV 18P GAIN WILD-TYPE
  NO             1                 19
  YES           37                332
D32V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P GAIN CNV                                                 7
  18P GAIN WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P GAIN CNV                                            4              6
  18P GAIN WILD-TYPE                                     73             56
                    vv
clus                 LIFELONG NON-SMOKER
  18P GAIN CNV                         3
  18P GAIN WILD-TYPE                  33
D32V12, multiclass
                                             clus
vv                                            18P GAIN CNV 18P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                         6                 56
  LIFELONG NON-SMOKER                                    3                 33
D32V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN CNV        24   1   0   2
  18P GAIN WILD-TYPE 209   8   4  12
D32V14, multiclass
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  R0           24                209
  R1            1                  8
  R2            0                  4
  RX            2                 12

Clustering(33) Variable = 18q gain
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN CNV        19   4
  18Q GAIN WILD-TYPE 245  81
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                23                326 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 4                 81 
$`18Q GAIN CNV`
TCGA-05-4390 TCGA-05-4420 TCGA-44-6778 TCGA-44-8119 TCGA-50-6591 TCGA-55-6970 
       37.02        29.95        36.49         3.22         3.88        15.25 
TCGA-55-A494 TCGA-62-8399 TCGA-64-1678 TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 
        0.16        68.81        39.09        16.67        13.61         7.56 
TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 TCGA-78-7155 TCGA-78-7542 TCGA-86-7713 
       12.56         1.32         4.01        38.50        10.55         0.23 
TCGA-86-7955 TCGA-86-8075 TCGA-86-8358 TCGA-86-8359 TCGA-97-7546 
        0.46         1.41         0.62         0.85        31.66 

$`18Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47A 
       17.46        17.59        13.74         8.52         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 
       22.68         4.24         6.05         2.30         2.93         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28        15.35         0.46         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
       28.96        32.68        13.81         0.36         0.89         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.43         0.79         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.69         0.53         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7547 
        0.07         5.36         0.69         1.32         4.34        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              0.16               0.03 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             68.81             223.96 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
            10.550              8.035 
[1] "0.2 - 68.8 (10.6)" "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV"       "18Q GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"18Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV"       "18Q GAIN CNV" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV"       "18Q GAIN CNV" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"18Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          9   14
  18Q GAIN WILD-TYPE  202  164
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  FEMALE            9                202
  MALE             14                164
D33V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q GAIN CNV                                2
  18Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q GAIN CNV                                       4
  18Q GAIN WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN CNV                                                       15
  18Q GAIN WILD-TYPE                                                228
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q GAIN CNV                                                0
  18Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q GAIN CNV                                                   0
  18Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q GAIN CNV                                    0
  18Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q GAIN CNV                                        0
  18Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q GAIN CNV                                  0                             2
  18Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q GAIN CNV                                                   0
  18Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18Q GAIN CNV                                       0
  18Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18Q GAIN CNV                                  0
  18Q GAIN WILD-TYPE                            3
D33V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN CNV         3  10   1   0
  18Q GAIN WILD-TYPE  77 159  21  16
D33V6, multiclass
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  T1            3                 77
  T2           10                159
  T3            1                 21
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  18Q GAIN CNV        10   2     2
  18Q GAIN WILD-TYPE 162  56    50
D33V7, multiclass
       clus
vv      18Q GAIN CNV 18Q GAIN WILD-TYPE
  N0              10                162
  N1               2                 56
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  18Q GAIN CNV        10   1   3
  18Q GAIN WILD-TYPE 192  15  60
D33V8, multiclass
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  M0           10                192
  M1            1                 15
  MX            3                 60
                    vv
clus                   I  II III  IV
  18Q GAIN CNV         8   2   3   1
  18Q GAIN WILD-TYPE 141  59  54  15
D33V9, multiclass
     clus
vv    18Q GAIN CNV 18Q GAIN WILD-TYPE
  I              8                141
  II             2                 59
  III            3                 54
  IV             1                 15
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          1   22
  18Q GAIN WILD-TYPE   19  347
     clus
vv    18Q GAIN CNV 18Q GAIN WILD-TYPE
  NO             1                 19
  YES           22                347
D33V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q GAIN CNV                                                 7
  18Q GAIN WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q GAIN CNV                                            3              2
  18Q GAIN WILD-TYPE                                     74             60
                    vv
clus                 LIFELONG NON-SMOKER
  18Q GAIN CNV                         2
  18Q GAIN WILD-TYPE                  34
D33V12, multiclass
                                             clus
vv                                            18Q GAIN CNV 18Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3                 74
  CURRENT SMOKER                                         2                 60
  LIFELONG NON-SMOKER                                    2                 34
D33V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN CNV        13   0   0   2
  18Q GAIN WILD-TYPE 220   9   4  12
D33V14, multiclass
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  R0           13                220
  R1            0                  9
  R2            0                  4
  RX            2                 12

Clustering(34) Variable = 19p gain
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN CNV         6   0
  19P GAIN WILD-TYPE 258  85
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 6                343 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 0                 85 
$`19P GAIN CNV`
TCGA-44-2662 TCGA-44-2665 TCGA-53-7624 TCGA-55-8620 TCGA-69-8253 TCGA-73-4675 
       15.78        13.15        35.11         2.14         3.25         1.32 

$`19P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 
       19.10        13.15        17.39         3.39         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        20.28        15.35         0.46         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      19P GAIN CNV 19P GAIN WILD-TYPE 
              1.32               0.03 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             35.11             223.96 
      19P GAIN CNV 19P GAIN WILD-TYPE 
              8.20               8.05 
[1] "1.3 - 35.1 (8.2)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" 
[1] "hr="     "9100000"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          3    3
  19P GAIN WILD-TYPE  208  175
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  FEMALE            3                208
  MALE              3                175
D34V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P GAIN CNV                                0
  19P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P GAIN CNV                                       1
  19P GAIN WILD-TYPE                                78
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN CNV                                                        5
  19P GAIN WILD-TYPE                                                238
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P GAIN CNV                                                0
  19P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P GAIN CNV                                                   0
  19P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P GAIN CNV                                    0
  19P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P GAIN CNV                                        0
  19P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P GAIN CNV                                  0                             0
  19P GAIN WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P GAIN CNV                                                   0
  19P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19P GAIN CNV                                       0
  19P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19P GAIN CNV                                  0
  19P GAIN WILD-TYPE                            3
D34V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN CNV         0   3   1   0
  19P GAIN WILD-TYPE  80 166  21  16
D34V6, multiclass
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  T1            0                 80
  T2            3                166
  T3            1                 21
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  19P GAIN CNV         2   2     0
  19P GAIN WILD-TYPE 170  56    52
D34V7, multiclass
       clus
vv      19P GAIN CNV 19P GAIN WILD-TYPE
  N0               2                170
  N1               2                 56
  N2+N3            0                 52
                    vv
clus                  M0  M1  MX
  19P GAIN CNV         3   1   0
  19P GAIN WILD-TYPE 199  15  63
D34V8, multiclass
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  M0            3                199
  M1            1                 15
  MX            0                 63
                    vv
clus                   I  II III  IV
  19P GAIN CNV         1   1   1   1
  19P GAIN WILD-TYPE 148  60  56  15
D34V9, multiclass
     clus
vv    19P GAIN CNV 19P GAIN WILD-TYPE
  I              1                148
  II             1                 60
  III            1                 56
  IV             1                 15
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          0    6
  19P GAIN WILD-TYPE   20  363
     clus
vv    19P GAIN CNV 19P GAIN WILD-TYPE
  NO             0                 20
  YES            6                363
D34V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P GAIN CNV                                                 1
  19P GAIN WILD-TYPE                                          99
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P GAIN CNV                                            1              1
  19P GAIN WILD-TYPE                                     76             61
                    vv
clus                 LIFELONG NON-SMOKER
  19P GAIN CNV                         1
  19P GAIN WILD-TYPE                  35
D34V12, multiclass
                                             clus
vv                                            19P GAIN CNV 19P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1                 99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1                 76
  CURRENT SMOKER                                         1                 61
  LIFELONG NON-SMOKER                                    1                 35
D34V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN CNV         4   0   0   1
  19P GAIN WILD-TYPE 229   9   4  13
D34V14, multiclass
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  R0            4                229
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(35) Variable = 19q gain
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN CNV        16   3
  19Q GAIN WILD-TYPE 248  82
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                19                330 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 3                 82 
$`19Q GAIN CNV`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2662 TCGA-44-6776 TCGA-50-6594 TCGA-53-7624 
        8.68        11.64        15.78        63.72        12.16        35.11 
TCGA-55-7907 TCGA-55-8092 TCGA-55-8615 TCGA-55-8620 TCGA-69-7764 TCGA-69-7980 
        0.53         0.85         0.49         2.14        13.61        12.56 
TCGA-69-8253 TCGA-73-4675 TCGA-78-7150 TCGA-86-8585 TCGA-91-6830 TCGA-95-7043 
        3.25         1.32        21.86         1.12         0.03         0.07 
TCGA-99-8025 
       14.04 

$`19Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       20.28        15.35         0.46         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.53         0.62         0.85         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        5.95         5.36         4.80         0.49         8.22        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 

      19Q GAIN CNV 19Q GAIN WILD-TYPE 
              0.03               0.03 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             63.72             223.96 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             8.680              8.035 
[1] "0.0 - 63.7 (8.7)"  "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          9   10
  19Q GAIN WILD-TYPE  202  168
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  FEMALE            9                202
  MALE             10                168
D35V4, continuous
[1] "Remove cluster labels:" "19Q GAIN CNV"          
clus
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-99-7458 
"19Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q GAIN CNV                                0
  19Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q GAIN CNV                                       3
  19Q GAIN WILD-TYPE                                76
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN CNV                                                       15
  19Q GAIN WILD-TYPE                                                228
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q GAIN CNV                                                0
  19Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q GAIN CNV                                                   0
  19Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q GAIN CNV                                    0
  19Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q GAIN CNV                                        0
  19Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q GAIN CNV                                  0                             0
  19Q GAIN WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q GAIN CNV                                                   1
  19Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19Q GAIN CNV                                       0
  19Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19Q GAIN CNV                                  0
  19Q GAIN WILD-TYPE                            3
D35V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN CNV         4   6   2   0
  19Q GAIN WILD-TYPE  76 163  20  16
D35V6, multiclass
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  T1            4                 76
  T2            6                163
  T3            2                 20
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  19Q GAIN CNV         6   4     2
  19Q GAIN WILD-TYPE 166  54    50
D35V7, multiclass
       clus
vv      19Q GAIN CNV 19Q GAIN WILD-TYPE
  N0               6                166
  N1               4                 54
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  19Q GAIN CNV         7   1   4
  19Q GAIN WILD-TYPE 195  15  59
D35V8, multiclass
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  M0            7                195
  M1            1                 15
  MX            4                 59
                    vv
clus                   I  II III  IV
  19Q GAIN CNV         5   3   3   1
  19Q GAIN WILD-TYPE 144  58  54  15
D35V9, multiclass
     clus
vv    19Q GAIN CNV 19Q GAIN WILD-TYPE
  I              5                144
  II             3                 58
  III            3                 54
  IV             1                 15
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          0   19
  19Q GAIN WILD-TYPE   20  350
     clus
vv    19Q GAIN CNV 19Q GAIN WILD-TYPE
  NO             0                 20
  YES           19                350
D35V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q GAIN CNV                                                 7
  19Q GAIN WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q GAIN CNV                                            4              1
  19Q GAIN WILD-TYPE                                     73             61
                    vv
clus                 LIFELONG NON-SMOKER
  19Q GAIN CNV                         0
  19Q GAIN WILD-TYPE                  36
D35V12, multiclass
                                             clus
vv                                            19Q GAIN CNV 19Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                         1                 61
  LIFELONG NON-SMOKER                                    0                 36
D35V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN CNV        11   0   0   1
  19Q GAIN WILD-TYPE 222   9   4  13
D35V14, multiclass
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  R0           11                222
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(36) Variable = 20p gain
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN CNV        38  12
  20P GAIN WILD-TYPE 226  73
      20P GAIN CNV 20P GAIN WILD-TYPE 
                50                299 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                12                 73 
$`20P GAIN CNV`
TCGA-05-4250 TCGA-05-4417 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
        3.98        14.93        30.02        25.02        25.02         2.96 
TCGA-35-5375 TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-7660 TCGA-44-7669 
        8.68        16.37         6.84         7.76         5.33        18.87 
TCGA-44-7671 TCGA-44-8119 TCGA-44-A479 TCGA-44-A4SU TCGA-50-5045 TCGA-50-5931 
       17.59         3.22         8.38         2.50        71.47         8.78 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 
       11.47        42.31         3.88        23.05         2.86         0.07 
TCGA-55-6969 TCGA-55-6970 TCGA-55-7726 TCGA-55-8514 TCGA-55-8615 TCGA-55-A48Z 
       40.70        15.25         1.02         6.97         0.49         0.95 
TCGA-55-A494 TCGA-62-8399 TCGA-64-1677 TCGA-67-3771 TCGA-69-7763 TCGA-69-7980 
        0.16        68.81        20.65         1.97        22.68        12.56 
TCGA-69-8253 TCGA-71-6725 TCGA-73-4662 TCGA-78-7153 TCGA-78-7155 TCGA-78-7163 
        3.25         2.01        29.95        24.99        38.50       223.96 
TCGA-78-7220 TCGA-78-7536 TCGA-86-8054 TCGA-91-6836 TCGA-91-6847 TCGA-93-8067 
       26.53         8.02         0.62         0.36        26.93         6.08 
TCGA-97-7937 TCGA-97-8179 
        5.95         0.49 

$`20P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        3.48         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 
        5.03         1.64        18.31        17.46        13.74         8.52 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 
        6.64         8.09         4.44         3.75        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93         0.03        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       12.26        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 
       48.62        45.17        32.61         0.79        42.48         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        0.10         4.80         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.08         1.02         1.58         0.03         0.92         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       47.77        19.53        39.22        17.75        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        2.50         4.21        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        19.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
       22.29         7.04       104.15         8.48        88.11        31.20 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.46         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 
       41.33         0.03         1.28         1.15         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       43.76         8.65         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        5.36         4.80         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      20P GAIN CNV 20P GAIN WILD-TYPE 
              0.07               0.03 
      20P GAIN CNV 20P GAIN WILD-TYPE 
            223.96             163.10 
      20P GAIN CNV 20P GAIN WILD-TYPE 
              8.53               8.02 
[1] "0.1 - 224.0 (8.5)" "0.0 - 163.1 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         29   23
  20P GAIN WILD-TYPE  182  155
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  FEMALE           29                182
  MALE             23                155
D36V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P GAIN CNV                                2
  20P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P GAIN CNV                                      12
  20P GAIN WILD-TYPE                                67
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN CNV                                                       33
  20P GAIN WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P GAIN CNV                                                1
  20P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P GAIN CNV                                                   0
  20P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P GAIN CNV                                    0
  20P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P GAIN CNV                                        1
  20P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P GAIN CNV                                  0                             3
  20P GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P GAIN CNV                                                   0
  20P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20P GAIN CNV                                       0
  20P GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20P GAIN CNV                                  0
  20P GAIN WILD-TYPE                            3
D36V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN CNV        10  25   2   0
  20P GAIN WILD-TYPE  70 144  20  16
D36V6, multiclass
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  T1           10                 70
  T2           25                144
  T3            2                 20
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  20P GAIN CNV        25   6     5
  20P GAIN WILD-TYPE 147  52    47
D36V7, multiclass
       clus
vv      20P GAIN CNV 20P GAIN WILD-TYPE
  N0              25                147
  N1               6                 52
  N2+N3            5                 47
                    vv
clus                  M0  M1  MX
  20P GAIN CNV        26   1   8
  20P GAIN WILD-TYPE 176  15  55
D36V8, multiclass
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  M0           26                176
  M1            1                 15
  MX            8                 55
                    vv
clus                   I  II III  IV
  20P GAIN CNV        26   4   6   1
  20P GAIN WILD-TYPE 123  57  51  15
D36V9, multiclass
     clus
vv    20P GAIN CNV 20P GAIN WILD-TYPE
  I             26                123
  II             4                 57
  III            6                 51
  IV             1                 15
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV          3   49
  20P GAIN WILD-TYPE   17  320
     clus
vv    20P GAIN CNV 20P GAIN WILD-TYPE
  NO             3                 17
  YES           49                320
D36V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P GAIN CNV                                                17
  20P GAIN WILD-TYPE                                          83
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P GAIN CNV                                            9              9
  20P GAIN WILD-TYPE                                     68             53
                    vv
clus                 LIFELONG NON-SMOKER
  20P GAIN CNV                         1
  20P GAIN WILD-TYPE                  35
D36V12, multiclass
                                             clus
vv                                            20P GAIN CNV 20P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           17                 83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9                 68
  CURRENT SMOKER                                         9                 53
  LIFELONG NON-SMOKER                                    1                 35
D36V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN CNV        25   1   1   2
  20P GAIN WILD-TYPE 208   8   3  12
D36V14, multiclass
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  R0           25                208
  R1            1                  8
  R2            1                  3
  RX            2                 12

Clustering(37) Variable = 20q gain
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN CNV        47  17
  20Q GAIN WILD-TYPE 217  68
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                64                285 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                17                 68 
$`20Q GAIN CNV`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
        3.98        24.03        29.95        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5425 TCGA-35-5375 TCGA-38-4629 TCGA-44-5645 TCGA-44-6147 
        4.96         2.96         8.68        28.37         6.84         7.76 
TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 
        5.33        18.87        17.46        17.59         8.52         3.22 
TCGA-44-A479 TCGA-44-A4SU TCGA-49-4487 TCGA-49-4512 TCGA-50-5931 TCGA-50-5946 
        8.38         2.50        28.11        29.75         8.78        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6969 
       42.31         3.88        23.05        38.73         0.07        40.70 
TCGA-55-6970 TCGA-55-7726 TCGA-55-7910 TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 
       15.25         1.02         6.48         6.97         0.49         2.14 
TCGA-55-A48Z TCGA-62-8399 TCGA-64-1677 TCGA-64-1681 TCGA-64-5774 TCGA-67-3771 
        0.95        68.81        20.65        44.38        83.84         1.97 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8255 TCGA-71-6725 TCGA-78-7153 
        2.93        12.56         3.25         4.21         2.01        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-86-8054 
       19.50        38.50       223.96        26.53         8.02         0.62 
TCGA-86-8279 TCGA-91-6836 TCGA-91-6847 TCGA-91-7771 TCGA-93-8067 TCGA-95-7567 
        0.69         0.36        26.93         1.02         6.08         5.36 
TCGA-95-7947 TCGA-97-7937 TCGA-97-8179 TCGA-L4-A4E5 
        1.32         5.95         0.49         6.97 

$`20Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07        19.92        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 
       26.01        24.00        15.02         1.02         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        6.44         6.21         4.60         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7672 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       18.31        13.74         6.64         8.09         4.44         3.75 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
        4.44        12.26        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62        45.17         2.86        32.61         0.79        42.48 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        0.10         4.80         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         1.58         0.03         0.92         0.16         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       47.77        19.53        39.22        17.75        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-8254 TCGA-73-4658 
        4.24         7.56         6.05         2.30         2.50        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
        8.48        88.11        31.20        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.46         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        4.18         0.92         9.76         4.18         1.12         0.07 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        8.65         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.03         3.72         9.44         9.27         7.82         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              0.07               0.03 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
            223.96             163.10 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              8.20               8.05 
[1] "0.1 - 224.0 (8.2)" "0.0 - 163.1 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"20Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         33   34
  20Q GAIN WILD-TYPE  178  144
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  FEMALE           33                178
  MALE             34                144
D37V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q GAIN CNV                                3
  20Q GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q GAIN CNV                                      15
  20Q GAIN WILD-TYPE                                64
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN CNV                                                       43
  20Q GAIN WILD-TYPE                                                200
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q GAIN CNV                                                1
  20Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q GAIN CNV                                                   0
  20Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q GAIN CNV                                    0
  20Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q GAIN CNV                                        1
  20Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q GAIN CNV                                  0                             3
  20Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q GAIN CNV                                                   1
  20Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20Q GAIN CNV                                       0
  20Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20Q GAIN CNV                                  0
  20Q GAIN WILD-TYPE                            3
D37V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN CNV        10  31   5   0
  20Q GAIN WILD-TYPE  70 138  17  16
D37V6, multiclass
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  T1           10                 70
  T2           31                138
  T3            5                 17
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  20Q GAIN CNV        28   8     9
  20Q GAIN WILD-TYPE 144  50    43
D37V7, multiclass
       clus
vv      20Q GAIN CNV 20Q GAIN WILD-TYPE
  N0              28                144
  N1               8                 50
  N2+N3            9                 43
                    vv
clus                  M0  M1  MX
  20Q GAIN CNV        34   1  10
  20Q GAIN WILD-TYPE 168  15  53
D37V8, multiclass
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  M0           34                168
  M1            1                 15
  MX           10                 53
                    vv
clus                   I  II III  IV
  20Q GAIN CNV        25  10  10   1
  20Q GAIN WILD-TYPE 124  51  47  15
D37V9, multiclass
     clus
vv    20Q GAIN CNV 20Q GAIN WILD-TYPE
  I             25                124
  II            10                 51
  III           10                 47
  IV             1                 15
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV          1   66
  20Q GAIN WILD-TYPE   19  303
     clus
vv    20Q GAIN CNV 20Q GAIN WILD-TYPE
  NO             1                 19
  YES           66                303
D37V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q GAIN CNV                                                22
  20Q GAIN WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q GAIN CNV                                           10             12
  20Q GAIN WILD-TYPE                                     67             50
                    vv
clus                 LIFELONG NON-SMOKER
  20Q GAIN CNV                         2
  20Q GAIN WILD-TYPE                  34
D37V12, multiclass
                                             clus
vv                                            20Q GAIN CNV 20Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           22                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10                 67
  CURRENT SMOKER                                        12                 50
  LIFELONG NON-SMOKER                                    2                 34
D37V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN CNV        36   1   1   2
  20Q GAIN WILD-TYPE 197   8   3  12
D37V14, multiclass
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  R0           36                197
  R1            1                  8
  R2            1                  3
  RX            2                 12

Clustering(38) Variable = 21q gain
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN CNV        19  11
  21Q GAIN WILD-TYPE 245  74
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                30                319 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                11                 74 
$`21Q GAIN CNV`
TCGA-05-5423 TCGA-38-4628 TCGA-38-6178 TCGA-44-6147 TCGA-44-A47A TCGA-49-4488 
        4.96        49.02         5.19         7.76         6.64        28.57 
TCGA-49-4501 TCGA-49-4512 TCGA-50-5941 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 
       46.72        29.75         9.37        12.16        33.37         0.72 
TCGA-55-7914 TCGA-55-A48Z TCGA-62-8399 TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 
        0.10         0.95        68.81        39.09        37.02         1.97 
TCGA-71-6725 TCGA-73-4677 TCGA-73-7499 TCGA-78-7147 TCGA-78-7155 TCGA-78-7163 
        2.01         1.25        17.06        19.27        38.50       223.96 
TCGA-78-7535 TCGA-78-7542 TCGA-86-8279 TCGA-86-8358 TCGA-97-8179 TCGA-L9-A444 
       31.20        10.55         0.69         0.62         0.49         0.20 

$`21Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47F 
       17.59        13.74         8.52         3.22         8.38         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
        4.44         3.75         2.50        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       35.54        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 
        3.88        25.51        11.05         6.21         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         6.48         0.69         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-A46O 
        1.58         0.03         0.92         0.16         5.29        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       19.53        39.22        17.75        56.81        20.65        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        3.25         2.50         4.21        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       20.28        15.35         0.46         1.32         4.01        20.42 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        19.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29         7.04       104.15         8.48        88.11        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        10.75        28.96        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.53         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.72         3.48         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-MN-A4N4 
       20.42 

      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              0.10               0.03 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
            223.96             163.10 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              9.96               8.02 
[1] "0.1 - 224.0 (10.0)" "0.0 - 163.1 (8.0)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-MN-A4N4 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV         22   12
  21Q GAIN WILD-TYPE  189  166
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  FEMALE           22                189
  MALE             12                166
D38V4, continuous
[1] "Remove cluster labels:" "21Q GAIN CNV"          
clus
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 2                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-64-1677         TCGA-64-1681 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-73-4659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-86-7955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q GAIN CNV                                1
  21Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q GAIN CNV                                       5
  21Q GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN CNV                                                       25
  21Q GAIN WILD-TYPE                                                218
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q GAIN CNV                                                0
  21Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q GAIN CNV                                                   0
  21Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q GAIN CNV                                    0
  21Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q GAIN CNV                                        1
  21Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q GAIN CNV                                  0                             2
  21Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q GAIN CNV                                                   0
  21Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  21Q GAIN CNV                                       0
  21Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  21Q GAIN CNV                                  0
  21Q GAIN WILD-TYPE                            3
D38V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN CNV         7  18   1   0
  21Q GAIN WILD-TYPE  73 151  21  16
D38V6, multiclass
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  T1            7                 73
  T2           18                151
  T3            1                 21
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  21Q GAIN CNV        13   6     6
  21Q GAIN WILD-TYPE 159  52    46
D38V7, multiclass
       clus
vv      21Q GAIN CNV 21Q GAIN WILD-TYPE
  N0              13                159
  N1               6                 52
  N2+N3            6                 46
                    vv
clus                  M0  M1  MX
  21Q GAIN CNV        21   1   3
  21Q GAIN WILD-TYPE 181  15  60
D38V8, multiclass
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  M0           21                181
  M1            1                 15
  MX            3                 60
                    vv
clus                   I  II III  IV
  21Q GAIN CNV        13   7   5   1
  21Q GAIN WILD-TYPE 136  54  52  15
D38V9, multiclass
     clus
vv    21Q GAIN CNV 21Q GAIN WILD-TYPE
  I             13                136
  II             7                 54
  III            5                 52
  IV             1                 15
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          1   33
  21Q GAIN WILD-TYPE   19  336
     clus
vv    21Q GAIN CNV 21Q GAIN WILD-TYPE
  NO             1                 19
  YES           33                336
D38V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q GAIN CNV                                                 4
  21Q GAIN WILD-TYPE                                          96
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q GAIN CNV                                            7              7
  21Q GAIN WILD-TYPE                                     70             55
                    vv
clus                 LIFELONG NON-SMOKER
  21Q GAIN CNV                         8
  21Q GAIN WILD-TYPE                  28
D38V12, multiclass
                                             clus
vv                                            21Q GAIN CNV 21Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4                 96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 7                 70
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    8                 28
D38V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN CNV        25   1   0   1
  21Q GAIN WILD-TYPE 208   8   4  13
D38V14, multiclass
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  R0           25                208
  R1            1                  8
  R2            0                  4
  RX            1                 13

Clustering(39) Variable = 22q gain
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN CNV         8   4
  22Q GAIN WILD-TYPE 256  81
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                12                337 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 4                 81 
$`22Q GAIN CNV`
TCGA-05-4420 TCGA-38-4625 TCGA-44-7670 TCGA-49-4490 TCGA-50-5931 TCGA-55-1592 
       29.95        47.61        17.46        12.66         8.78        23.05 
TCGA-55-7726 TCGA-55-7907 TCGA-55-8514 TCGA-73-4675 TCGA-78-7150 TCGA-J2-A4AE 
        1.02         0.53         6.97         1.32        21.86         9.27 

$`22Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.87        17.59        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        13.74        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
       27.16         5.65        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        1.12         0.46         0.62         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        1.41         0.85         0.76         0.69         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              0.53               0.03 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             47.61             223.96 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
            10.965              8.020 
[1] "0.5 - 47.6 (11.0)" "0.0 - 224.0 (8.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MN-A4N4 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          9    6
  22Q GAIN WILD-TYPE  202  172
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  FEMALE            9                202
  MALE              6                172
D39V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q GAIN CNV                                0
  22Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q GAIN CNV                                       1
  22Q GAIN WILD-TYPE                                78
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN CNV                                                       13
  22Q GAIN WILD-TYPE                                                230
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q GAIN CNV                                                0
  22Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q GAIN CNV                                                   0
  22Q GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q GAIN CNV                                    0
  22Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q GAIN CNV                                        1
  22Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q GAIN CNV                                  0                             0
  22Q GAIN WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q GAIN CNV                                                   0
  22Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  22Q GAIN CNV                                       0
  22Q GAIN WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  22Q GAIN CNV                                  0
  22Q GAIN WILD-TYPE                            3
D39V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN CNV         1   9   2   0
  22Q GAIN WILD-TYPE  79 160  20  16
D39V6, multiclass
    clus
vv   22Q GAIN CNV 22Q GAIN WILD-TYPE
  T1            1                 79
  T2            9                160
  T3            2                 20
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  22Q GAIN CNV         4   6     2
  22Q GAIN WILD-TYPE 168  52    50
D39V7, multiclass
       clus
vv      22Q GAIN CNV 22Q GAIN WILD-TYPE
  N0               4                168
  N1               6                 52
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  22Q GAIN CNV        11   0   1
  22Q GAIN WILD-TYPE 191  16  62
D39V8, multiclass
    clus
vv   22Q GAIN CNV 22Q GAIN WILD-TYPE
  M0           11                191
  M1            0                 16
  MX            1                 62
                    vv
clus                   I  II III  IV
  22Q GAIN CNV         4   5   3   0
  22Q GAIN WILD-TYPE 145  56  54  16
D39V9, multiclass
     clus
vv    22Q GAIN CNV 22Q GAIN WILD-TYPE
  I              4                145
  II             5                 56
  III            3                 54
  IV             0                 16
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          1   14
  22Q GAIN WILD-TYPE   19  355
     clus
vv    22Q GAIN CNV 22Q GAIN WILD-TYPE
  NO             1                 19
  YES           14                355
D39V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q GAIN CNV                                                 3
  22Q GAIN WILD-TYPE                                          97
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q GAIN CNV                                            2              3
  22Q GAIN WILD-TYPE                                     75             59
                    vv
clus                 LIFELONG NON-SMOKER
  22Q GAIN CNV                         3
  22Q GAIN WILD-TYPE                  33
D39V12, multiclass
                                             clus
vv                                            22Q GAIN CNV 22Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3                 97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2                 75
  CURRENT SMOKER                                         3                 59
  LIFELONG NON-SMOKER                                    3                 33
D39V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN CNV        11   0   0   1
  22Q GAIN WILD-TYPE 222   9   4  13
D39V14, multiclass
    clus
vv   22Q GAIN CNV 22Q GAIN WILD-TYPE
  R0           11                222
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(40) Variable = Xq gain
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN CNV        14   2
  XQ GAIN WILD-TYPE 250  83
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               16               333 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                83 
$`XQ GAIN CNV`
TCGA-05-4426 TCGA-44-2659 TCGA-50-5933 TCGA-55-6543 TCGA-55-7726 TCGA-55-7907 
       26.01        17.39        77.88         0.07         1.02         0.53 
TCGA-55-8094 TCGA-64-1676 TCGA-69-7980 TCGA-78-7154 TCGA-78-7539 TCGA-86-8055 
        0.13        56.81        12.56        19.50        10.75         0.33 
TCGA-86-8358 TCGA-95-7043 TCGA-95-7567 TCGA-97-8179 
        0.62         0.07         5.36         0.49 

$`XQ GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         2.86        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
       88.11        26.53        31.20         8.02        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.46         0.62         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.69         0.53         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        4.18         6.08         1.12         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      XQ GAIN CNV XQ GAIN WILD-TYPE 
             0.07              0.03 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
            77.88            223.96 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
             3.19              8.09 
[1] "0.1 - 77.9 (3.2)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          7   11
  XQ GAIN WILD-TYPE  204  167
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  FEMALE           7               204
  MALE            11               167
D40V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ GAIN CNV                                1
  XQ GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ GAIN CNV                                       4
  XQ GAIN WILD-TYPE                                75
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN CNV                                                       12
  XQ GAIN WILD-TYPE                                                231
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ GAIN CNV                                                1
  XQ GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ GAIN CNV                                                   0
  XQ GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ GAIN CNV                                    0
  XQ GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ GAIN CNV                                        0
  XQ GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ GAIN CNV                                  0                             0
  XQ GAIN WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ GAIN CNV                                                   0
  XQ GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  XQ GAIN CNV                                       0
  XQ GAIN WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  XQ GAIN CNV                                  0
  XQ GAIN WILD-TYPE                            3
D40V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN CNV         4   6   1   1
  XQ GAIN WILD-TYPE  76 163  21  15
D40V6, multiclass
    clus
vv   XQ GAIN CNV XQ GAIN WILD-TYPE
  T1           4                76
  T2           6               163
  T3           1                21
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  XQ GAIN CNV         6   3     3
  XQ GAIN WILD-TYPE 166  55    49
D40V7, multiclass
       clus
vv      XQ GAIN CNV XQ GAIN WILD-TYPE
  N0              6               166
  N1              3                55
  N2+N3           3                49
                   vv
clus                 M0  M1  MX
  XQ GAIN CNV         8   1   2
  XQ GAIN WILD-TYPE 194  15  61
D40V8, multiclass
    clus
vv   XQ GAIN CNV XQ GAIN WILD-TYPE
  M0           8               194
  M1           1                15
  MX           2                61
                   vv
clus                  I  II III  IV
  XQ GAIN CNV         5   3   2   1
  XQ GAIN WILD-TYPE 144  58  55  15
D40V9, multiclass
     clus
vv    XQ GAIN CNV XQ GAIN WILD-TYPE
  I             5               144
  II            3                58
  III           2                55
  IV            1                15
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          1   17
  XQ GAIN WILD-TYPE   19  352
     clus
vv    XQ GAIN CNV XQ GAIN WILD-TYPE
  NO            1                19
  YES          17               352
D40V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ GAIN CNV                                                 5
  XQ GAIN WILD-TYPE                                          95
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ GAIN CNV                                            5              1
  XQ GAIN WILD-TYPE                                     72             61
                   vv
clus                LIFELONG NON-SMOKER
  XQ GAIN CNV                         0
  XQ GAIN WILD-TYPE                  36
D40V12, multiclass
                                             clus
vv                                            XQ GAIN CNV XQ GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           5                95
  CURRENT REFORMED SMOKER FOR > 15 YEARS                5                72
  CURRENT SMOKER                                        1                61
  LIFELONG NON-SMOKER                                   0                36
D40V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN CNV        11   0   0   1
  XQ GAIN WILD-TYPE 222   9   4  13
D40V14, multiclass
    clus
vv   XQ GAIN CNV XQ GAIN WILD-TYPE
  R0          11               222
  R1           0                 9
  R2           0                 4
  RX           1                13

Clustering(41) Variable = 1p loss
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS CNV        15   7
  1P LOSS WILD-TYPE 249  78
      1P LOSS CNV 1P LOSS WILD-TYPE 
               22               327 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                7                78 
$`1P LOSS CNV`
TCGA-05-4250 TCGA-44-5643 TCGA-44-6144 TCGA-44-7660 TCGA-50-5051 TCGA-50-5935 
        3.98         3.48         0.30         5.33        14.96        21.47 
TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-55-6972 TCGA-55-A492 TCGA-64-5774 
        8.45        12.16         8.38        48.49         0.03        83.84 
TCGA-69-7973 TCGA-73-4677 TCGA-78-7146 TCGA-78-7149 TCGA-78-7153 TCGA-86-8054 
        7.56         1.25         5.65        35.93        24.99         0.62 
TCGA-86-8278 TCGA-95-7043 TCGA-95-7567 TCGA-97-8174 
        0.76         0.07         5.36         5.36 

$`1P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        9.80         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87        77.88        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
        0.79        42.48        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        4.24         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       20.28        15.35         0.46         1.32         4.01        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
       17.06       163.10        27.16        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.46         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        4.18         6.08         1.12         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         3.48         5.95         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      1P LOSS CNV 1P LOSS WILD-TYPE 
             0.03              0.03 
      1P LOSS CNV 1P LOSS WILD-TYPE 
            83.84            223.96 
      1P LOSS CNV 1P LOSS WILD-TYPE 
            5.505             8.090 
[1] "0.0 - 83.8 (5.5)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "1P LOSS CNV"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "1P LOSS CNV"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "1P LOSS CNV"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV         11   15
  1P LOSS WILD-TYPE  200  163
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  FEMALE          11               200
  MALE            15               163
D41V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P LOSS CNV                                1
  1P LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P LOSS CNV                                       7
  1P LOSS WILD-TYPE                                72
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS CNV                                                       14
  1P LOSS WILD-TYPE                                                229
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P LOSS CNV                                                0
  1P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P LOSS CNV                                                   0
  1P LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P LOSS CNV                                    0
  1P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P LOSS CNV                                        0
  1P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P LOSS CNV                                  0                             2
  1P LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P LOSS CNV                                                   0
  1P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1P LOSS CNV                                       1
  1P LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1P LOSS CNV                                  1
  1P LOSS WILD-TYPE                            2
D41V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS CNV         5  13   2   1
  1P LOSS WILD-TYPE  75 156  20  15
D41V6, multiclass
    clus
vv   1P LOSS CNV 1P LOSS WILD-TYPE
  T1           5                75
  T2          13               156
  T3           2                20
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  1P LOSS CNV        13   3     5
  1P LOSS WILD-TYPE 159  55    47
D41V7, multiclass
       clus
vv      1P LOSS CNV 1P LOSS WILD-TYPE
  N0             13               159
  N1              3                55
  N2+N3           5                47
                   vv
clus                 M0  M1  MX
  1P LOSS CNV        18   0   3
  1P LOSS WILD-TYPE 184  16  60
D41V8, multiclass
    clus
vv   1P LOSS CNV 1P LOSS WILD-TYPE
  M0          18               184
  M1           0                16
  MX           3                60
                   vv
clus                  I  II III  IV
  1P LOSS CNV        13   1   7   0
  1P LOSS WILD-TYPE 136  60  50  16
D41V9, multiclass
     clus
vv    1P LOSS CNV 1P LOSS WILD-TYPE
  I            13               136
  II            1                60
  III           7                50
  IV            0                16
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          3   23
  1P LOSS WILD-TYPE   17  346
     clus
vv    1P LOSS CNV 1P LOSS WILD-TYPE
  NO            3                17
  YES          23               346
D41V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P LOSS CNV                                                 8
  1P LOSS WILD-TYPE                                          92
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P LOSS CNV                                            2              8
  1P LOSS WILD-TYPE                                     75             54
                   vv
clus                LIFELONG NON-SMOKER
  1P LOSS CNV                         1
  1P LOSS WILD-TYPE                  35
D41V12, multiclass
                                             clus
vv                                            1P LOSS CNV 1P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2                75
  CURRENT SMOKER                                        8                54
  LIFELONG NON-SMOKER                                   1                35
D41V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS CNV        12   0   1   1
  1P LOSS WILD-TYPE 221   9   3  13
D41V14, multiclass
    clus
vv   1P LOSS CNV 1P LOSS WILD-TYPE
  R0          12               221
  R1           0                 9
  R2           1                 3
  RX           1                13

Clustering(42) Variable = 1q loss
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS CNV         4   4
  1Q LOSS WILD-TYPE 260  81
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                8               341 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                4                81 
$`1Q LOSS CNV`
TCGA-44-5643 TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-78-7146 
        3.48        21.47         8.45        12.16         8.38         5.65 
TCGA-86-8278 TCGA-95-7043 
        0.76         0.07 

$`1Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        25.51        11.05         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      1Q LOSS CNV 1Q LOSS WILD-TYPE 
             0.07              0.03 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
            21.47            223.96 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
            7.015             8.050 
[1] "0.1 - 21.5 (7.0)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"1Q LOSS WILD-TYPE" 
[1] "hr=" "6.7"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          5    5
  1Q LOSS WILD-TYPE  206  173
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  FEMALE           5               206
  MALE             5               173
D42V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q LOSS CNV                                0
  1Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q LOSS CNV                                       3
  1Q LOSS WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS CNV                                                        5
  1Q LOSS WILD-TYPE                                                238
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q LOSS CNV                                                0
  1Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q LOSS CNV                                                   0
  1Q LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q LOSS CNV                                    0
  1Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q LOSS CNV                                        0
  1Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q LOSS CNV                                  0                             0
  1Q LOSS WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q LOSS CNV                                                   0
  1Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1Q LOSS CNV                                       1
  1Q LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1Q LOSS CNV                                  1
  1Q LOSS WILD-TYPE                            2
D42V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS CNV         3   5   1   0
  1Q LOSS WILD-TYPE  77 164  21  16
D42V6, multiclass
    clus
vv   1Q LOSS CNV 1Q LOSS WILD-TYPE
  T1           3                77
  T2           5               164
  T3           1                21
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  1Q LOSS CNV         5   0     4
  1Q LOSS WILD-TYPE 167  58    48
D42V7, multiclass
       clus
vv      1Q LOSS CNV 1Q LOSS WILD-TYPE
  N0              5               167
  N1              0                58
  N2+N3           4                48
                   vv
clus                 M0  M1  MX
  1Q LOSS CNV         7   0   2
  1Q LOSS WILD-TYPE 195  16  61
D42V8, multiclass
    clus
vv   1Q LOSS CNV 1Q LOSS WILD-TYPE
  M0           7               195
  M1           0                16
  MX           2                61
                   vv
clus                  I  II III  IV
  1Q LOSS CNV         5   0   4   0
  1Q LOSS WILD-TYPE 144  61  53  16
D42V9, multiclass
     clus
vv    1Q LOSS CNV 1Q LOSS WILD-TYPE
  I             5               144
  II            0                61
  III           4                53
  IV            0                16
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          2    8
  1Q LOSS WILD-TYPE   18  361
     clus
vv    1Q LOSS CNV 1Q LOSS WILD-TYPE
  NO            2                18
  YES           8               361
D42V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q LOSS CNV                                                 3
  1Q LOSS WILD-TYPE                                          97
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q LOSS CNV                                            1              3
  1Q LOSS WILD-TYPE                                     76             59
                   vv
clus                LIFELONG NON-SMOKER
  1Q LOSS CNV                         0
  1Q LOSS WILD-TYPE                  36
D42V12, multiclass
                                             clus
vv                                            1Q LOSS CNV 1Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           3                97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        3                59
  LIFELONG NON-SMOKER                                   0                36
D42V13, continuous
[1] "Remove cluster labels:" "1Q LOSS CNV"           
clus
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                2               204 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-44-A479        TCGA-44-A47A 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS        TCGA-44-A4SU 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-53-7624 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6971        TCGA-55-7283        TCGA-55-7570 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7974        TCGA-69-7979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8255        TCGA-73-4659        TCGA-73-4662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-6214        TCGA-75-7025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-75-7031        TCGA-78-7145        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7711        TCGA-86-7714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-8054        TCGA-86-8055        TCGA-86-8056 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8073        TCGA-86-8074        TCGA-86-8281        TCGA-86-8358 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8359        TCGA-86-8669        TCGA-86-8673        TCGA-86-8674 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A456        TCGA-86-A4D0        TCGA-91-6829        TCGA-91-6830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-95-7944        TCGA-95-7947        TCGA-95-7948 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8171        TCGA-97-8172        TCGA-97-8174        TCGA-97-8179 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-7458        TCGA-99-8025        TCGA-99-8028        TCGA-99-8032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS CNV         4   0   0   0
  1Q LOSS WILD-TYPE 229   9   4  14
D42V14, multiclass
    clus
vv   1Q LOSS CNV 1Q LOSS WILD-TYPE
  R0           4               229
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(43) Variable = 2p loss
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS CNV         3   1
  2P LOSS WILD-TYPE 261  84
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               345 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1                84 
$`2P LOSS CNV`
TCGA-44-2665 TCGA-50-7109 TCGA-97-8174 TCGA-L4-A4E5 
       13.15         8.38         5.36         6.97 

$`2P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       19.10        13.15        17.39         3.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 
        5.95         0.59         0.72         3.48         5.95         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.03         3.72         9.44         9.27         7.82         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      2P LOSS CNV 2P LOSS WILD-TYPE 
             5.36              0.03 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            13.15            223.96 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            7.675             8.050 
[1] "5.4 - 13.2 (7.7)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2P LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          3    2
  2P LOSS WILD-TYPE  208  176
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  FEMALE           3               208
  MALE             2               176
D43V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P LOSS CNV                                0
  2P LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P LOSS CNV                                       0
  2P LOSS WILD-TYPE                                79
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS CNV                                                        4
  2P LOSS WILD-TYPE                                                239
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P LOSS CNV                                                0
  2P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P LOSS CNV                                                   0
  2P LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P LOSS CNV                                    0
  2P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P LOSS CNV                                        0
  2P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P LOSS CNV                                  0                             1
  2P LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P LOSS CNV                                                   0
  2P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2P LOSS CNV                                       0
  2P LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2P LOSS CNV                                  0
  2P LOSS WILD-TYPE                            3
D43V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS CNV         1   2   0   0
  2P LOSS WILD-TYPE  79 167  22  16
D43V6, multiclass
    clus
vv   2P LOSS CNV 2P LOSS WILD-TYPE
  T1           1                79
  T2           2               167
  T3           0                22
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  2P LOSS CNV         2   1     0
  2P LOSS WILD-TYPE 170  57    52
D43V7, multiclass
       clus
vv      2P LOSS CNV 2P LOSS WILD-TYPE
  N0              2               170
  N1              1                57
  N2+N3           0                52
                   vv
clus                 M0  M1  MX
  2P LOSS CNV         2   0   1
  2P LOSS WILD-TYPE 200  16  62
D43V8, multiclass
    clus
vv   2P LOSS CNV 2P LOSS WILD-TYPE
  M0           2               200
  M1           0                16
  MX           1                62
                   vv
clus                  I  II III  IV
  2P LOSS CNV         2   1   0   0
  2P LOSS WILD-TYPE 147  60  57  16
D43V9, multiclass
     clus
vv    2P LOSS CNV 2P LOSS WILD-TYPE
  I             2               147
  II            1                60
  III           0                57
  IV            0                16
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          0    5
  2P LOSS WILD-TYPE   20  364
     clus
vv    2P LOSS CNV 2P LOSS WILD-TYPE
  NO            0                20
  YES           5               364
D43V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P LOSS CNV                                                 0
  2P LOSS WILD-TYPE                                         100
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P LOSS CNV                                            0              2
  2P LOSS WILD-TYPE                                     77             60
                   vv
clus                LIFELONG NON-SMOKER
  2P LOSS CNV                         1
  2P LOSS WILD-TYPE                  35
D43V12, multiclass
                                             clus
vv                                            2P LOSS CNV 2P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           0               100
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0                77
  CURRENT SMOKER                                        2                60
  LIFELONG NON-SMOKER                                   1                35
D43V13, continuous
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2               204 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-44-A479        TCGA-44-A47A 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS        TCGA-44-A4SU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-53-7624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6971        TCGA-55-7283        TCGA-55-7570 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7974        TCGA-69-7979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8255        TCGA-73-4659        TCGA-73-4662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-6214        TCGA-75-7025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-75-7027        TCGA-75-7031        TCGA-78-7145        TCGA-78-7146 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7542        TCGA-78-7633 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-83-5908        TCGA-86-6851 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7714        TCGA-86-7954        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8056        TCGA-86-8073        TCGA-86-8074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8281        TCGA-86-8358        TCGA-86-8359        TCGA-86-8669 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8673        TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6836        TCGA-93-7347 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-93-8067        TCGA-95-7567        TCGA-95-7944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-97-8171        TCGA-97-8172 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-99-7458        TCGA-99-8025        TCGA-99-8028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  2P LOSS CNV         3   0   0   0
  2P LOSS WILD-TYPE 230   9   4  14
D43V14, multiclass
    clus
vv   2P LOSS CNV 2P LOSS WILD-TYPE
  R0           3               230
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(44) Variable = 2q loss
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS CNV         2   0
  2Q LOSS WILD-TYPE 262  85
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               347 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                0                85 
$`2Q LOSS CNV`
TCGA-69-7760 TCGA-L4-A4E5 
        5.06         6.97 

$`2Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        5.29        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       13.81         0.36         0.89         0.23         1.12         0.46 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.62         0.33         0.43         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.76         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         3.81         0.20        20.42 

      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             5.06              0.03 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             6.97            223.96 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
            6.015             8.090 
[1] "5.1 - 7.0 (6.0)"   "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               347 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7973        TCGA-69-7974        TCGA-69-7978        TCGA-69-7979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7980        TCGA-69-8253        TCGA-69-8254        TCGA-69-8255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-73-7498        TCGA-73-7499 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7953        TCGA-86-7955        TCGA-86-8054        TCGA-86-8055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8073        TCGA-86-8074        TCGA-86-8075        TCGA-86-8076 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8278        TCGA-86-8279        TCGA-86-8280        TCGA-86-8358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8359        TCGA-86-8585        TCGA-86-8668        TCGA-86-8669 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8671        TCGA-86-8672        TCGA-86-A456        TCGA-86-A4D0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6848        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-93-8067        TCGA-95-7039        TCGA-95-7043 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-95-7944        TCGA-95-7947        TCGA-95-7948 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7546        TCGA-97-7547        TCGA-97-7552        TCGA-97-7553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7554        TCGA-97-7937        TCGA-97-7938        TCGA-97-7941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8171        TCGA-97-8172        TCGA-97-8174        TCGA-97-8177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-99-7458        TCGA-99-8025        TCGA-99-8028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192        TCGA-J2-8194 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
D44V2, continuous
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               356 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-49-6767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-50-6673        TCGA-50-7109 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7624        TCGA-53-7626        TCGA-53-7813        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-6642        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6981        TCGA-55-6985        TCGA-55-6987        TCGA-55-7281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472        TCGA-64-1676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7973        TCGA-69-7974        TCGA-69-7978        TCGA-69-7979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7980        TCGA-69-8253        TCGA-69-8254        TCGA-69-8255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-73-7498        TCGA-73-7499 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-6851        TCGA-86-7701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-7955        TCGA-86-8054        TCGA-86-8055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8056        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8281        TCGA-86-8358        TCGA-86-8359        TCGA-86-8585 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8668        TCGA-86-8669        TCGA-86-8671        TCGA-86-8672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8673        TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          2    1
  2Q LOSS WILD-TYPE  209  177
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  FEMALE           2               209
  MALE             1               177
D44V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q LOSS CNV                                1
  2Q LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q LOSS CNV                                       0
  2Q LOSS WILD-TYPE                                79
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS CNV                                                        2
  2Q LOSS WILD-TYPE                                                241
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q LOSS CNV                                                0
  2Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q LOSS CNV                                                   0
  2Q LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q LOSS CNV                                    0
  2Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q LOSS CNV                                        0
  2Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q LOSS CNV                                  0                             0
  2Q LOSS WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q LOSS CNV                                                   0
  2Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2Q LOSS CNV                                       0
  2Q LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2Q LOSS CNV                                  0
  2Q LOSS WILD-TYPE                            3
D44V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS CNV         0   1   1   0
  2Q LOSS WILD-TYPE  80 168  21  16
D44V6, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               285 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7727        TCGA-55-7728        TCGA-55-7815        TCGA-55-7903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7907        TCGA-55-7910        TCGA-55-7911        TCGA-55-7914 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6212        TCGA-75-6214        TCGA-75-7025        TCGA-75-7027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7030        TCGA-75-7031        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5611        TCGA-83-5908        TCGA-86-6562        TCGA-86-6851 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6840        TCGA-91-6847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6848        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7546        TCGA-97-7547        TCGA-97-7552        TCGA-97-7553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7554        TCGA-97-7937        TCGA-97-7938        TCGA-97-7941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-7458 
"2Q LOSS WILD-TYPE" 
                   vv
clus                 N0  N1 N2+N3
  2Q LOSS CNV         2   0     0
  2Q LOSS WILD-TYPE 170  58    52
D44V7, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               280 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4403 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4422        TCGA-05-4424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4426        TCGA-05-4427        TCGA-05-4430 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4432        TCGA-05-4433        TCGA-05-4434        TCGA-05-5420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5715        TCGA-35-3615        TCGA-35-4122        TCGA-35-4123 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-4627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4628        TCGA-38-4629        TCGA-38-4630        TCGA-38-4631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4632        TCGA-38-6178        TCGA-38-7271        TCGA-44-2655 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6778        TCGA-44-6779        TCGA-44-7659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7660        TCGA-44-7661        TCGA-44-7662        TCGA-44-7667 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7669        TCGA-44-7670        TCGA-44-7671        TCGA-44-7672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7727        TCGA-55-7728        TCGA-55-7815        TCGA-55-7903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7907        TCGA-55-7910        TCGA-55-7911        TCGA-55-7914 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6212        TCGA-75-6214        TCGA-75-7025        TCGA-75-7027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7030        TCGA-75-7031        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-80-5607        TCGA-80-5608        TCGA-80-5611 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-6851        TCGA-86-7701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-91-6828 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6840        TCGA-91-6847        TCGA-91-6848 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                 M0  M1  MX
  2Q LOSS CNV         2   0   0
  2Q LOSS WILD-TYPE 200  16  63
D44V8, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               279 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4631 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4632        TCGA-38-7271        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-49-6767        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6968        TCGA-55-6969        TCGA-55-6970 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6971        TCGA-55-6972        TCGA-55-6975        TCGA-55-6978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6979        TCGA-55-6980        TCGA-55-6981        TCGA-55-6982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6984        TCGA-55-6985        TCGA-55-6986 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7570        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7727        TCGA-55-7728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7815        TCGA-55-7903        TCGA-55-7907        TCGA-55-7910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7911        TCGA-55-7914        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-4679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-69-7761 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6212        TCGA-75-6214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7025        TCGA-75-7027        TCGA-75-7030        TCGA-75-7031 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-80-5611        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-6562        TCGA-86-6851        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-91-6828        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6840        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-95-7039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-97-7546        TCGA-97-7547 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                  I  II III  IV
  2Q LOSS CNV         1   1   0   0
  2Q LOSS WILD-TYPE 148  60  57  16
D44V9, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               281 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-49-6767        TCGA-50-5044 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6642        TCGA-55-6968 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6969        TCGA-55-6970        TCGA-55-6971        TCGA-55-6972 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6975        TCGA-55-6978        TCGA-55-6979        TCGA-55-6980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6981        TCGA-55-6982        TCGA-55-6983        TCGA-55-6984 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6985        TCGA-55-6986        TCGA-55-6987        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7727        TCGA-55-7728        TCGA-55-7815        TCGA-55-7903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7907        TCGA-55-7910        TCGA-55-7911        TCGA-55-7914 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6212        TCGA-75-6214        TCGA-75-7025        TCGA-75-7027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7030        TCGA-75-7031        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5611        TCGA-83-5908        TCGA-86-6562        TCGA-86-6851 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6840        TCGA-91-6847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6848        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7546        TCGA-97-7547        TCGA-97-7552        TCGA-97-7553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7554        TCGA-97-7937        TCGA-97-7938        TCGA-97-7941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-7458 
"2Q LOSS WILD-TYPE" 
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          0    3
  2Q LOSS WILD-TYPE   20  366
     clus
vv    2Q LOSS CNV 2Q LOSS WILD-TYPE
  NO            0                20
  YES           3               366
D44V11, continuous
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               272 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4422        TCGA-05-4424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4426        TCGA-05-4427        TCGA-05-4430 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4432        TCGA-05-4433        TCGA-05-4434        TCGA-05-5420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4629        TCGA-38-4631        TCGA-38-4632        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-44-8117        TCGA-44-8119        TCGA-44-A479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-49-6767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5072        TCGA-50-5931        TCGA-50-5939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-6590        TCGA-50-7109 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7624        TCGA-53-7626        TCGA-53-7813        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6971        TCGA-55-6983        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7574        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7728        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-73-4658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-75-5125        TCGA-75-5126        TCGA-75-6203 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6214        TCGA-75-7027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7031        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7542        TCGA-78-7633        TCGA-80-5607 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5608        TCGA-80-5611        TCGA-83-5908        TCGA-86-6851 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7714        TCGA-86-7954 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8056        TCGA-86-8073 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8074        TCGA-86-8281        TCGA-86-8358        TCGA-86-8359 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8673        TCGA-86-8674        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-97-7546        TCGA-97-7547 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-97-8171        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q LOSS CNV                                                 0
  2Q LOSS WILD-TYPE                                         100
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q LOSS CNV                                            0              1
  2Q LOSS WILD-TYPE                                     77             61
                   vv
clus                LIFELONG NON-SMOKER
  2Q LOSS CNV                         1
  2Q LOSS WILD-TYPE                  35
D44V12, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               273 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5644 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7671 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-49-6767        TCGA-50-5051 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5072        TCGA-50-5939        TCGA-50-5941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6985        TCGA-55-6986 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7727        TCGA-55-7728        TCGA-55-7815        TCGA-55-7903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7907        TCGA-55-7910        TCGA-55-7911        TCGA-55-7914 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6212        TCGA-75-6214        TCGA-75-7025        TCGA-75-7027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7030        TCGA-75-7031        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5611        TCGA-83-5908        TCGA-86-6562        TCGA-86-6851 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6840        TCGA-91-6847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6848        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7546        TCGA-97-7547        TCGA-97-7552        TCGA-97-7553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7554        TCGA-97-7937        TCGA-97-7938        TCGA-97-7941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-7458 
"2Q LOSS WILD-TYPE" 
D44V13, continuous
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                1               205 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-44-A479        TCGA-44-A47A 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS        TCGA-44-A4SU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6971        TCGA-55-7283        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7726 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7974        TCGA-69-7979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8255        TCGA-73-4659        TCGA-73-4662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-6214        TCGA-75-7025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7027        TCGA-75-7031        TCGA-78-7145        TCGA-78-7146 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-83-5908        TCGA-86-6851 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7714        TCGA-86-7954        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8056        TCGA-86-8073        TCGA-86-8074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8281        TCGA-86-8358        TCGA-86-8359        TCGA-86-8669 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8673        TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6836        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-93-8067        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-97-8171        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS CNV         2   0   0   0
  2Q LOSS WILD-TYPE 231   9   4  14
D44V14, multiclass
[1] "Remove cluster labels:" "2Q LOSS CNV"           
clus
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                2               258 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2657        TCGA-44-2659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-6144        TCGA-44-6148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4514        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5055        TCGA-50-5066        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-55-1592        TCGA-55-1594        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7727        TCGA-55-7728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7815        TCGA-55-7903        TCGA-55-7907        TCGA-55-7910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7911        TCGA-55-7914        TCGA-55-8087        TCGA-55-8089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8090        TCGA-55-8092        TCGA-55-8094        TCGA-55-8097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8299        TCGA-55-8301        TCGA-55-8510        TCGA-55-8511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8513        TCGA-55-8514        TCGA-55-8615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8616        TCGA-55-8619        TCGA-55-8620        TCGA-55-8621 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A491        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6212        TCGA-75-6214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7025        TCGA-75-7027        TCGA-75-7030        TCGA-75-7031 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-80-5611        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-6562        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7953        TCGA-86-7954        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8056        TCGA-86-8073        TCGA-86-8074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8075        TCGA-86-8076        TCGA-86-8278        TCGA-86-8279 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8280        TCGA-86-8358        TCGA-86-8359        TCGA-86-8585 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8668        TCGA-86-8669        TCGA-86-8671        TCGA-86-8672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8673        TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-A4AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AE        TCGA-J2-A4AG        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 

Clustering(45) Variable = 3p loss
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS CNV        48  20
  3P LOSS WILD-TYPE 216  65
      3P LOSS CNV 3P LOSS WILD-TYPE 
               68               281 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               20                65 
$`3P LOSS CNV`
TCGA-05-4397 TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-38-6178 TCGA-44-6144 
       24.03         2.96        25.02         2.04         5.19         0.30 
TCGA-44-6776 TCGA-44-7660 TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 TCGA-49-4505 
       63.72         5.33        17.46         8.52         3.22        14.07 
TCGA-49-4514 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
       43.20         8.78        35.87        21.47         8.45        15.12 
TCGA-50-6591 TCGA-50-6594 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 
        3.88        12.16        35.11        31.89        38.73        45.17 
TCGA-55-6968 TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 TCGA-55-7907 TCGA-55-7910 
       42.48         3.88         1.12         1.32         0.53         6.48 
TCGA-55-7914 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 TCGA-55-A492 TCGA-62-A46O 
        0.10         0.13         6.97         1.58         0.03        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 
       19.53        39.22        56.81        39.09        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 TCGA-69-7973 TCGA-69-7979 
        7.33         0.99         0.59        13.87         7.56         2.93 
TCGA-69-8253 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 
        3.25        29.95        20.28         0.46         5.65        20.58 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-86-8054 TCGA-86-8073 
       88.11        31.20         8.02        10.75         0.62         0.43 
TCGA-86-8278 TCGA-91-6847 TCGA-91-7771 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 
        0.76        26.93         1.02         1.12         0.07         1.32 
TCGA-95-7948 TCGA-L4-A4E5 
        4.34         6.97 

$`3P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        11.64        44.61        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 
        6.21         4.60         3.48        16.37         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       18.87        17.59        13.74         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 
       49.28         8.05         9.27        77.88         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47        42.31        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
       33.37         0.72         8.38        13.74        23.05        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
        2.86         0.07        32.61         0.79        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92        48.49         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.59         0.13         3.12         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 
        0.79         1.78         0.62         0.69         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.85         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.30         0.10         4.80         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A472 TCGA-64-1677 TCGA-64-1679 
        0.16         5.29        68.81        17.75        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 
       37.02        44.38         0.10        30.44        39.52         1.97 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68        13.61         4.24         6.05         2.30        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        2.50         4.21         2.01        52.57        23.38        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16        19.27        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 
        7.04       104.15       223.96         8.48        26.53        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.23         1.12         0.46         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         4.18         0.92         9.76         4.18         6.08 
TCGA-95-7567 TCGA-95-7944 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        5.36         0.69        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         3.81         0.20        20.42 

      3P LOSS CNV 3P LOSS WILD-TYPE 
             0.03              0.03 
      3P LOSS CNV 3P LOSS WILD-TYPE 
            88.11            223.96 
      3P LOSS CNV 3P LOSS WILD-TYPE 
             7.79              8.09 
[1] "0.0 - 88.1 (7.8)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         42   35
  3P LOSS WILD-TYPE  169  143
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  FEMALE          42               169
  MALE            35               143
D45V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P LOSS CNV                                4
  3P LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P LOSS CNV                                      18
  3P LOSS WILD-TYPE                                61
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS CNV                                                       48
  3P LOSS WILD-TYPE                                                195
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P LOSS CNV                                                0
  3P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P LOSS CNV                                                   3
  3P LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P LOSS CNV                                    0
  3P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P LOSS CNV                                        0
  3P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P LOSS CNV                                  0                             2
  3P LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P LOSS CNV                                                   0
  3P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3P LOSS CNV                                       1
  3P LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3P LOSS CNV                                  1
  3P LOSS WILD-TYPE                            2
D45V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS CNV        16  36   4   1
  3P LOSS WILD-TYPE  64 133  18  15
D45V6, multiclass
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  T1          16                64
  T2          36               133
  T3           4                18
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  3P LOSS CNV        32  15    10
  3P LOSS WILD-TYPE 140  43    42
D45V7, multiclass
       clus
vv      3P LOSS CNV 3P LOSS WILD-TYPE
  N0             32               140
  N1             15                43
  N2+N3          10                42
                   vv
clus                 M0  M1  MX
  3P LOSS CNV        39   6  10
  3P LOSS WILD-TYPE 163  10  53
D45V8, multiclass
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  M0          39               163
  M1           6                10
  MX          10                53
                   vv
clus                  I  II III  IV
  3P LOSS CNV        21  21   9   5
  3P LOSS WILD-TYPE 128  40  48  11
D45V9, multiclass
     clus
vv    3P LOSS CNV 3P LOSS WILD-TYPE
  I            21               128
  II           21                40
  III           9                48
  IV            5                11
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV          4   73
  3P LOSS WILD-TYPE   16  296
     clus
vv    3P LOSS CNV 3P LOSS WILD-TYPE
  NO            4                16
  YES          73               296
D45V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P LOSS CNV                                                14
  3P LOSS WILD-TYPE                                          86
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P LOSS CNV                                           14             20
  3P LOSS WILD-TYPE                                     63             42
                   vv
clus                LIFELONG NON-SMOKER
  3P LOSS CNV                         5
  3P LOSS WILD-TYPE                  31
D45V12, multiclass
                                             clus
vv                                            3P LOSS CNV 3P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          14                86
  CURRENT REFORMED SMOKER FOR > 15 YEARS               14                63
  CURRENT SMOKER                                       20                42
  LIFELONG NON-SMOKER                                   5                31
D45V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS CNV        50   1   0   2
  3P LOSS WILD-TYPE 183   8   4  12
D45V14, multiclass
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  R0          50               183
  R1           1                 8
  R2           0                 4
  RX           2                12

Clustering(46) Variable = 3q loss
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS CNV        30  12
  3Q LOSS WILD-TYPE 234  73
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               42               307 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               12                73 
$`3Q LOSS CNV`
TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-44-6144 TCGA-44-6776 TCGA-44-8117 
        2.96        25.02         2.04         0.30        63.72         8.52 
TCGA-44-8119 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-6591 TCGA-50-6594 
        3.22        35.87        21.47         8.45         3.88        12.16 
TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 
        3.88         1.12         1.32         0.13         6.97         1.58 
TCGA-55-A492 TCGA-62-A46P TCGA-62-A470 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 
        0.03        19.53        39.22        39.09        83.84        16.67 
TCGA-67-3770 TCGA-67-3772 TCGA-69-8253 TCGA-73-4662 TCGA-78-7148 TCGA-78-7167 
        0.99         0.59         3.25        29.95        20.58        88.11 
TCGA-78-7535 TCGA-78-7539 TCGA-86-7713 TCGA-86-8054 TCGA-86-8073 TCGA-91-6847 
       31.20        10.75         0.23         0.62         0.43        26.93 
TCGA-91-7771 TCGA-95-7039 TCGA-95-7948 TCGA-97-8172 TCGA-J2-8194 TCGA-L4-A4E5 
        1.02         1.12         4.34         5.95         3.72         6.97 

$`3Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       13.74         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 
       49.28         8.05         9.27         8.78        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       11.05         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       38.47         0.59         0.13         3.12         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         1.58         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       68.81        47.77        17.75        56.81        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38         0.10        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        19.27        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 
        0.36         0.89         1.12         0.46         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        1.41         0.85         0.76         0.69         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 
        1.28         1.15         0.36         4.18         0.92         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         0.07         5.36         0.69         1.32 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         3.48         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         9.27         7.82         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      3Q LOSS CNV 3Q LOSS WILD-TYPE 
             0.03              0.03 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
            88.11            223.96 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
            5.145             8.220 
[1] "0.0 - 88.1 (5.1)"  "0.0 - 224.0 (8.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV         24   23
  3Q LOSS WILD-TYPE  187  155
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  FEMALE          24               187
  MALE            23               155
D46V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q LOSS CNV                                4
  3Q LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q LOSS CNV                                      11
  3Q LOSS WILD-TYPE                                68
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS CNV                                                       27
  3Q LOSS WILD-TYPE                                                216
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q LOSS CNV                                                0
  3Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q LOSS CNV                                                   3
  3Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q LOSS CNV                                    0
  3Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q LOSS CNV                                        0
  3Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q LOSS CNV                                  0                             1
  3Q LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q LOSS CNV                                                   0
  3Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3Q LOSS CNV                                       1
  3Q LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3Q LOSS CNV                                  0
  3Q LOSS WILD-TYPE                            3
D46V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS CNV         6  20   4   1
  3Q LOSS WILD-TYPE  74 149  18  15
D46V6, multiclass
    clus
vv   3Q LOSS CNV 3Q LOSS WILD-TYPE
  T1           6                74
  T2          20               149
  T3           4                18
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  3Q LOSS CNV        21   5     5
  3Q LOSS WILD-TYPE 151  53    47
D46V7, multiclass
       clus
vv      3Q LOSS CNV 3Q LOSS WILD-TYPE
  N0             21               151
  N1              5                53
  N2+N3           5                47
                   vv
clus                 M0  M1  MX
  3Q LOSS CNV        24   2   4
  3Q LOSS WILD-TYPE 178  14  59
D46V8, multiclass
    clus
vv   3Q LOSS CNV 3Q LOSS WILD-TYPE
  M0          24               178
  M1           2                14
  MX           4                59
                   vv
clus                  I  II III  IV
  3Q LOSS CNV        14  10   4   2
  3Q LOSS WILD-TYPE 135  51  53  14
D46V9, multiclass
     clus
vv    3Q LOSS CNV 3Q LOSS WILD-TYPE
  I            14               135
  II           10                51
  III           4                53
  IV            2                14
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          2   45
  3Q LOSS WILD-TYPE   18  324
     clus
vv    3Q LOSS CNV 3Q LOSS WILD-TYPE
  NO            2                18
  YES          45               324
D46V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q LOSS CNV                                                 7
  3Q LOSS WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q LOSS CNV                                            7              9
  3Q LOSS WILD-TYPE                                     70             53
                   vv
clus                LIFELONG NON-SMOKER
  3Q LOSS CNV                         5
  3Q LOSS WILD-TYPE                  31
D46V12, multiclass
                                             clus
vv                                            3Q LOSS CNV 3Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           7                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                7                70
  CURRENT SMOKER                                        9                53
  LIFELONG NON-SMOKER                                   5                31
D46V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS CNV        29   0   0   1
  3Q LOSS WILD-TYPE 204   9   4  13
D46V14, multiclass
    clus
vv   3Q LOSS CNV 3Q LOSS WILD-TYPE
  R0          29               204
  R1           0                 9
  R2           0                 4
  RX           1                13

Clustering(47) Variable = 4p loss
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS CNV        28   5
  4P LOSS WILD-TYPE 236  80
      4P LOSS CNV 4P LOSS WILD-TYPE 
               33               316 
      4P LOSS CNV 4P LOSS WILD-TYPE 
                5                80 
$`4P LOSS CNV`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-38-4625 
       24.03        47.05        20.05        29.95         8.68        47.61 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6146 TCGA-44-7660 TCGA-44-8117 TCGA-50-5051 
        3.48        16.37         9.93         5.33         8.52        14.96 
TCGA-50-5936 TCGA-53-7626 TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-55-8514 
        8.45        31.89        45.17        42.48         6.48         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-69-7973 
        0.49         1.58        30.44        16.67         7.33         7.56 
TCGA-69-7979 TCGA-73-4659 TCGA-73-4670 TCGA-78-7536 TCGA-86-7713 TCGA-86-8358 
        2.93        23.38         0.46         8.02         0.23         0.62 
TCGA-91-6831 TCGA-95-7043 TCGA-L4-A4E5 
        1.28         0.07         6.97 

$`4P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
        4.60         6.84         0.30         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        9.80         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       17.59        13.74         3.22         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
        6.21        33.37         0.72         8.38        35.11        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 
        2.50         4.21         2.01        52.57        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       15.35         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        1.12         0.46         0.62         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 
        1.41         0.85         0.76         0.69         0.53         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        0.99         1.28         1.22        41.33         0.03         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      4P LOSS CNV 4P LOSS WILD-TYPE 
             0.07              0.03 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            47.61            223.96 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            8.450             8.035 
[1] "0.1 - 47.6 (8.4)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV         17   18
  4P LOSS WILD-TYPE  194  160
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  FEMALE          17               194
  MALE            18               160
D47V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P LOSS CNV                                2
  4P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P LOSS CNV                                       7
  4P LOSS WILD-TYPE                                72
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS CNV                                                       23
  4P LOSS WILD-TYPE                                                220
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P LOSS CNV                                                0
  4P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P LOSS CNV                                                   1
  4P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P LOSS CNV                                    0
  4P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P LOSS CNV                                        0
  4P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P LOSS CNV                                  1                             0
  4P LOSS WILD-TYPE                            1                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P LOSS CNV                                                   0
  4P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4P LOSS CNV                                       1
  4P LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4P LOSS CNV                                  0
  4P LOSS WILD-TYPE                            3
D47V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS CNV         4  20   1   1
  4P LOSS WILD-TYPE  76 149  21  15
D47V6, multiclass
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  T1           4                76
  T2          20               149
  T3           1                21
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  4P LOSS CNV        14   4     8
  4P LOSS WILD-TYPE 158  54    44
D47V7, multiclass
       clus
vv      4P LOSS CNV 4P LOSS WILD-TYPE
  N0             14               158
  N1              4                54
  N2+N3           8                44
                   vv
clus                 M0  M1  MX
  4P LOSS CNV        19   2   4
  4P LOSS WILD-TYPE 183  14  59
D47V8, multiclass
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  M0          19               183
  M1           2                14
  MX           4                59
                   vv
clus                  I  II III  IV
  4P LOSS CNV        11   6   8   1
  4P LOSS WILD-TYPE 138  55  49  15
D47V9, multiclass
     clus
vv    4P LOSS CNV 4P LOSS WILD-TYPE
  I            11               138
  II            6                55
  III           8                49
  IV            1                15
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV          3   32
  4P LOSS WILD-TYPE   17  337
     clus
vv    4P LOSS CNV 4P LOSS WILD-TYPE
  NO            3                17
  YES          32               337
D47V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P LOSS CNV                                                 9
  4P LOSS WILD-TYPE                                          91
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P LOSS CNV                                            5             10
  4P LOSS WILD-TYPE                                     72             52
                   vv
clus                LIFELONG NON-SMOKER
  4P LOSS CNV                         1
  4P LOSS WILD-TYPE                  35
D47V12, multiclass
                                             clus
vv                                            4P LOSS CNV 4P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           9                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                5                72
  CURRENT SMOKER                                       10                52
  LIFELONG NON-SMOKER                                   1                35
D47V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS CNV        22   0   0   0
  4P LOSS WILD-TYPE 211   9   4  14
D47V14, multiclass
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  R0          22               211
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(48) Variable = 4q loss
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS CNV        30   9
  4Q LOSS WILD-TYPE 234  76
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               39               310 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
                9                76 
$`4Q LOSS CNV`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-44-5643 TCGA-44-5644 
       47.05        20.05        29.95         8.68         3.48        16.37 
TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 
        5.33        14.96         8.45         8.38        23.05        38.73 
TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 
       45.17        42.48         6.48         0.13         6.97         1.58 
TCGA-55-A492 TCGA-62-A46O TCGA-64-5778 TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 
        0.03        47.77        30.44        16.67        13.61         7.56 
TCGA-69-7979 TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-78-7167 
        2.93         4.21        23.38        29.95         0.46        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-86-7713 TCGA-86-8669 TCGA-91-6829 TCGA-91-6831 
       31.20         8.02         0.23         1.08        41.33         1.28 
TCGA-91-6847 TCGA-95-7043 TCGA-L4-A4E5 
       26.93         0.07         6.97 

$`4Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03         8.02         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 
        0.72        35.11        31.89        13.74        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         1.58         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       68.81        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       22.68         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
        2.50         2.01        52.57        20.28        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.53         0.62         0.85         1.12         1.45         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 
        0.49         0.33         0.99         1.28         1.22         0.03 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15         0.36         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             0.03              0.03 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            88.11            223.96 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             8.68              7.79 
[1] "0.0 - 88.1 (8.7)"  "0.0 - 224.0 (7.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"4Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV         18   24
  4Q LOSS WILD-TYPE  193  154
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  FEMALE          18               193
  MALE            24               154
D48V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q LOSS CNV                                2
  4Q LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q LOSS CNV                                       7
  4Q LOSS WILD-TYPE                                72
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS CNV                                                       28
  4Q LOSS WILD-TYPE                                                215
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q LOSS CNV                                                0
  4Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q LOSS CNV                                                   2
  4Q LOSS WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q LOSS CNV                                    0
  4Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q LOSS CNV                                        0
  4Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q LOSS CNV                                  0                             1
  4Q LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q LOSS CNV                                                   1
  4Q LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4Q LOSS CNV                                       1
  4Q LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4Q LOSS CNV                                  0
  4Q LOSS WILD-TYPE                            3
D48V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS CNV         6  23   0   2
  4Q LOSS WILD-TYPE  74 146  22  14
D48V6, multiclass
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  T1           6                74
  T2          23               146
  T3           0                22
  T4           2                14
                   vv
clus                 N0  N1 N2+N3
  4Q LOSS CNV        20   1    10
  4Q LOSS WILD-TYPE 152  57    42
D48V7, multiclass
       clus
vv      4Q LOSS CNV 4Q LOSS WILD-TYPE
  N0             20               152
  N1              1                57
  N2+N3          10                42
                   vv
clus                 M0  M1  MX
  4Q LOSS CNV        20   3   7
  4Q LOSS WILD-TYPE 182  13  56
D48V8, multiclass
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  M0          20               182
  M1           3                13
  MX           7                56
                   vv
clus                  I  II III  IV
  4Q LOSS CNV        17   2  10   2
  4Q LOSS WILD-TYPE 132  59  47  14
D48V9, multiclass
     clus
vv    4Q LOSS CNV 4Q LOSS WILD-TYPE
  I            17               132
  II            2                59
  III          10                47
  IV            2                14
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV          4   38
  4Q LOSS WILD-TYPE   16  331
     clus
vv    4Q LOSS CNV 4Q LOSS WILD-TYPE
  NO            4                16
  YES          38               331
D48V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q LOSS CNV                                                10
  4Q LOSS WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q LOSS CNV                                            6             12
  4Q LOSS WILD-TYPE                                     71             50
                   vv
clus                LIFELONG NON-SMOKER
  4Q LOSS CNV                         2
  4Q LOSS WILD-TYPE                  34
D48V12, multiclass
                                             clus
vv                                            4Q LOSS CNV 4Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          10                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                6                71
  CURRENT SMOKER                                       12                50
  LIFELONG NON-SMOKER                                   2                34
D48V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS CNV        26   0   0   0
  4Q LOSS WILD-TYPE 207   9   4  14
D48V14, multiclass
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  R0          26               207
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(49) Variable = 5p loss
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS CNV         7   3
  5P LOSS WILD-TYPE 257  82
      5P LOSS CNV 5P LOSS WILD-TYPE 
               10               339 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                3                82 
$`5P LOSS CNV`
TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-64-5779 TCGA-69-7979 TCGA-78-7161 
       45.17        42.48         3.88        16.67         2.93         7.04 
TCGA-78-7167 TCGA-86-8074 TCGA-95-7043 TCGA-95-7567 
       88.11         0.79         0.07         5.36 

$`5P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
       31.89        13.74        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       48.49         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 
       22.29       104.15       223.96         8.48        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       13.81         0.36         0.89         0.23         1.12         0.46 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.43         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        6.08         1.12         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      5P LOSS CNV 5P LOSS WILD-TYPE 
             0.07              0.03 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            88.11            223.96 
      5P LOSS CNV 5P LOSS WILD-TYPE 
             6.20              8.09 
[1] "0.1 - 88.1 (6.2)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          4    8
  5P LOSS WILD-TYPE  207  170
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  FEMALE           4               207
  MALE             8               170
D49V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P LOSS CNV                                2
  5P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P LOSS CNV                                       5
  5P LOSS WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS CNV                                                        3
  5P LOSS WILD-TYPE                                                240
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P LOSS CNV                                                0
  5P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P LOSS CNV                                                   0
  5P LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P LOSS CNV                                    0
  5P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P LOSS CNV                                        0
  5P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P LOSS CNV                                  0                             2
  5P LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P LOSS CNV                                                   0
  5P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5P LOSS CNV                                       0
  5P LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5P LOSS CNV                                  0
  5P LOSS WILD-TYPE                            3
D49V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS CNV         3   6   1   0
  5P LOSS WILD-TYPE  77 163  21  16
D49V6, multiclass
    clus
vv   5P LOSS CNV 5P LOSS WILD-TYPE
  T1           3                77
  T2           6               163
  T3           1                21
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  5P LOSS CNV         6   3     1
  5P LOSS WILD-TYPE 166  55    51
D49V7, multiclass
       clus
vv      5P LOSS CNV 5P LOSS WILD-TYPE
  N0              6               166
  N1              3                55
  N2+N3           1                51
                   vv
clus                 M0  M1  MX
  5P LOSS CNV         7   2   1
  5P LOSS WILD-TYPE 195  14  62
D49V8, multiclass
    clus
vv   5P LOSS CNV 5P LOSS WILD-TYPE
  M0           7               195
  M1           2                14
  MX           1                62
                   vv
clus                  I  II III  IV
  5P LOSS CNV         5   3   1   1
  5P LOSS WILD-TYPE 144  58  56  15
D49V9, multiclass
     clus
vv    5P LOSS CNV 5P LOSS WILD-TYPE
  I             5               144
  II            3                58
  III           1                56
  IV            1                15
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          0   12
  5P LOSS WILD-TYPE   20  357
     clus
vv    5P LOSS CNV 5P LOSS WILD-TYPE
  NO            0                20
  YES          12               357
D49V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P LOSS CNV                                                 4
  5P LOSS WILD-TYPE                                          96
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P LOSS CNV                                            2              4
  5P LOSS WILD-TYPE                                     75             58
                   vv
clus                LIFELONG NON-SMOKER
  5P LOSS CNV                         0
  5P LOSS WILD-TYPE                  36
D49V12, multiclass
                                             clus
vv                                            5P LOSS CNV 5P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4                96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2                75
  CURRENT SMOKER                                        4                58
  LIFELONG NON-SMOKER                                   0                36
D49V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS CNV         6   1   0   0
  5P LOSS WILD-TYPE 227   8   4  14
D49V14, multiclass
    clus
vv   5P LOSS CNV 5P LOSS WILD-TYPE
  R0           6               227
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(50) Variable = 5q loss
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS CNV        34  10
  5Q LOSS WILD-TYPE 230  75
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               44               305 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               10                75 
$`5Q LOSS CNV`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-05-5715 TCGA-38-4630 TCGA-44-5643 
        9.96        20.05        26.01         2.04        35.28         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 TCGA-44-7660 TCGA-44-7670 TCGA-49-4505 
       16.37         0.30         9.93         5.33        17.46        14.07 
TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       35.11        23.05        38.73        45.17         2.86        42.48 
TCGA-55-6975 TCGA-55-7281 TCGA-55-8094 TCGA-55-8616 TCGA-62-A46O TCGA-62-A470 
        3.88         0.59         0.13         1.58        47.77        39.22 
TCGA-64-1676 TCGA-64-5778 TCGA-64-5779 TCGA-69-7765 TCGA-69-7979 TCGA-73-4668 
       56.81        30.44        16.67         4.24         2.93        15.35 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7161 TCGA-78-7167 TCGA-86-7953 TCGA-86-7955 
       35.93        21.86         7.04        88.11         1.12         0.46 
TCGA-86-8073 TCGA-86-8074 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 
        0.43         0.79         1.12         0.07         5.36         4.34 
TCGA-97-7937 TCGA-J2-A4AD 
        5.95         9.44 

$`5Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
        6.21         4.60         6.84         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        9.80         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       13.74         8.52         3.22         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       13.74        48.62         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.85         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 
        0.92         0.16         5.29        68.81        19.53        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        6.12        22.68        13.61         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       19.27        20.58        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.23         0.62         0.33         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        6.08         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       43.76         8.65         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG 
        1.45         5.56         5.03         3.72         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      5Q LOSS CNV 5Q LOSS WILD-TYPE 
             0.07              0.03 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
            88.11            223.96 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
            9.685             8.020 
[1] "0.1 - 88.1 (9.7)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
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      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"5Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         21   29
  5Q LOSS WILD-TYPE  190  149
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  FEMALE          21               190
  MALE            29               149
D50V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q LOSS CNV                                3
  5Q LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q LOSS CNV                                      14
  5Q LOSS WILD-TYPE                                65
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS CNV                                                       24
  5Q LOSS WILD-TYPE                                                219
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q LOSS CNV                                                0
  5Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q LOSS CNV                                                   3
  5Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q LOSS CNV                                    0
  5Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q LOSS CNV                                        2
  5Q LOSS WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q LOSS CNV                                  1                             3
  5Q LOSS WILD-TYPE                            1                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q LOSS CNV                                                   0
  5Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5Q LOSS CNV                                       0
  5Q LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5Q LOSS CNV                                  0
  5Q LOSS WILD-TYPE                            3
D50V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS CNV        10  23   3   3
  5Q LOSS WILD-TYPE  70 146  19  13
D50V6, multiclass
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  T1          10                70
  T2          23               146
  T3           3                19
  T4           3                13
                   vv
clus                 N0  N1 N2+N3
  5Q LOSS CNV        24  12     3
  5Q LOSS WILD-TYPE 148  46    49
D50V7, multiclass
       clus
vv      5Q LOSS CNV 5Q LOSS WILD-TYPE
  N0             24               148
  N1             12                46
  N2+N3           3                49
                   vv
clus                 M0  M1  MX
  5Q LOSS CNV        27   3   6
  5Q LOSS WILD-TYPE 175  13  57
D50V8, multiclass
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  M0          27               175
  M1           3                13
  MX           6                57
                   vv
clus                  I  II III  IV
  5Q LOSS CNV        18  12   5   3
  5Q LOSS WILD-TYPE 131  49  52  13
D50V9, multiclass
     clus
vv    5Q LOSS CNV 5Q LOSS WILD-TYPE
  I            18               131
  II           12                49
  III           5                52
  IV            3                13
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV          1   49
  5Q LOSS WILD-TYPE   19  320
     clus
vv    5Q LOSS CNV 5Q LOSS WILD-TYPE
  NO            1                19
  YES          49               320
D50V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q LOSS CNV                                                13
  5Q LOSS WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q LOSS CNV                                            8             15
  5Q LOSS WILD-TYPE                                     69             47
                   vv
clus                LIFELONG NON-SMOKER
  5Q LOSS CNV                         3
  5Q LOSS WILD-TYPE                  33
D50V12, multiclass
                                             clus
vv                                            5Q LOSS CNV 5Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          13                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                8                69
  CURRENT SMOKER                                       15                47
  LIFELONG NON-SMOKER                                   3                33
D50V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS CNV        29   2   0   4
  5Q LOSS WILD-TYPE 204   7   4  10
D50V14, multiclass
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  R0          29               204
  R1           2                 7
  R2           0                 4
  RX           4                10

Clustering(51) Variable = 6p loss
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS CNV        21   9
  6P LOSS WILD-TYPE 243  76
      6P LOSS CNV 6P LOSS WILD-TYPE 
               30               319 
      6P LOSS CNV 6P LOSS WILD-TYPE 
                9                76 
$`6P LOSS CNV`
TCGA-05-4390 TCGA-35-4123 TCGA-49-4505 TCGA-50-5051 TCGA-50-5932 TCGA-55-6968 
       37.02         5.95        14.07        14.96        35.87        42.48 
TCGA-55-6972 TCGA-55-7576 TCGA-55-8616 TCGA-62-A472 TCGA-64-1676 TCGA-67-3771 
       48.49         1.32         1.58        17.75        56.81         1.97 
TCGA-69-7760 TCGA-69-7974 TCGA-69-8253 TCGA-73-4675 TCGA-78-7146 TCGA-78-7152 
        5.06         6.05         3.25         1.32         5.65        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7535 TCGA-78-7536 TCGA-86-7953 
       24.99        19.50        32.09        31.20         8.02         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-95-7043 TCGA-95-7948 TCGA-97-7547 TCGA-97-8174 
        0.46         0.62         0.07         4.34        47.18         5.36 

$`6P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       45.17         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 
        0.30         0.10         4.80         6.97         0.49         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       19.53        39.22        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        7.56         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 
       27.16        19.27        20.58        35.93        21.86        38.50 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
        8.48        88.11        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        6.08         1.12         5.36         0.69         1.32        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        3.48         5.95         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      6P LOSS CNV 6P LOSS WILD-TYPE 
             0.07              0.03 
      6P LOSS CNV 6P LOSS WILD-TYPE 
            56.81            223.96 
      6P LOSS CNV 6P LOSS WILD-TYPE 
            7.035             8.090 
[1] "0.1 - 56.8 (7.0)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV         13   19
  6P LOSS WILD-TYPE  198  159
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  FEMALE          13               198
  MALE            19               159
D51V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P LOSS CNV                                2
  6P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P LOSS CNV                                      10
  6P LOSS WILD-TYPE                                69
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS CNV                                                       16
  6P LOSS WILD-TYPE                                                227
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P LOSS CNV                                                0
  6P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P LOSS CNV                                                   1
  6P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P LOSS CNV                                    0
  6P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P LOSS CNV                                        0
  6P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P LOSS CNV                                  0                             3
  6P LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P LOSS CNV                                                   0
  6P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6P LOSS CNV                                       0
  6P LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6P LOSS CNV                                  0
  6P LOSS WILD-TYPE                            3
D51V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS CNV         5  13   3   2
  6P LOSS WILD-TYPE  75 156  19  14
D51V6, multiclass
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  T1           5                75
  T2          13               156
  T3           3                19
  T4           2                14
                   vv
clus                 N0  N1 N2+N3
  6P LOSS CNV        13   4     6
  6P LOSS WILD-TYPE 159  54    46
D51V7, multiclass
       clus
vv      6P LOSS CNV 6P LOSS WILD-TYPE
  N0             13               159
  N1              4                54
  N2+N3           6                46
                   vv
clus                 M0  M1  MX
  6P LOSS CNV        19   2   2
  6P LOSS WILD-TYPE 183  14  61
D51V8, multiclass
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  M0          19               183
  M1           2                14
  MX           2                61
                   vv
clus                  I  II III  IV
  6P LOSS CNV        11   4   7   1
  6P LOSS WILD-TYPE 138  57  50  15
D51V9, multiclass
     clus
vv    6P LOSS CNV 6P LOSS WILD-TYPE
  I            11               138
  II            4                57
  III           7                50
  IV            1                15
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          3   29
  6P LOSS WILD-TYPE   17  340
     clus
vv    6P LOSS CNV 6P LOSS WILD-TYPE
  NO            3                17
  YES          29               340
D51V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P LOSS CNV                                                11
  6P LOSS WILD-TYPE                                          89
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P LOSS CNV                                            4              5
  6P LOSS WILD-TYPE                                     73             57
                   vv
clus                LIFELONG NON-SMOKER
  6P LOSS CNV                         2
  6P LOSS WILD-TYPE                  34
D51V12, multiclass
                                             clus
vv                                            6P LOSS CNV 6P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          11                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4                73
  CURRENT SMOKER                                        5                57
  LIFELONG NON-SMOKER                                   2                34
D51V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS CNV        19   0   0   3
  6P LOSS WILD-TYPE 214   9   4  11
D51V14, multiclass
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  R0          19               214
  R1           0                 9
  R2           0                 4
  RX           3                11

Clustering(52) Variable = 6q loss
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS CNV        56  18
  6Q LOSS WILD-TYPE 208  67
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               74               275 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               18                67 
$`6Q LOSS CNV`
TCGA-05-4390 TCGA-05-5429 TCGA-35-4123 TCGA-44-2659 TCGA-44-2666 TCGA-44-5644 
       37.02         0.99         5.95        17.39         3.19        16.37 
TCGA-44-6779 TCGA-44-7659 TCGA-44-8117 TCGA-44-A47F TCGA-49-4488 TCGA-49-4494 
       16.41         9.80         8.52         8.09        28.57        35.54 
TCGA-49-4505 TCGA-49-4514 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 
       14.07        43.20        14.96        35.87        21.47         4.44 
TCGA-50-6594 TCGA-55-6543 TCGA-55-6968 TCGA-55-6972 TCGA-55-7283 TCGA-55-7576 
       12.16         0.07        42.48        48.49         1.12         1.32 
TCGA-55-7725 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-8094 TCGA-55-8512 
        1.28         0.62         0.69         0.10         0.13         0.10 
TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Y TCGA-55-A494 TCGA-62-A472 TCGA-64-1676 
        0.49         1.58         1.02         0.16        17.75        56.81 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 TCGA-67-6216 TCGA-69-7760 
       39.09        83.84        16.67         1.97         0.69         5.06 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 TCGA-69-8253 TCGA-73-4666 TCGA-73-4675 
        7.56         6.05         2.93         3.25        20.28         1.32 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
        5.65        35.93        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
        5.88        31.20         8.02        53.33        28.96        32.68 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-91-6831 TCGA-95-7043 
        0.23         1.12         0.46         0.62         1.28         0.07 
TCGA-95-7948 TCGA-97-7547 TCGA-97-7554 TCGA-97-7938 TCGA-97-8174 TCGA-J2-8194 
        4.34        47.18         8.65         0.59         5.36         3.72 
TCGA-L4-A4E5 TCGA-L9-A443 
        6.97         3.81 

$`6Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       32.45        36.49         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.87        17.46        17.59        13.74         3.22         8.38 
TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        6.64         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       12.66        46.72        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        77.88         8.45        15.12         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       24.99        40.54        71.05        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 
        3.12         1.02         1.02         0.79         1.78         0.53 
TCGA-55-7910 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        6.48         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 
        7.07         1.41         7.46         0.30         4.80         6.97 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Z TCGA-55-A490 
        1.61         2.14         3.45         1.08         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.03         0.92         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       39.22        20.65        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       30.44        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7978 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        4.24         2.30        12.56         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       52.57        23.38        29.95        15.35         0.46         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.25        20.42        17.06       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       20.58        21.86        38.50        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7539 
      104.15       223.96         8.48        88.11        26.53        10.75 
TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-8055 TCGA-86-8073 
       10.55        13.81         0.36         0.89         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        0.69         1.32        31.66        48.53        43.76         5.95 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         3.48         5.95         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD 
       14.04        15.06         1.45         5.56         5.03         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        9.27         7.82         2.50         0.20        20.42 

      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             0.07              0.03 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
            83.84            223.96 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             6.51              8.32 
[1] "0.1 - 83.8 (6.5)"  "0.0 - 224.0 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV         44   42
  6Q LOSS WILD-TYPE  167  136
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  FEMALE          44               167
  MALE            42               136
D52V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q LOSS CNV                                4
  6Q LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q LOSS CNV                                      19
  6Q LOSS WILD-TYPE                                60
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS CNV                                                       51
  6Q LOSS WILD-TYPE                                                192
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q LOSS CNV                                                2
  6Q LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q LOSS CNV                                                   4
  6Q LOSS WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q LOSS CNV                                    0
  6Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q LOSS CNV                                        0
  6Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q LOSS CNV                                  0                             6
  6Q LOSS WILD-TYPE                            2                            12
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q LOSS CNV                                                   0
  6Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6Q LOSS CNV                                       0
  6Q LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6Q LOSS CNV                                  0
  6Q LOSS WILD-TYPE                            3
D52V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS CNV        20  31   8   4
  6Q LOSS WILD-TYPE  60 138  14  12
D52V6, multiclass
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  T1          20                60
  T2          31               138
  T3           8                14
  T4           4                12
                   vv
clus                 N0  N1 N2+N3
  6Q LOSS CNV        39   9    15
  6Q LOSS WILD-TYPE 133  49    37
D52V7, multiclass
       clus
vv      6Q LOSS CNV 6Q LOSS WILD-TYPE
  N0             39               133
  N1              9                49
  N2+N3          15                37
                   vv
clus                 M0  M1  MX
  6Q LOSS CNV        45   4  11
  6Q LOSS WILD-TYPE 157  12  52
D52V8, multiclass
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  M0          45               157
  M1           4                12
  MX          11                52
                   vv
clus                  I  II III  IV
  6Q LOSS CNV        31  10  16   3
  6Q LOSS WILD-TYPE 118  51  41  13
D52V9, multiclass
     clus
vv    6Q LOSS CNV 6Q LOSS WILD-TYPE
  I            31               118
  II           10                51
  III          16                41
  IV            3                13
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          6   80
  6Q LOSS WILD-TYPE   14  289
     clus
vv    6Q LOSS CNV 6Q LOSS WILD-TYPE
  NO            6                14
  YES          80               289
D52V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q LOSS CNV                                                22
  6Q LOSS WILD-TYPE                                          78
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q LOSS CNV                                           18             15
  6Q LOSS WILD-TYPE                                     59             47
                   vv
clus                LIFELONG NON-SMOKER
  6Q LOSS CNV                         6
  6Q LOSS WILD-TYPE                  30
D52V12, multiclass
                                             clus
vv                                            6Q LOSS CNV 6Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          22                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS               18                59
  CURRENT SMOKER                                       15                47
  LIFELONG NON-SMOKER                                   6                30
D52V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS CNV        52   2   0   4
  6Q LOSS WILD-TYPE 181   7   4  10
D52V14, multiclass
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  R0          52               181
  R1           2                 7
  R2           0                 4
  RX           4                10

Clustering(53) Variable = 7p loss
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS CNV         6   3
  7P LOSS WILD-TYPE 258  82
      7P LOSS CNV 7P LOSS WILD-TYPE 
                9               340 
      7P LOSS CNV 7P LOSS WILD-TYPE 
                3                82 
$`7P LOSS CNV`
TCGA-38-4630 TCGA-44-5643 TCGA-50-5931 TCGA-55-1594 TCGA-67-3770 TCGA-67-3774 
       35.28         3.48         8.78        38.73         0.99         0.59 
TCGA-69-7763 TCGA-78-7167 TCGA-86-8278 
       22.68        88.11         0.76 

$`7P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       39.52         7.33         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         5.06         6.12        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.33         0.43         0.79         1.41         0.85         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      7P LOSS CNV 7P LOSS WILD-TYPE 
             0.59              0.03 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            88.11            223.96 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            8.780             8.035 
[1] "0.6 - 88.1 (8.8)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          6    5
  7P LOSS WILD-TYPE  205  173
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  FEMALE           6               205
  MALE             5               173
D53V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P LOSS CNV                                0
  7P LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P LOSS CNV                                       1
  7P LOSS WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS CNV                                                        7
  7P LOSS WILD-TYPE                                                236
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P LOSS CNV                                                0
  7P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P LOSS CNV                                                   0
  7P LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P LOSS CNV                                    0
  7P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P LOSS CNV                                        0
  7P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P LOSS CNV                                  0                             2
  7P LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P LOSS CNV                                                   0
  7P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7P LOSS CNV                                       0
  7P LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7P LOSS CNV                                  1
  7P LOSS WILD-TYPE                            2
D53V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS CNV         3   7   0   0
  7P LOSS WILD-TYPE  77 162  22  16
D53V6, multiclass
    clus
vv   7P LOSS CNV 7P LOSS WILD-TYPE
  T1           3                77
  T2           7               162
  T3           0                22
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  7P LOSS CNV         8   0     2
  7P LOSS WILD-TYPE 164  58    50
D53V7, multiclass
       clus
vv      7P LOSS CNV 7P LOSS WILD-TYPE
  N0              8               164
  N1              0                58
  N2+N3           2                50
                   vv
clus                 M0  M1  MX
  7P LOSS CNV         7   1   1
  7P LOSS WILD-TYPE 195  15  62
D53V8, multiclass
    clus
vv   7P LOSS CNV 7P LOSS WILD-TYPE
  M0           7               195
  M1           1                15
  MX           1                62
                   vv
clus                  I  II III  IV
  7P LOSS CNV         7   0   2   1
  7P LOSS WILD-TYPE 142  61  55  15
D53V9, multiclass
     clus
vv    7P LOSS CNV 7P LOSS WILD-TYPE
  I             7               142
  II            0                61
  III           2                55
  IV            1                15
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          1   10
  7P LOSS WILD-TYPE   19  359
     clus
vv    7P LOSS CNV 7P LOSS WILD-TYPE
  NO            1                19
  YES          10               359
D53V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P LOSS CNV                                                 1
  7P LOSS WILD-TYPE                                          99
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P LOSS CNV                                            4              3
  7P LOSS WILD-TYPE                                     73             59
                   vv
clus                LIFELONG NON-SMOKER
  7P LOSS CNV                         1
  7P LOSS WILD-TYPE                  35
D53V12, multiclass
                                             clus
vv                                            7P LOSS CNV 7P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           1                99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4                73
  CURRENT SMOKER                                        3                59
  LIFELONG NON-SMOKER                                   1                35
D53V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS CNV         5   1   0   0
  7P LOSS WILD-TYPE 228   8   4  14
D53V14, multiclass
    clus
vv   7P LOSS CNV 7P LOSS WILD-TYPE
  R0           5               228
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(54) Variable = 7q loss
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS CNV         7   3
  7Q LOSS WILD-TYPE 257  82
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               10               339 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                3                82 
$`7Q LOSS CNV`
TCGA-38-4630 TCGA-44-5643 TCGA-49-6742 TCGA-50-5931 TCGA-50-6673 TCGA-55-1594 
       35.28         3.48        15.02         8.78         0.72        38.73 
TCGA-55-1595 TCGA-67-3770 TCGA-67-3774 TCGA-86-8278 
       48.62         0.99         0.59         0.76 

$`7Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 
       25.51        11.05        12.16         6.21        33.37         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
       35.11        31.89        13.74        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
        0.10        30.44        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
        0.89         0.23         1.12         0.46         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 
        0.43         0.79         1.41         0.85         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      7Q LOSS CNV 7Q LOSS WILD-TYPE 
             0.59              0.03 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
            48.62            223.96 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
             6.13              8.05 
[1] "0.6 - 48.6 (6.1)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          8    4
  7Q LOSS WILD-TYPE  203  174
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  FEMALE           8               203
  MALE             4               174
D54V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q LOSS CNV                                0
  7Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q LOSS CNV                                       0
  7Q LOSS WILD-TYPE                                79
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS CNV                                                        8
  7Q LOSS WILD-TYPE                                                235
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q LOSS CNV                                                0
  7Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q LOSS CNV                                                   0
  7Q LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q LOSS CNV                                    1
  7Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q LOSS CNV                                        0
  7Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q LOSS CNV                                  0                             1
  7Q LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q LOSS CNV                                                   0
  7Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7Q LOSS CNV                                       1
  7Q LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7Q LOSS CNV                                  1
  7Q LOSS WILD-TYPE                            2
D54V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS CNV         4   7   0   0
  7Q LOSS WILD-TYPE  76 162  22  16
D54V6, multiclass
    clus
vv   7Q LOSS CNV 7Q LOSS WILD-TYPE
  T1           4                76
  T2           7               162
  T3           0                22
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  7Q LOSS CNV         8   1     2
  7Q LOSS WILD-TYPE 164  57    50
D54V7, multiclass
       clus
vv      7Q LOSS CNV 7Q LOSS WILD-TYPE
  N0              8               164
  N1              1                57
  N2+N3           2                50
                   vv
clus                 M0  M1  MX
  7Q LOSS CNV         8   0   2
  7Q LOSS WILD-TYPE 194  16  61
D54V8, multiclass
    clus
vv   7Q LOSS CNV 7Q LOSS WILD-TYPE
  M0           8               194
  M1           0                16
  MX           2                61
                   vv
clus                  I  II III  IV
  7Q LOSS CNV         8   1   2   0
  7Q LOSS WILD-TYPE 141  60  55  16
D54V9, multiclass
     clus
vv    7Q LOSS CNV 7Q LOSS WILD-TYPE
  I             8               141
  II            1                60
  III           2                55
  IV            0                16
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          1   11
  7Q LOSS WILD-TYPE   19  358
     clus
vv    7Q LOSS CNV 7Q LOSS WILD-TYPE
  NO            1                19
  YES          11               358
D54V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q LOSS CNV                                                 1
  7Q LOSS WILD-TYPE                                          99
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q LOSS CNV                                            5              2
  7Q LOSS WILD-TYPE                                     72             60
                   vv
clus                LIFELONG NON-SMOKER
  7Q LOSS CNV                         2
  7Q LOSS WILD-TYPE                  34
D54V12, multiclass
                                             clus
vv                                            7Q LOSS CNV 7Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           1                99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                5                72
  CURRENT SMOKER                                        2                60
  LIFELONG NON-SMOKER                                   2                34
D54V13, continuous
[1] "Remove cluster labels:" "7Q LOSS CNV"           
clus
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                2               204 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-44-A479        TCGA-44-A47A 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS        TCGA-44-A4SU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-53-7624 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-55-6712        TCGA-55-6971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7728        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-64-1677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7979        TCGA-69-8253        TCGA-69-8255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7025        TCGA-75-7027        TCGA-75-7031 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7711        TCGA-86-7714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-8054        TCGA-86-8055        TCGA-86-8056 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8073        TCGA-86-8074        TCGA-86-8281        TCGA-86-8358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8359        TCGA-86-8669        TCGA-86-8673        TCGA-86-8674 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A456        TCGA-86-A4D0        TCGA-91-6829        TCGA-91-6830 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-95-7944        TCGA-95-7947        TCGA-95-7948 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8171        TCGA-97-8172        TCGA-97-8174        TCGA-97-8179 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-7458        TCGA-99-8025        TCGA-99-8028        TCGA-99-8032 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS CNV         4   1   0   0
  7Q LOSS WILD-TYPE 229   8   4  14
D54V14, multiclass
    clus
vv   7Q LOSS CNV 7Q LOSS WILD-TYPE
  R0           4               229
  R1           1                 8
  R2           0                 4
  RX           0                14

Clustering(55) Variable = 8p loss
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS CNV        65  19
  8P LOSS WILD-TYPE 199  66
      8P LOSS CNV 8P LOSS WILD-TYPE 
               84               265 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               19                66 
$`8P LOSS CNV`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4433 TCGA-35-4123 TCGA-38-4631 TCGA-44-2662 
       29.95        26.01        24.00         5.95        11.64        15.78 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6774 
        6.44         6.21         3.48        16.37         0.30         5.42 
TCGA-44-7660 TCGA-44-7670 TCGA-44-8117 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
        5.33        17.46         8.52        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6761 TCGA-50-5049 TCGA-50-5931 TCGA-50-5932 
       14.07        29.46         0.03        48.82         8.78        35.87 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16        33.37         0.72        35.11        31.89 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6980 TCGA-55-7573 TCGA-55-7576 
       38.73        48.62         2.86         2.20         0.13         1.32 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7914 TCGA-55-8097 TCGA-55-8616 
        1.02         1.02         0.62         0.10         0.49         1.58 
TCGA-55-A490 TCGA-62-A46O TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
        1.58        47.77        56.81        39.09        55.40        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-69-7760 
        0.10        30.44         7.33         0.99         0.59         5.06 
TCGA-69-7979 TCGA-73-4662 TCGA-73-4668 TCGA-73-7498 TCGA-73-7499 TCGA-78-7150 
        2.93        29.95        15.35        20.42        17.06        21.86 
TCGA-78-7152 TCGA-78-7155 TCGA-78-7536 TCGA-78-7542 TCGA-86-7713 TCGA-86-8054 
       39.48        38.50         8.02        10.55         0.23         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8668 TCGA-91-6836 
        0.33         0.79         1.41         0.69         1.45         0.36 
TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 TCGA-97-7554 TCGA-97-7937 
       26.93         1.12         0.07         1.32         8.65         5.95 
TCGA-97-7938 TCGA-97-8171 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 
        0.59         3.48         1.45         3.72         9.27         6.97 

$`8P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 
        8.98        30.02        26.01        25.02        25.02        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       18.87        19.10        13.15        17.39         3.39        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 
        3.19         8.09        10.22         8.32         4.60         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.31        18.87        17.59        13.74         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       28.11        35.54        32.84         8.81        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 
       12.26        11.47        42.31         3.88        25.51         6.21 
TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
        8.38        13.74        23.05        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        3.88         5.46         7.76        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 
        3.12         1.28         0.79         1.78         0.53         6.48 
TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.69         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-1680 
       68.81        19.53        39.22        17.75        20.65        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       83.84        16.67        39.52         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        4.24         7.56         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        2.50         4.21         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        35.93        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        1.12         0.46         0.43         0.85         0.76         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.62         0.85         1.12         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 
        4.18         6.08         5.36         0.69         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       47.18        48.53        43.76         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8033 
        4.80         0.49         8.22        14.04        15.06         5.56 
TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        5.03         9.44         7.82         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      8P LOSS CNV 8P LOSS WILD-TYPE 
             0.03              0.03 
      8P LOSS CNV 8P LOSS WILD-TYPE 
            56.81            223.96 
      8P LOSS CNV 8P LOSS WILD-TYPE 
             7.15              8.09 
[1] "0.0 - 56.8 (7.2)"  "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         56   42
  8P LOSS WILD-TYPE  155  136
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  FEMALE          56               155
  MALE            42               136
D55V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P LOSS CNV                                3
  8P LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P LOSS CNV                                      16
  8P LOSS WILD-TYPE                                63
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS CNV                                                       65
  8P LOSS WILD-TYPE                                                178
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P LOSS CNV                                                1
  8P LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P LOSS CNV                                                   5
  8P LOSS WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P LOSS CNV                                    1
  8P LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P LOSS CNV                                        3
  8P LOSS WILD-TYPE                                  0
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P LOSS CNV                                  0                             3
  8P LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P LOSS CNV                                                   1
  8P LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8P LOSS CNV                                       0
  8P LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8P LOSS CNV                                  0
  8P LOSS WILD-TYPE                            3
D55V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS CNV        28  43   4   1
  8P LOSS WILD-TYPE  52 126  18  15
D55V6, multiclass
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  T1          28                52
  T2          43               126
  T3           4                18
  T4           1                15
                   vv
clus                 N0  N1 N2+N3
  8P LOSS CNV        49  13    14
  8P LOSS WILD-TYPE 123  45    38
D55V7, multiclass
       clus
vv      8P LOSS CNV 8P LOSS WILD-TYPE
  N0             49               123
  N1             13                45
  N2+N3          14                38
                   vv
clus                 M0  M1  MX
  8P LOSS CNV        57   3  15
  8P LOSS WILD-TYPE 145  13  48
D55V8, multiclass
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  M0          57               145
  M1           3                13
  MX          15                48
                   vv
clus                  I  II III  IV
  8P LOSS CNV        43  16  14   3
  8P LOSS WILD-TYPE 106  45  43  13
D55V9, multiclass
     clus
vv    8P LOSS CNV 8P LOSS WILD-TYPE
  I            43               106
  II           16                45
  III          14                43
  IV            3                13
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV          5   93
  8P LOSS WILD-TYPE   15  276
     clus
vv    8P LOSS CNV 8P LOSS WILD-TYPE
  NO            5                15
  YES          93               276
D55V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P LOSS CNV                                                19
  8P LOSS WILD-TYPE                                          81
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P LOSS CNV                                           20             24
  8P LOSS WILD-TYPE                                     57             38
                   vv
clus                LIFELONG NON-SMOKER
  8P LOSS CNV                        10
  8P LOSS WILD-TYPE                  26
D55V12, multiclass
                                             clus
vv                                            8P LOSS CNV 8P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          19                81
  CURRENT REFORMED SMOKER FOR > 15 YEARS               20                57
  CURRENT SMOKER                                       24                38
  LIFELONG NON-SMOKER                                  10                26
D55V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS CNV        63   1   0   3
  8P LOSS WILD-TYPE 170   8   4  11
D55V14, multiclass
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  R0          63               170
  R1           1                 8
  R2           0                 4
  RX           3                11

Clustering(56) Variable = 8q loss
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS CNV         9   0
  8Q LOSS WILD-TYPE 255  85
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                9               340 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                0                85 
$`8Q LOSS CNV`
TCGA-50-6597 TCGA-55-7573 TCGA-55-7727 TCGA-55-7903 TCGA-64-1679 TCGA-86-8055 
       33.37         0.13         1.02         0.62        55.40         0.33 
TCGA-86-8279 TCGA-95-7039 TCGA-97-8171 
        0.69         1.12         3.48 

$`8Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         0.59         1.12         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       39.22        17.75        56.81        20.65        39.09        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.46         0.62         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      8Q LOSS CNV 8Q LOSS WILD-TYPE 
             0.13              0.03 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            55.40            223.96 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            1.020             8.155 
[1] "0.1 - 55.4 (1.0)"  "0.0 - 224.0 (8.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"8Q LOSS WILD-TYPE" 
[1] "hr="     "9300000"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          5    7
  8Q LOSS WILD-TYPE  206  171
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  FEMALE           5               206
  MALE             7               171
D56V4, continuous
[1] "Remove cluster labels:" "8Q LOSS CNV"           
clus
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                1                28 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7955        TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q LOSS CNV                                0
  8Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q LOSS CNV                                       2
  8Q LOSS WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS CNV                                                        7
  8Q LOSS WILD-TYPE                                                236
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q LOSS CNV                                                0
  8Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q LOSS CNV                                                   0
  8Q LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q LOSS CNV                                    0
  8Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q LOSS CNV                                        1
  8Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q LOSS CNV                                  0                             1
  8Q LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q LOSS CNV                                                   1
  8Q LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8Q LOSS CNV                                       0
  8Q LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8Q LOSS CNV                                  0
  8Q LOSS WILD-TYPE                            3
D56V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS CNV         4   4   1   0
  8Q LOSS WILD-TYPE  76 165  21  16
D56V6, multiclass
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  T1           4                76
  T2           4               165
  T3           1                21
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  8Q LOSS CNV         6   1     2
  8Q LOSS WILD-TYPE 166  57    50
D56V7, multiclass
       clus
vv      8Q LOSS CNV 8Q LOSS WILD-TYPE
  N0              6               166
  N1              1                57
  N2+N3           2                50
                   vv
clus                 M0  M1  MX
  8Q LOSS CNV         5   0   4
  8Q LOSS WILD-TYPE 197  16  59
D56V8, multiclass
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  M0           5               197
  M1           0                16
  MX           4                59
                   vv
clus                  I  II III  IV
  8Q LOSS CNV         5   2   2   0
  8Q LOSS WILD-TYPE 144  59  55  16
D56V9, multiclass
     clus
vv    8Q LOSS CNV 8Q LOSS WILD-TYPE
  I             5               144
  II            2                59
  III           2                55
  IV            0                16
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          0   12
  8Q LOSS WILD-TYPE   20  357
     clus
vv    8Q LOSS CNV 8Q LOSS WILD-TYPE
  NO            0                20
  YES          12               357
D56V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q LOSS CNV                                                 2
  8Q LOSS WILD-TYPE                                          98
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q LOSS CNV                                            1              4
  8Q LOSS WILD-TYPE                                     76             58
                   vv
clus                LIFELONG NON-SMOKER
  8Q LOSS CNV                         2
  8Q LOSS WILD-TYPE                  34
D56V12, multiclass
                                             clus
vv                                            8Q LOSS CNV 8Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           2                98
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        4                58
  LIFELONG NON-SMOKER                                   2                34
D56V13, continuous
[1] "Remove cluster labels:" "8Q LOSS CNV"           
clus
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                2               204 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-44-A479        TCGA-44-A47A 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS        TCGA-44-A4SU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-53-7624 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6971        TCGA-55-7283        TCGA-55-7570 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-69-7761        TCGA-69-7763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7974        TCGA-69-7979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8255        TCGA-73-4659        TCGA-73-4662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-6214        TCGA-75-7025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-75-7027        TCGA-75-7031        TCGA-78-7145        TCGA-78-7146 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7542        TCGA-78-7633 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-83-5908        TCGA-86-6851 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7714        TCGA-86-7954        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8056        TCGA-86-8073        TCGA-86-8074        TCGA-86-8281 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8669        TCGA-86-8673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-91-6829 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6836        TCGA-93-7347        TCGA-93-7348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-8172        TCGA-97-8174        TCGA-97-8179 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-7458        TCGA-99-8025        TCGA-99-8028        TCGA-99-8032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444        TCGA-MN-A4N4 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS CNV         8   0   0   0
  8Q LOSS WILD-TYPE 225   9   4  14
D56V14, multiclass
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  R0           8               225
  R1           0                 9
  R2           0                 4
  RX           0                14

Clustering(57) Variable = 9p loss
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS CNV        74  31
  9P LOSS WILD-TYPE 190  54
      9P LOSS CNV 9P LOSS WILD-TYPE 
              105               244 
      9P LOSS CNV 9P LOSS WILD-TYPE 
               31                54 
$`9P LOSS CNV`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 
        3.98        14.01         9.96         8.02        20.05         8.98 
TCGA-05-4433 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-38-4628 TCGA-38-4630 
       24.00         4.96         2.96         2.04        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 
       11.64         5.19         3.48        16.37         0.30         9.93 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       16.41         5.33         1.64        18.87        17.46        17.59 
TCGA-44-8117 TCGA-44-A4SU TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 
        8.52         2.50        12.66        14.07        29.46        43.20 
TCGA-49-6742 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 
       15.02         9.27         8.78        35.87         8.45        12.26 
TCGA-50-5946 TCGA-50-6592 TCGA-50-6594 TCGA-50-6673 TCGA-53-7626 TCGA-55-1592 
       11.47        25.51        12.16         0.72        31.89        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 
       38.73        45.17         2.86         3.88        40.54         0.59 
TCGA-55-7576 TCGA-55-7726 TCGA-55-7907 TCGA-55-7914 TCGA-55-8090 TCGA-55-8092 
        1.32         1.02         0.53         0.10         0.20         0.85 
TCGA-55-8094 TCGA-55-8512 TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DG TCGA-62-8399 
        0.13         0.10         1.58         0.03         5.29        68.81 
TCGA-62-A46O TCGA-62-A472 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 
       47.77        17.75        39.09        37.02        44.38         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
        0.99         0.59         0.59         5.06         6.12        13.61 
TCGA-69-8255 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7147 
        4.21        29.95        15.35         0.46         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7161 TCGA-78-7166 
       20.58        35.93        21.86        32.09         7.04         8.48 
TCGA-78-7167 TCGA-78-7540 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 
       88.11        28.96        32.68         0.89         0.23         0.46 
TCGA-86-8054 TCGA-86-8074 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 
        0.62         0.79         0.69         0.53         0.62         1.45 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-91-6849 TCGA-95-7567 TCGA-95-7948 
       41.33         1.28        26.93         0.92         5.36         4.34 
TCGA-97-8179 TCGA-J2-8192 TCGA-J2-A4AD 
        0.49         5.03         9.44 

$`9P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 
       38.07        19.92        37.02        24.03        47.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       14.93        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
       25.02        15.02         1.02         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        47.61        85.32        37.71        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       10.22         8.32         6.44         6.21         4.60         6.84 
TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7672 
       32.45        36.49         9.80         5.03        18.31        13.74 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       76.21        28.11        28.57        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
        8.81        29.75        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
       49.28         8.05        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
        4.44        42.31         3.88        11.05         6.21        33.37 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
        8.38        35.11        13.74        48.62         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       24.99        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.28         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.69         0.69         3.02         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A493 TCGA-55-A494 TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 TCGA-64-1677 
        0.92         0.16        19.53        39.22        56.81        20.65 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       55.40        83.84         0.10        30.44        16.67        39.52 
TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 
        1.97         2.04         0.89         0.69        13.87        22.68 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        3.25         2.50         2.01        52.57        23.38        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7158 
       27.16        39.48        24.99        19.50        38.50         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 
       40.11        22.29       104.15       223.96        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 
        8.02        53.33        10.75        10.55        13.81         0.36 
TCGA-86-7953 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        1.12         0.33         0.43         1.41         0.85         0.76 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        0.85         1.12         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.99         1.28         1.22         0.03         1.15         0.36 
TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        4.18         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.07         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         5.36         4.80         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        1.45         5.56         3.72         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      9P LOSS CNV 9P LOSS WILD-TYPE 
             0.03              0.03 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            88.11            223.96 
      9P LOSS CNV 9P LOSS WILD-TYPE 
             8.48              7.92 
[1] "0.0 - 88.1 (8.5)"  "0.0 - 224.0 (7.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         54   63
  9P LOSS WILD-TYPE  157  115
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  FEMALE          54               157
  MALE            63               115
D57V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P LOSS CNV                                5
  9P LOSS WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P LOSS CNV                                      27
  9P LOSS WILD-TYPE                                52
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS CNV                                                       69
  9P LOSS WILD-TYPE                                                174
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P LOSS CNV                                                2
  9P LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P LOSS CNV                                                   3
  9P LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P LOSS CNV                                    0
  9P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P LOSS CNV                                        1
  9P LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P LOSS CNV                                  1                             5
  9P LOSS WILD-TYPE                            1                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P LOSS CNV                                                   2
  9P LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9P LOSS CNV                                       2
  9P LOSS WILD-TYPE                                 2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9P LOSS CNV                                  0
  9P LOSS WILD-TYPE                            3
D57V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS CNV        18  61   8   4
  9P LOSS WILD-TYPE  62 108  14  12
D57V6, multiclass
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  T1          18                62
  T2          61               108
  T3           8                14
  T4           4                12
                   vv
clus                 N0  N1 N2+N3
  9P LOSS CNV        47  28    15
  9P LOSS WILD-TYPE 125  30    37
D57V7, multiclass
       clus
vv      9P LOSS CNV 9P LOSS WILD-TYPE
  N0             47               125
  N1             28                30
  N2+N3          15                37
                   vv
clus                 M0  M1  MX
  9P LOSS CNV        63   6  18
  9P LOSS WILD-TYPE 139  10  45
D57V8, multiclass
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  M0          63               139
  M1           6                10
  MX          18                45
                   vv
clus                  I  II III  IV
  9P LOSS CNV        39  29  16   6
  9P LOSS WILD-TYPE 110  32  41  10
D57V9, multiclass
     clus
vv    9P LOSS CNV 9P LOSS WILD-TYPE
  I            39               110
  II           29                32
  III          16                41
  IV            6                10
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV          6  111
  9P LOSS WILD-TYPE   14  258
     clus
vv    9P LOSS CNV 9P LOSS WILD-TYPE
  NO            6                14
  YES         111               258
D57V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P LOSS CNV                                                23
  9P LOSS WILD-TYPE                                          77
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P LOSS CNV                                           27             25
  9P LOSS WILD-TYPE                                     50             37
                   vv
clus                LIFELONG NON-SMOKER
  9P LOSS CNV                        11
  9P LOSS WILD-TYPE                  25
D57V12, multiclass
                                             clus
vv                                            9P LOSS CNV 9P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          23                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS               27                50
  CURRENT SMOKER                                       25                37
  LIFELONG NON-SMOKER                                  11                25
D57V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS CNV        68   3   2   6
  9P LOSS WILD-TYPE 165   6   2   8
D57V14, multiclass
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  R0          68               165
  R1           3                 6
  R2           2                 2
  RX           6                 8

Clustering(58) Variable = 9q loss
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS CNV        62  25
  9Q LOSS WILD-TYPE 202  60
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               87               262 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               25                60 
$`9Q LOSS CNV`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4418 TCGA-05-4432 TCGA-05-4433 TCGA-05-5425 
        3.98         8.02         8.98        25.02        24.00         2.96 
TCGA-05-5715 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        2.04        47.61        49.02        35.28        11.64         5.19 
TCGA-44-5644 TCGA-44-6144 TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       16.37         0.30         5.33        18.87        17.46        17.59 
TCGA-44-8117 TCGA-44-A4SU TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 
        8.52         2.50        12.66        14.07        29.46        43.20 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6594 TCGA-50-6673 
       35.87         8.45        12.26        11.47        12.16         0.72 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 
       23.05        38.73        45.17         2.86         3.88        40.54 
TCGA-55-7281 TCGA-55-7726 TCGA-55-7907 TCGA-55-7914 TCGA-55-8094 TCGA-55-8512 
        0.59         1.02         0.53         0.10         0.13         0.10 
TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A470 
        0.03         0.16         5.29        68.81        47.77        39.22 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 
       37.02        44.38        83.84        16.67         0.99         0.59 
TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-69-7973 TCGA-69-8255 TCGA-73-4662 
        0.59         5.06         6.12         7.56         4.21        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       15.35         0.46        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7633 TCGA-86-7711 
       35.93        40.11         7.04        88.11        32.68         0.89 
TCGA-86-7713 TCGA-86-7955 TCGA-86-8074 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.23         0.46         0.79         0.69         0.53         0.62 
TCGA-86-8668 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 
        1.45        41.33         1.28        26.93         1.12         5.36 
TCGA-95-7948 TCGA-J2-8192 TCGA-J2-A4AD 
        4.34         5.03         9.44 

$`9Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       47.05        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        25.02        15.02         1.02         4.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        0.99         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       37.71        28.37        44.61        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7672 
       16.41         9.80         5.03         1.64        18.31        13.74 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       76.21        28.11        28.57        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        29.75        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
        9.76        49.28         8.05         9.27         8.78        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 
       21.47        15.12         9.37         4.44        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 
       25.51        11.05         6.21        33.37         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       31.89        13.74        48.62         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 
       42.48        40.70        15.25         0.92        48.49         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.28         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.69         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 
        7.07         1.41         7.46         0.30         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-62-A46P TCGA-62-A472 
        1.02         0.95         1.58         0.92        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        39.09        55.40         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
       39.52         7.33         1.97         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 
       13.87        22.68        13.61         4.24         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         3.25         2.50         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       23.38        20.28         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       17.06       163.10        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09         5.88        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7953 TCGA-86-8054 
       28.96        10.55        13.81         0.36         1.12         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8359 
        0.33         0.43         1.41         0.85         0.76         0.85 
TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.12         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        1.28         1.22         0.03         1.15         0.36         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 
        0.92         1.02         9.76         4.18         6.08         0.07 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        1.45         5.56         3.72         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      9Q LOSS CNV 9Q LOSS WILD-TYPE 
             0.03              0.03 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            88.11            223.96 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            8.450             8.035 
[1] "0.0 - 88.1 (8.4)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
      "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"9Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV         52   47
  9Q LOSS WILD-TYPE  159  131
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  FEMALE          52               159
  MALE            47               131
D58V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q LOSS CNV                                5
  9Q LOSS WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q LOSS CNV                                      21
  9Q LOSS WILD-TYPE                                58
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS CNV                                                       60
  9Q LOSS WILD-TYPE                                                183
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q LOSS CNV                                                1
  9Q LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q LOSS CNV                                                   3
  9Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q LOSS CNV                                    0
  9Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q LOSS CNV                                        1
  9Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q LOSS CNV                                  0                             5
  9Q LOSS WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q LOSS CNV                                                   2
  9Q LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9Q LOSS CNV                                       1
  9Q LOSS WILD-TYPE                                 3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9Q LOSS CNV                                  0
  9Q LOSS WILD-TYPE                            3
D58V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS CNV        18  48   8   2
  9Q LOSS WILD-TYPE  62 121  14  14
D58V6, multiclass
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  T1          18                62
  T2          48               121
  T3           8                14
  T4           2                14
                   vv
clus                 N0  N1 N2+N3
  9Q LOSS CNV        42  21    11
  9Q LOSS WILD-TYPE 130  37    41
D58V7, multiclass
       clus
vv      9Q LOSS CNV 9Q LOSS WILD-TYPE
  N0             42               130
  N1             21                37
  N2+N3          11                41
                   vv
clus                 M0  M1  MX
  9Q LOSS CNV        51   6  15
  9Q LOSS WILD-TYPE 151  10  48
D58V8, multiclass
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  M0          51               151
  M1           6                10
  MX          15                48
                   vv
clus                  I  II III  IV
  9Q LOSS CNV        37  21  11   6
  9Q LOSS WILD-TYPE 112  40  46  10
D58V9, multiclass
     clus
vv    9Q LOSS CNV 9Q LOSS WILD-TYPE
  I            37               112
  II           21                40
  III          11                46
  IV            6                10
D58V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          3   96
  9Q LOSS WILD-TYPE   17  273
     clus
vv    9Q LOSS CNV 9Q LOSS WILD-TYPE
  NO            3                17
  YES          96               273
D58V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q LOSS CNV                                                22
  9Q LOSS WILD-TYPE                                          78
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q LOSS CNV                                           17             25
  9Q LOSS WILD-TYPE                                     60             37
                   vv
clus                LIFELONG NON-SMOKER
  9Q LOSS CNV                         9
  9Q LOSS WILD-TYPE                  27
D58V12, multiclass
                                             clus
vv                                            9Q LOSS CNV 9Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          22                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS               17                60
  CURRENT SMOKER                                       25                37
  LIFELONG NON-SMOKER                                   9                27
D58V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS CNV        59   4   2   5
  9Q LOSS WILD-TYPE 174   5   2   9
D58V14, multiclass
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  R0          59               174
  R1           4                 5
  R2           2                 2
  RX           5                 9

Clustering(59) Variable = 10p loss
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS CNV        16   8
  10P LOSS WILD-TYPE 248  77
      10P LOSS CNV 10P LOSS WILD-TYPE 
                24                325 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                 8                 77 
$`10P LOSS CNV`
TCGA-05-5715 TCGA-38-4631 TCGA-38-6178 TCGA-44-3919 TCGA-44-6779 TCGA-44-7660 
        2.04        11.64         5.19         6.21        16.41         5.33 
TCGA-44-7669 TCGA-44-A4SU TCGA-49-4488 TCGA-50-5931 TCGA-50-6591 TCGA-55-1596 
       18.87         2.50        28.57         8.78         3.88        45.17 
TCGA-55-7281 TCGA-55-8514 TCGA-64-1676 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
        0.59         6.97        56.81        83.84         0.10        16.67 
TCGA-67-3770 TCGA-78-7147 TCGA-78-7540 TCGA-86-8054 TCGA-86-8278 TCGA-95-7043 
        0.99        19.27        28.96         0.62         0.76         0.07 

$`10P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 
        2.70        63.72        32.45        36.49         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
        1.64        18.31        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.38         6.64         8.09         4.44         3.75 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         0.10         4.80         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       47.77        19.53        39.22        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       55.40        37.02        44.38        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 
       20.42        17.06       163.10        27.16         5.65        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 
        0.89         0.23         1.12         0.46         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.79         1.41         0.85         0.69         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76         8.65         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      10P LOSS CNV 10P LOSS WILD-TYPE 
              0.07               0.03 
      10P LOSS CNV 10P LOSS WILD-TYPE 
             83.84             223.96 
      10P LOSS CNV 10P LOSS WILD-TYPE 
              6.59               8.09 
[1] "0.1 - 83.8 (6.6)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"10P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV         19    8
  10P LOSS WILD-TYPE  192  170
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  FEMALE           19                192
  MALE              8                170
D59V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P LOSS CNV                                2
  10P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P LOSS CNV                                       2
  10P LOSS WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS CNV                                                       20
  10P LOSS WILD-TYPE                                                223
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P LOSS CNV                                                1
  10P LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P LOSS CNV                                                   0
  10P LOSS WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P LOSS CNV                                    0
  10P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P LOSS CNV                                        1
  10P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P LOSS CNV                                  0                             0
  10P LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P LOSS CNV                                                   0
  10P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10P LOSS CNV                                       0
  10P LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10P LOSS CNV                                  1
  10P LOSS WILD-TYPE                            2
D59V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS CNV         8  13   1   1
  10P LOSS WILD-TYPE  72 156  21  15
D59V6, multiclass
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  T1            8                 72
  T2           13                156
  T3            1                 21
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  10P LOSS CNV        16   5     2
  10P LOSS WILD-TYPE 156  53    50
D59V7, multiclass
       clus
vv      10P LOSS CNV 10P LOSS WILD-TYPE
  N0              16                156
  N1               5                 53
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  10P LOSS CNV        13   1   7
  10P LOSS WILD-TYPE 189  15  56
D59V8, multiclass
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  M0           13                189
  M1            1                 15
  MX            7                 56
                    vv
clus                   I  II III  IV
  10P LOSS CNV        12   6   3   1
  10P LOSS WILD-TYPE 137  55  54  15
D59V9, multiclass
     clus
vv    10P LOSS CNV 10P LOSS WILD-TYPE
  I             12                137
  II             6                 55
  III            3                 54
  IV             1                 15
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV          0   27
  10P LOSS WILD-TYPE   20  342
     clus
vv    10P LOSS CNV 10P LOSS WILD-TYPE
  NO             0                 20
  YES           27                342
D59V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P LOSS CNV                                                 5
  10P LOSS WILD-TYPE                                          95
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P LOSS CNV                                            4              7
  10P LOSS WILD-TYPE                                     73             55
                    vv
clus                 LIFELONG NON-SMOKER
  10P LOSS CNV                         6
  10P LOSS WILD-TYPE                  30
D59V12, multiclass
                                             clus
vv                                            10P LOSS CNV 10P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5                 95
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    6                 30
D59V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS CNV        18   1   0   0
  10P LOSS WILD-TYPE 215   8   4  14
D59V14, multiclass
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  R0           18                215
  R1            1                  8
  R2            0                  4
  RX            0                 14

Clustering(60) Variable = 10q loss
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS CNV        21   8
  10Q LOSS WILD-TYPE 243  77
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                29                320 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                 8                 77 
$`10Q LOSS CNV`
TCGA-05-4397 TCGA-05-5715 TCGA-38-4631 TCGA-44-3919 TCGA-44-7660 TCGA-44-7669 
       24.03         2.04        11.64         6.21         5.33        18.87 
TCGA-44-A4SU TCGA-49-4505 TCGA-50-6591 TCGA-55-5899 TCGA-55-7281 TCGA-55-8514 
        2.50        14.07         3.88         2.86         0.59         6.97 
TCGA-55-A4DG TCGA-64-1676 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-69-8255 
        5.29        56.81        83.84        16.67         0.99         4.21 
TCGA-73-4668 TCGA-78-7147 TCGA-78-7535 TCGA-78-7540 TCGA-78-7542 TCGA-86-7955 
       15.35        19.27        31.20        28.96        10.55         0.46 
TCGA-86-8278 TCGA-91-6847 TCGA-95-7043 TCGA-95-7948 TCGA-L9-A443 
        0.76        26.93         0.07         4.34         3.81 

$`10Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.75        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        44.38         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 
       20.42        17.06       163.10        27.16         5.65        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.75        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.85         0.69         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        6.08         1.12         5.36         0.69         1.32        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              0.07               0.03 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
             83.84             223.96 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              6.21               8.09 
[1] "0.1 - 83.8 (6.2)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"10Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV         19   14
  10Q LOSS WILD-TYPE  192  164
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  FEMALE           19                192
  MALE             14                164
D60V4, continuous
[1] "Remove cluster labels:" "10Q LOSS CNV"          
clus
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                 2                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4676         TCGA-75-5122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q LOSS CNV                                1
  10Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q LOSS CNV                                       5
  10Q LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS CNV                                                       21
  10Q LOSS WILD-TYPE                                                222
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q LOSS CNV                                                1
  10Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q LOSS CNV                                                   0
  10Q LOSS WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q LOSS CNV                                    0
  10Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q LOSS CNV                                        2
  10Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q LOSS CNV                                  0                             0
  10Q LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q LOSS CNV                                                   2
  10Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10Q LOSS CNV                                       0
  10Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10Q LOSS CNV                                  1
  10Q LOSS WILD-TYPE                            2
D60V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS CNV         8  17   0   0
  10Q LOSS WILD-TYPE  72 152  22  16
D60V6, multiclass
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  T1            8                 72
  T2           17                152
  T3            0                 22
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  10Q LOSS CNV        17   7     1
  10Q LOSS WILD-TYPE 155  51    51
D60V7, multiclass
       clus
vv      10Q LOSS CNV 10Q LOSS WILD-TYPE
  N0              17                155
  N1               7                 51
  N2+N3            1                 51
                    vv
clus                  M0  M1  MX
  10Q LOSS CNV        18   1   5
  10Q LOSS WILD-TYPE 184  15  58
D60V8, multiclass
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  M0           18                184
  M1            1                 15
  MX            5                 58
                    vv
clus                   I  II III  IV
  10Q LOSS CNV        16   6   1   1
  10Q LOSS WILD-TYPE 133  55  56  15
D60V9, multiclass
     clus
vv    10Q LOSS CNV 10Q LOSS WILD-TYPE
  I             16                133
  II             6                 55
  III            1                 56
  IV             1                 15
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          0   33
  10Q LOSS WILD-TYPE   20  336
     clus
vv    10Q LOSS CNV 10Q LOSS WILD-TYPE
  NO             0                 20
  YES           33                336
D60V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q LOSS CNV                                                 8
  10Q LOSS WILD-TYPE                                          92
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q LOSS CNV                                            4              8
  10Q LOSS WILD-TYPE                                     73             54
                    vv
clus                 LIFELONG NON-SMOKER
  10Q LOSS CNV                         5
  10Q LOSS WILD-TYPE                  31
D60V12, multiclass
                                             clus
vv                                            10Q LOSS CNV 10Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            8                 92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                         8                 54
  LIFELONG NON-SMOKER                                    5                 31
D60V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS CNV        23   0   0   2
  10Q LOSS WILD-TYPE 210   9   4  12
D60V14, multiclass
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  R0           23                210
  R1            0                  9
  R2            0                  4
  RX            2                 12

Clustering(61) Variable = 11p loss
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS CNV        19   5
  11P LOSS WILD-TYPE 245  80
      11P LOSS CNV 11P LOSS WILD-TYPE 
                24                325 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                 5                 80 
$`11P LOSS CNV`
TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-44-5643 TCGA-49-4510 TCGA-50-6594 
       26.01         8.68        47.61         3.48        29.46        12.16 
TCGA-53-7624 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-A490 TCGA-55-A492 
       35.11        48.62        45.17         2.86         1.58         0.03 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5815 TCGA-73-4670 TCGA-78-7145 TCGA-78-7535 
       56.81        83.84         7.33         0.46        27.16        31.20 
TCGA-86-7711 TCGA-86-7953 TCGA-91-6836 TCGA-95-7948 TCGA-97-8174 TCGA-L4-A4E5 
        0.89         1.12         0.36         4.34         5.36         6.97 

$`11P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         6.21         4.60        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       11.05         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       13.74        23.05        38.73         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A493 TCGA-55-A494 
        3.45         1.08         1.02         0.95         0.92         0.16 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        5.29        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       20.65        39.09        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 
       32.68        13.81         0.36         0.23         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        1.12         0.07         5.36         0.69         1.32        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         3.48         5.95         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         9.27         7.82         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      11P LOSS CNV 11P LOSS WILD-TYPE 
              0.03               0.03 
      11P LOSS CNV 11P LOSS WILD-TYPE 
             83.84             223.96 
      11P LOSS CNV 11P LOSS WILD-TYPE 
             8.005              8.050 
[1] "0.0 - 83.8 (8.0)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         14   13
  11P LOSS WILD-TYPE  197  165
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  FEMALE           14                197
  MALE             13                165
D61V4, continuous
[1] "Remove cluster labels:" "11P LOSS CNV"          
clus
      11P LOSS CNV 11P LOSS WILD-TYPE 
                 2                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-86-7955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P LOSS CNV                                0
  11P LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P LOSS CNV                                       4
  11P LOSS WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS CNV                                                       20
  11P LOSS WILD-TYPE                                                223
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P LOSS CNV                                                0
  11P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P LOSS CNV                                                   1
  11P LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P LOSS CNV                                    1
  11P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P LOSS CNV                                        0
  11P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P LOSS CNV                                  0                             1
  11P LOSS WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P LOSS CNV                                                   0
  11P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11P LOSS CNV                                       0
  11P LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11P LOSS CNV                                  0
  11P LOSS WILD-TYPE                            3
D61V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS CNV         5  13   2   1
  11P LOSS WILD-TYPE  75 156  20  15
D61V6, multiclass
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  T1            5                 75
  T2           13                156
  T3            2                 20
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  11P LOSS CNV        10   8     3
  11P LOSS WILD-TYPE 162  50    49
D61V7, multiclass
       clus
vv      11P LOSS CNV 11P LOSS WILD-TYPE
  N0              10                162
  N1               8                 50
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  11P LOSS CNV        15   3   3
  11P LOSS WILD-TYPE 187  13  60
D61V8, multiclass
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  M0           15                187
  M1            3                 13
  MX            3                 60
                    vv
clus                   I  II III  IV
  11P LOSS CNV         8   7   3   3
  11P LOSS WILD-TYPE 141  54  54  13
D61V9, multiclass
     clus
vv    11P LOSS CNV 11P LOSS WILD-TYPE
  I              8                141
  II             7                 54
  III            3                 54
  IV             3                 13
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV          1   26
  11P LOSS WILD-TYPE   19  343
     clus
vv    11P LOSS CNV 11P LOSS WILD-TYPE
  NO             1                 19
  YES           26                343
D61V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P LOSS CNV                                                 7
  11P LOSS WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P LOSS CNV                                            2             12
  11P LOSS WILD-TYPE                                     75             50
                    vv
clus                 LIFELONG NON-SMOKER
  11P LOSS CNV                         0
  11P LOSS WILD-TYPE                  36
D61V12, multiclass
                                             clus
vv                                            11P LOSS CNV 11P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2                 75
  CURRENT SMOKER                                        12                 50
  LIFELONG NON-SMOKER                                    0                 36
D61V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS CNV        20   1   0   1
  11P LOSS WILD-TYPE 213   8   4  13
D61V14, multiclass
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  R0           20                213
  R1            1                  8
  R2            0                  4
  RX            1                 13

Clustering(62) Variable = 11q loss
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS CNV        18   5
  11Q LOSS WILD-TYPE 246  80
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                23                326 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                 5                 80 
$`11Q LOSS CNV`
TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-38-4625 TCGA-44-4112 TCGA-44-5643 
       26.01        24.00         8.68        47.61         4.60         3.48 
TCGA-49-4510 TCGA-50-6594 TCGA-55-1595 TCGA-55-8094 TCGA-55-A490 TCGA-62-A470 
       29.46        12.16        48.62         0.13         1.58        39.22 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5778 TCGA-64-5815 TCGA-69-7764 TCGA-73-4662 
       39.09        83.84        30.44         7.33        13.61        29.95 
TCGA-78-7145 TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-97-8174 
       27.16         1.12         0.62         0.79         5.36 

$`11Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       35.54        46.72        14.07        32.84         8.81        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.16         5.29        68.81        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       56.81        20.65        55.40        37.02        44.38         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8055 
       13.81         0.36         0.89         0.23         0.46         0.33 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.43         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         3.48         5.95         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      11Q LOSS CNV 11Q LOSS WILD-TYPE 
              0.13               0.03 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             83.84             223.96 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             13.61               7.92 
[1] "0.1 - 83.8 (13.6)" "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         11   13
  11Q LOSS WILD-TYPE  200  165
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  FEMALE           11                200
  MALE             13                165
D62V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q LOSS CNV                                2
  11Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q LOSS CNV                                       5
  11Q LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS CNV                                                       12
  11Q LOSS WILD-TYPE                                                231
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q LOSS CNV                                                0
  11Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q LOSS CNV                                                   2
  11Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q LOSS CNV                                    1
  11Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q LOSS CNV                                        0
  11Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q LOSS CNV                                  0                             2
  11Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q LOSS CNV                                                   0
  11Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11Q LOSS CNV                                       0
  11Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11Q LOSS CNV                                  0
  11Q LOSS WILD-TYPE                            3
D62V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS CNV         4  11   1   1
  11Q LOSS WILD-TYPE  76 158  21  15
D62V6, multiclass
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  T1            4                 76
  T2           11                158
  T3            1                 21
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  11Q LOSS CNV         9   5     3
  11Q LOSS WILD-TYPE 163  53    49
D62V7, multiclass
       clus
vv      11Q LOSS CNV 11Q LOSS WILD-TYPE
  N0               9                163
  N1               5                 53
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  11Q LOSS CNV        16   1   0
  11Q LOSS WILD-TYPE 186  15  63
D62V8, multiclass
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  M0           16                186
  M1            1                 15
  MX            0                 63
                    vv
clus                   I  II III  IV
  11Q LOSS CNV         8   5   3   1
  11Q LOSS WILD-TYPE 141  56  54  15
D62V9, multiclass
     clus
vv    11Q LOSS CNV 11Q LOSS WILD-TYPE
  I              8                141
  II             5                 56
  III            3                 54
  IV             1                 15
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV          2   22
  11Q LOSS WILD-TYPE   18  347
     clus
vv    11Q LOSS CNV 11Q LOSS WILD-TYPE
  NO             2                 18
  YES           22                347
D62V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q LOSS CNV                                                 7
  11Q LOSS WILD-TYPE                                          93
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q LOSS CNV                                            7              3
  11Q LOSS WILD-TYPE                                     70             59
                    vv
clus                 LIFELONG NON-SMOKER
  11Q LOSS CNV                         0
  11Q LOSS WILD-TYPE                  36
D62V12, multiclass
                                             clus
vv                                            11Q LOSS CNV 11Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 7                 70
  CURRENT SMOKER                                         3                 59
  LIFELONG NON-SMOKER                                    0                 36
D62V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS CNV        17   1   0   1
  11Q LOSS WILD-TYPE 216   8   4  13
D62V14, multiclass
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  R0           17                216
  R1            1                  8
  R2            0                  4
  RX            1                 13

Clustering(63) Variable = 12p loss
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS CNV        24   8
  12P LOSS WILD-TYPE 240  77
      12P LOSS CNV 12P LOSS WILD-TYPE 
                32                317 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 8                 77 
$`12P LOSS CNV`
TCGA-05-4249 TCGA-44-2666 TCGA-44-7671 TCGA-50-5051 TCGA-50-5932 TCGA-50-5939 
       38.07         3.19        17.59        14.96        35.87        15.12 
TCGA-50-5942 TCGA-50-6594 TCGA-55-5899 TCGA-55-7727 TCGA-55-7914 TCGA-55-8087 
        4.44        12.16         2.86         1.02         0.10         0.69 
TCGA-55-8514 TCGA-55-A4DG TCGA-64-1676 TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 
        6.97         5.29        56.81        30.44         1.97        13.87 
TCGA-69-8253 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 TCGA-86-8073 TCGA-86-8074 
        3.25         1.25        19.27        31.20         0.43         0.79 
TCGA-86-8358 TCGA-91-6847 TCGA-91-6849 TCGA-95-7043 TCGA-95-7947 TCGA-95-7948 
        0.62        26.93         0.92         0.07         1.32         4.34 
TCGA-97-7547 TCGA-97-7938 
       47.18         0.59 

$`12P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.87        17.46        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 
        8.78        77.88        21.47         8.45         9.37        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        1.41         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 
        0.95         1.58         0.03         0.92         0.16        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       47.77        19.53        39.22        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       55.40        37.02        44.38        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       20.28        15.35         0.46         1.32         4.01        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 
        0.23         1.12         0.46         0.62         0.33         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 
        0.85         0.76         0.69         0.53         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         4.18         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         5.36         0.69        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        6.97         2.50         3.81         0.20        20.42 

      12P LOSS CNV 12P LOSS WILD-TYPE 
              0.07               0.03 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             56.81             223.96 
      12P LOSS CNV 12P LOSS WILD-TYPE 
              4.39               8.22 
[1] "0.1 - 56.8 (4.4)"  "0.0 - 224.0 (8.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P LOSS WILD-TYPE"       "12P LOSS CNV"       "12P LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
      "12P LOSS CNV"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P LOSS WILD-TYPE"       "12P LOSS CNV"       "12P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"12P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "12P LOSS CNV" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P LOSS WILD-TYPE"       "12P LOSS CNV"       "12P LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
      "12P LOSS CNV"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P LOSS WILD-TYPE"       "12P LOSS CNV"       "12P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV         18   16
  12P LOSS WILD-TYPE  193  162
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  FEMALE           18                193
  MALE             16                162
D63V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P LOSS CNV                                0
  12P LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P LOSS CNV                                       6
  12P LOSS WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS CNV                                                       22
  12P LOSS WILD-TYPE                                                221
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P LOSS CNV                                                0
  12P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P LOSS CNV                                                   3
  12P LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P LOSS CNV                                    0
  12P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P LOSS CNV                                        0
  12P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P LOSS CNV                                  0                             2
  12P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P LOSS CNV                                                   1
  12P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12P LOSS CNV                                       0
  12P LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12P LOSS CNV                                  0
  12P LOSS WILD-TYPE                            3
D63V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS CNV         9  15   1   0
  12P LOSS WILD-TYPE  71 154  21  16
D63V6, multiclass
    clus
vv   12P LOSS CNV 12P LOSS WILD-TYPE
  T1            9                 71
  T2           15                154
  T3            1                 21
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  12P LOSS CNV        16   5     4
  12P LOSS WILD-TYPE 156  53    48
D63V7, multiclass
       clus
vv      12P LOSS CNV 12P LOSS WILD-TYPE
  N0              16                156
  N1               5                 53
  N2+N3            4                 48
                    vv
clus                  M0  M1  MX
  12P LOSS CNV        17   0   8
  12P LOSS WILD-TYPE 185  16  55
D63V8, multiclass
    clus
vv   12P LOSS CNV 12P LOSS WILD-TYPE
  M0           17                185
  M1            0                 16
  MX            8                 55
                    vv
clus                   I  II III  IV
  12P LOSS CNV        16   4   4   0
  12P LOSS WILD-TYPE 133  57  53  16
D63V9, multiclass
     clus
vv    12P LOSS CNV 12P LOSS WILD-TYPE
  I             16                133
  II             4                 57
  III            4                 53
  IV             0                 16
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          2   32
  12P LOSS WILD-TYPE   18  337
     clus
vv    12P LOSS CNV 12P LOSS WILD-TYPE
  NO             2                 18
  YES           32                337
D63V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P LOSS CNV                                                 6
  12P LOSS WILD-TYPE                                          94
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P LOSS CNV                                           11              7
  12P LOSS WILD-TYPE                                     66             55
                    vv
clus                 LIFELONG NON-SMOKER
  12P LOSS CNV                         0
  12P LOSS WILD-TYPE                  36
D63V12, multiclass
                                             clus
vv                                            12P LOSS CNV 12P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6                 94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                11                 66
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    0                 36
D63V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS CNV        21   0   0   0
  12P LOSS WILD-TYPE 212   9   4  14
D63V14, multiclass
    clus
vv   12P LOSS CNV 12P LOSS WILD-TYPE
  R0           21                212
  R1            0                  9
  R2            0                  4
  RX            0                 14

Clustering(64) Variable = 12q loss
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS CNV        11   8
  12Q LOSS WILD-TYPE 253  77
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                19                330 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 8                 77 
$`12Q LOSS CNV`
TCGA-44-6779 TCGA-44-7671 TCGA-50-5932 TCGA-50-5939 TCGA-50-6594 TCGA-55-6984 
       16.41        17.59        35.87        15.12        12.16        24.99 
TCGA-55-7727 TCGA-55-8514 TCGA-55-A4DG TCGA-64-5778 TCGA-67-6217 TCGA-73-4677 
        1.02         6.97         5.29        30.44        13.87         1.25 
TCGA-78-7147 TCGA-78-7535 TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 TCGA-95-7948 
       19.27        31.20        26.93         1.02         0.07         4.34 
TCGA-97-7547 
       47.18 

$`12Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.31        18.87        17.46        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
        7.76         2.20        45.34        32.71        60.03        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         0.10         4.80         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         0.16        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       55.40        37.02        44.38        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        4.01        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36         0.89         0.23         1.12         0.46         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        4.18         0.92         9.76         4.18         6.08         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        5.36         0.69         1.32        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
        8.65         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 

      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              0.07               0.03 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             47.18             223.96 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             15.12               7.92 
[1] "0.1 - 47.2 (15.1)" "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV         10   11
  12Q LOSS WILD-TYPE  201  167
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  FEMALE           10                201
  MALE             11                167
D64V4, continuous
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-69-7974         TCGA-71-6725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-7458 
"12Q LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q LOSS CNV                                0
  12Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q LOSS CNV                                       5
  12Q LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS CNV                                                       13
  12Q LOSS WILD-TYPE                                                230
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q LOSS CNV                                                0
  12Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q LOSS CNV                                                   1
  12Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q LOSS CNV                                    0
  12Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q LOSS CNV                                        0
  12Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q LOSS CNV                                  0                             1
  12Q LOSS WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q LOSS CNV                                                   1
  12Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12Q LOSS CNV                                       0
  12Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12Q LOSS CNV                                  0
  12Q LOSS WILD-TYPE                            3
D64V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS CNV         3  13   2   0
  12Q LOSS WILD-TYPE  77 156  20  16
D64V6, multiclass
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  T1            3                 77
  T2           13                156
  T3            2                 20
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  12Q LOSS CNV        10   6     2
  12Q LOSS WILD-TYPE 162  52    50
D64V7, multiclass
       clus
vv      12Q LOSS CNV 12Q LOSS WILD-TYPE
  N0              10                162
  N1               6                 52
  N2+N3            2                 50
                    vv
clus                  M0  M1  MX
  12Q LOSS CNV        12   0   6
  12Q LOSS WILD-TYPE 190  16  57
D64V8, multiclass
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  M0           12                190
  M1            0                 16
  MX            6                 57
                    vv
clus                   I  II III  IV
  12Q LOSS CNV         9   7   2   0
  12Q LOSS WILD-TYPE 140  54  55  16
D64V9, multiclass
     clus
vv    12Q LOSS CNV 12Q LOSS WILD-TYPE
  I              9                140
  II             7                 54
  III            2                 55
  IV             0                 16
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          0   21
  12Q LOSS WILD-TYPE   20  348
     clus
vv    12Q LOSS CNV 12Q LOSS WILD-TYPE
  NO             0                 20
  YES           21                348
D64V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q LOSS CNV                                                 5
  12Q LOSS WILD-TYPE                                          95
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q LOSS CNV                                            8              3
  12Q LOSS WILD-TYPE                                     69             59
                    vv
clus                 LIFELONG NON-SMOKER
  12Q LOSS CNV                         0
  12Q LOSS WILD-TYPE                  36
D64V12, multiclass
                                             clus
vv                                            12Q LOSS CNV 12Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5                 95
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 8                 69
  CURRENT SMOKER                                         3                 59
  LIFELONG NON-SMOKER                                    0                 36
D64V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS CNV        11   0   0   0
  12Q LOSS WILD-TYPE 222   9   4  14
D64V14, multiclass
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  R0           11                222
  R1            0                  9
  R2            0                  4
  RX            0                 14

Clustering(65) Variable = 13q loss
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS CNV        57  23
  13Q LOSS WILD-TYPE 207  62
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                80                269 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                23                 62 
$`13Q LOSS CNV`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4432 
        3.98        24.03        47.05         8.02        20.05        25.02 
TCGA-05-5423 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-38-6178 
        4.96         5.95         8.68        47.61        44.61         5.19 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6779 TCGA-44-7669 TCGA-44-8119 TCGA-44-A4SU 
        3.48        16.37        16.41        18.87         3.22         2.50 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-50-5051 TCGA-50-5931 TCGA-50-5935 
        8.81        29.46        29.75        14.96         8.78        21.47 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 
        8.45        12.26        33.37         8.38        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6981 TCGA-55-7576 TCGA-55-7903 
       48.62        45.17         2.86        45.34         1.32         0.62 
TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 TCGA-55-A48Z TCGA-62-A46O TCGA-62-A472 
        0.13         6.97         1.58         0.95        47.77        17.75 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1681 TCGA-64-5779 TCGA-67-3770 TCGA-69-7760 
       56.81        39.09        44.38        16.67         0.99         5.06 
TCGA-69-7764 TCGA-69-7979 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-7499 
       13.61         2.93        23.38        29.95        15.35        17.06 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7154 TCGA-78-7155 TCGA-78-7539 
       27.16         5.65        19.27        19.50        38.50        10.75 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8075 TCGA-86-8279 
        0.89         0.23         1.12         0.62         1.41         0.69 
TCGA-86-8280 TCGA-86-A4D0 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-95-7948 
        0.53         0.99        41.33         1.28         0.36         4.34 
TCGA-97-7546 TCGA-97-7554 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE 
       31.66         8.65         5.56         5.03         9.44         9.27 
TCGA-L4-A4E5 TCGA-L9-A443 
        6.97         3.81 

$`13Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 
       38.07        19.92        14.01        37.02         9.96         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       14.93         8.98        29.95        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       28.37        35.28        11.64        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 
        9.80         5.33         5.03         1.64        18.31        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       17.59        13.74         8.52         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        4.44         3.75        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 
       35.54        46.72        14.07        32.84        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       35.87        77.88        15.12         9.37         4.44        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 
        0.72        35.11        31.89        38.73         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 
        3.88         5.46         7.76         2.20        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 
        7.46         0.30         0.10         4.80         0.49         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 
        2.14         3.45         1.08         1.02         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 
        0.92         0.16         5.29        68.81        19.53        39.22 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        55.40        37.02        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.89         0.69        13.87         6.12        22.68         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        4.21         2.01        52.57        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 
        4.01         1.25        20.42       163.10        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        24.99        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       26.53        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 
       32.68        13.81         0.36         0.46         0.33         0.43 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
        0.79         0.85         0.76         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4P8 
        1.45         1.08         0.56         0.49         0.33         1.28 
TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.22         0.03         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        5.36         0.69         1.32        47.18        48.53        43.76 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-J2-8194 TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        3.72         7.82         2.50         0.20        20.42 

      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              0.13               0.03 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
             56.81             223.96 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              9.04               7.46 
[1] "0.1 - 56.8 (9.0)"  "0.0 - 224.0 (7.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"13Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         51   37
  13Q LOSS WILD-TYPE  160  141
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  FEMALE           51                160
  MALE             37                141
D65V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q LOSS CNV                                6
  13Q LOSS WILD-TYPE                          5
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q LOSS CNV                                      15
  13Q LOSS WILD-TYPE                                64
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS CNV                                                       58
  13Q LOSS WILD-TYPE                                                185
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q LOSS CNV                                                0
  13Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q LOSS CNV                                                   5
  13Q LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q LOSS CNV                                    1
  13Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q LOSS CNV                                        1
  13Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q LOSS CNV                                  0                             1
  13Q LOSS WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q LOSS CNV                                                   0
  13Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  13Q LOSS CNV                                       1
  13Q LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  13Q LOSS CNV                                  0
  13Q LOSS WILD-TYPE                            3
D65V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS CNV        17  39   4   4
  13Q LOSS WILD-TYPE  63 130  18  12
D65V6, multiclass
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  T1           17                 63
  T2           39                130
  T3            4                 18
  T4            4                 12
                    vv
clus                  N0  N1 N2+N3
  13Q LOSS CNV        32  16    15
  13Q LOSS WILD-TYPE 140  42    37
D65V7, multiclass
       clus
vv      13Q LOSS CNV 13Q LOSS WILD-TYPE
  N0              32                140
  N1              16                 42
  N2+N3           15                 37
                    vv
clus                  M0  M1  MX
  13Q LOSS CNV        46   5  11
  13Q LOSS WILD-TYPE 156  11  52
D65V8, multiclass
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  M0           46                156
  M1            5                 11
  MX           11                 52
                    vv
clus                   I  II III  IV
  13Q LOSS CNV        27  15  17   5
  13Q LOSS WILD-TYPE 122  46  40  11
D65V9, multiclass
     clus
vv    13Q LOSS CNV 13Q LOSS WILD-TYPE
  I             27                122
  II            15                 46
  III           17                 40
  IV             5                 11
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV          5   83
  13Q LOSS WILD-TYPE   15  286
     clus
vv    13Q LOSS CNV 13Q LOSS WILD-TYPE
  NO             5                 15
  YES           83                286
D65V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q LOSS CNV                                                19
  13Q LOSS WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q LOSS CNV                                           16             18
  13Q LOSS WILD-TYPE                                     61             44
                    vv
clus                 LIFELONG NON-SMOKER
  13Q LOSS CNV                         7
  13Q LOSS WILD-TYPE                  29
D65V12, multiclass
                                             clus
vv                                            13Q LOSS CNV 13Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           19                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                16                 61
  CURRENT SMOKER                                        18                 44
  LIFELONG NON-SMOKER                                    7                 29
D65V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS CNV        54   3   2   3
  13Q LOSS WILD-TYPE 179   6   2  11
D65V14, multiclass
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  R0           54                179
  R1            3                  6
  R2            2                  2
  RX            3                 11

Clustering(66) Variable = 14q loss
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS CNV        26   8
  14Q LOSS WILD-TYPE 238  77
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                34                315 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                 8                 77 
$`14Q LOSS CNV`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-38-4625 TCGA-38-4632 TCGA-44-5643 
        9.96        20.05        26.01        47.61        44.61         3.48 
TCGA-44-6146 TCGA-44-7669 TCGA-44-7671 TCGA-49-4514 TCGA-50-5931 TCGA-55-1595 
        9.93        18.87        17.59        43.20         8.78        48.62 
TCGA-55-7281 TCGA-55-8092 TCGA-55-8094 TCGA-55-8514 TCGA-62-A46O TCGA-64-1680 
        0.59         0.85         0.13         6.97        47.77        37.02 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3774 TCGA-69-7980 TCGA-73-4662 TCGA-78-7146 
       30.44        16.67         0.59        12.56        29.95         5.65 
TCGA-78-7150 TCGA-78-7535 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8279 
       21.86        31.20         0.89         1.12         0.62         0.69 
TCGA-91-7771 TCGA-95-7948 TCGA-97-7547 TCGA-J2-A4AD 
        1.02         4.34        47.18         9.44 

$`14Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        11.64         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.31        17.46        13.74         8.52         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       35.11        31.89        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.20         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 
        0.92         0.16         5.29        68.81        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
       17.75        56.81        20.65        39.09        55.40        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7713 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
        0.36         0.23         0.46         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        1.41         0.85         0.76         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 
        1.15         0.36        26.93         4.18         0.92         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        1.32        31.66        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        5.03         3.72         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        3.81         0.20        20.42 

      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              0.13               0.03 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
             48.62             223.96 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
             11.26               7.76 
[1] "0.1 - 48.6 (11.3)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV         22   20
  14Q LOSS WILD-TYPE  189  158
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  FEMALE           22                189
  MALE             20                158
D66V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q LOSS CNV                                2
  14Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q LOSS CNV                                       8
  14Q LOSS WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS CNV                                                       25
  14Q LOSS WILD-TYPE                                                218
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q LOSS CNV                                                0
  14Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q LOSS CNV                                                   3
  14Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q LOSS CNV                                    1
  14Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q LOSS CNV                                        0
  14Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q LOSS CNV                                  1                             2
  14Q LOSS WILD-TYPE                            1                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q LOSS CNV                                                   0
  14Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  14Q LOSS CNV                                       0
  14Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  14Q LOSS CNV                                  0
  14Q LOSS WILD-TYPE                            3
D66V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS CNV         5  21   2   1
  14Q LOSS WILD-TYPE  75 148  20  15
D66V6, multiclass
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  T1            5                 75
  T2           21                148
  T3            2                 20
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  14Q LOSS CNV        18   6     5
  14Q LOSS WILD-TYPE 154  52    47
D66V7, multiclass
       clus
vv      14Q LOSS CNV 14Q LOSS WILD-TYPE
  N0              18                154
  N1               6                 52
  N2+N3            5                 47
                    vv
clus                  M0  M1  MX
  14Q LOSS CNV        23   2   3
  14Q LOSS WILD-TYPE 179  14  60
D66V8, multiclass
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  M0           23                179
  M1            2                 14
  MX            3                 60
                    vv
clus                   I  II III  IV
  14Q LOSS CNV        15   6   5   2
  14Q LOSS WILD-TYPE 134  55  52  14
D66V9, multiclass
     clus
vv    14Q LOSS CNV 14Q LOSS WILD-TYPE
  I             15                134
  II             6                 55
  III            5                 52
  IV             2                 14
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          3   39
  14Q LOSS WILD-TYPE   17  330
     clus
vv    14Q LOSS CNV 14Q LOSS WILD-TYPE
  NO             3                 17
  YES           39                330
D66V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q LOSS CNV                                                10
  14Q LOSS WILD-TYPE                                          90
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q LOSS CNV                                           10              7
  14Q LOSS WILD-TYPE                                     67             55
                    vv
clus                 LIFELONG NON-SMOKER
  14Q LOSS CNV                         1
  14Q LOSS WILD-TYPE                  35
D66V12, multiclass
                                             clus
vv                                            14Q LOSS CNV 14Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10                 90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10                 67
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    1                 35
D66V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS CNV        28   0   0   3
  14Q LOSS WILD-TYPE 205   9   4  11
D66V14, multiclass
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  R0           28                205
  R1            0                  9
  R2            0                  4
  RX            3                 11

Clustering(67) Variable = 15q loss
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS CNV        50  19
  15Q LOSS WILD-TYPE 214  66
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                69                280 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                19                 66 
$`15Q LOSS CNV`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4402 TCGA-05-4424 TCGA-05-5425 TCGA-35-4123 
       38.07        47.05         8.02        30.02         2.96         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        8.68        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2659 TCGA-44-3919 TCGA-44-7660 TCGA-44-7667 TCGA-44-7670 TCGA-44-8117 
       17.39         6.21         5.33        18.31        17.46         8.52 
TCGA-44-A47F TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4514 TCGA-50-5051 
        8.09        28.57        12.66        46.72        43.20        14.96 
TCGA-50-5935 TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
       21.47         3.88        12.16         8.38        31.89        13.74 
TCGA-55-5899 TCGA-55-7281 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-8094 
        2.86         0.59         1.32         1.02         0.62         0.13 
TCGA-55-A490 TCGA-55-A4DG TCGA-62-A472 TCGA-64-1676 TCGA-64-1681 TCGA-64-5774 
        1.58         5.29        17.75        56.81        44.38        83.84 
TCGA-64-5779 TCGA-67-3770 TCGA-69-7973 TCGA-73-4662 TCGA-73-4668 TCGA-73-7499 
       16.67         0.99         7.56        29.95        15.35        17.06 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       27.16         5.65        19.27        88.11        31.20         8.02 
TCGA-78-7542 TCGA-86-8074 TCGA-86-8669 TCGA-86-A4D0 TCGA-91-6829 TCGA-91-6831 
       10.55         0.79         1.08         0.99        41.33         1.28 
TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 TCGA-J2-8192 
        0.36        26.93         1.12         5.36         8.65         5.03 
TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-L9-A443 
        9.44         6.97         3.81 

$`15Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 
        4.96         0.99         2.04         0.46         7.36        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       37.71        28.37        44.61        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.44         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 
       16.41         9.80         5.03         1.64        18.87        17.59 
TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS 
       13.74         3.22         8.38         6.64         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
        2.50        76.21        28.11        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       11.47        42.31        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        0.72        35.11        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       38.47         1.12         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 
        0.69         3.02         0.20         0.85         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 
        1.02         0.95         0.03         0.92         0.16        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       47.77        19.53        39.22        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       37.02         0.10        30.44        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 
        5.06         6.12        22.68        13.61         4.24         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 
        4.01         1.25        20.42       163.10        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
        8.48        26.53        53.33        10.75        28.96        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       13.81         0.36         0.89         0.23         1.12         0.46 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.43         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 
        0.56         0.49         0.33         1.28         1.22         0.03 
TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        6.08         0.07         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE 
       14.04        15.06         1.45         5.56         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         0.20        20.42 

      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              0.13               0.03 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
             88.11             223.96 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
             9.440              7.345 
[1] "0.1 - 88.1 (9.4)"  "0.0 - 224.0 (7.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"15Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV         48   33
  15Q LOSS WILD-TYPE  163  145
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  FEMALE           48                163
  MALE             33                145
D67V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q LOSS CNV                                1
  15Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q LOSS CNV                                      10
  15Q LOSS WILD-TYPE                                69
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS CNV                                                       59
  15Q LOSS WILD-TYPE                                                184
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q LOSS CNV                                                0
  15Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q LOSS CNV                                                   3
  15Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q LOSS CNV                                    0
  15Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q LOSS CNV                                        2
  15Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q LOSS CNV                                  0                             5
  15Q LOSS WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q LOSS CNV                                                   1
  15Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  15Q LOSS CNV                                       0
  15Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  15Q LOSS CNV                                  0
  15Q LOSS WILD-TYPE                            3
D67V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS CNV        20  35   6   3
  15Q LOSS WILD-TYPE  60 134  16  13
D67V6, multiclass
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  T1           20                 60
  T2           35                134
  T3            6                 16
  T4            3                 13
                    vv
clus                  N0  N1 N2+N3
  15Q LOSS CNV        38  13    12
  15Q LOSS WILD-TYPE 134  45    40
D67V7, multiclass
       clus
vv      15Q LOSS CNV 15Q LOSS WILD-TYPE
  N0              38                134
  N1              13                 45
  N2+N3           12                 40
                    vv
clus                  M0  M1  MX
  15Q LOSS CNV        44   4  13
  15Q LOSS WILD-TYPE 158  12  50
D67V8, multiclass
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  M0           44                158
  M1            4                 12
  MX           13                 50
                    vv
clus                   I  II III  IV
  15Q LOSS CNV        31  15  13   4
  15Q LOSS WILD-TYPE 118  46  44  12
D67V9, multiclass
     clus
vv    15Q LOSS CNV 15Q LOSS WILD-TYPE
  I             31                118
  II            15                 46
  III           13                 44
  IV             4                 12
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          5   76
  15Q LOSS WILD-TYPE   15  293
     clus
vv    15Q LOSS CNV 15Q LOSS WILD-TYPE
  NO             5                 15
  YES           76                293
D67V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q LOSS CNV                                                19
  15Q LOSS WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q LOSS CNV                                           15             20
  15Q LOSS WILD-TYPE                                     62             42
                    vv
clus                 LIFELONG NON-SMOKER
  15Q LOSS CNV                         9
  15Q LOSS WILD-TYPE                  27
D67V12, multiclass
                                             clus
vv                                            15Q LOSS CNV 15Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           19                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                15                 62
  CURRENT SMOKER                                        20                 42
  LIFELONG NON-SMOKER                                    9                 27
D67V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS CNV        51   4   1   2
  15Q LOSS WILD-TYPE 182   5   3  12
D67V14, multiclass
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  R0           51                182
  R1            4                  5
  R2            1                  3
  RX            2                 12

Clustering(68) Variable = 16p loss
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS CNV        18  11
  16P LOSS WILD-TYPE 246  74
      16P LOSS CNV 16P LOSS WILD-TYPE 
                29                320 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                11                 74 
$`16P LOSS CNV`
TCGA-05-4396 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-44-5643 TCGA-44-7660 
        9.96         8.02        29.95        26.01         3.48         5.33 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 
        8.52         3.22        28.57        12.13         8.45         3.88 
TCGA-53-7624 TCGA-55-5899 TCGA-55-6968 TCGA-55-8094 TCGA-62-A470 TCGA-67-3770 
       35.11         2.86        42.48         0.13        39.22         0.99 
TCGA-73-4662 TCGA-78-7143 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-86-8054 
       29.95       163.10        88.11        31.20         8.02         0.62 
TCGA-91-6847 TCGA-95-7567 TCGA-97-7937 TCGA-97-8171 TCGA-L4-A4E5 
       26.93         5.36         5.95         3.48         6.97 

$`16P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       47.05        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       13.74        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.46         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15         0.36         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         0.07         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 
        3.72         9.44         9.27         7.82         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      16P LOSS CNV 16P LOSS WILD-TYPE 
              0.13               0.03 
      16P LOSS CNV 16P LOSS WILD-TYPE 
            163.10             223.96 
      16P LOSS CNV 16P LOSS WILD-TYPE 
             8.450              7.935 
[1] "0.1 - 163.1 (8.4)" "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "16P LOSS CNV"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV         13   18
  16P LOSS WILD-TYPE  198  160
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  FEMALE           13                198
  MALE             18                160
D68V4, continuous
[1] "Remove cluster labels:" "16P LOSS CNV"          
clus
      16P LOSS CNV 16P LOSS WILD-TYPE 
                 1                 28 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-91-6849         TCGA-93-7348 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-7458 
"16P LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P LOSS CNV                                2
  16P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P LOSS CNV                                       5
  16P LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS CNV                                                       18
  16P LOSS WILD-TYPE                                                225
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P LOSS CNV                                                0
  16P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P LOSS CNV                                                   1
  16P LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P LOSS CNV                                    1
  16P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P LOSS CNV                                        1
  16P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P LOSS CNV                                  0                             2
  16P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P LOSS CNV                                                   0
  16P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16P LOSS CNV                                       1
  16P LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16P LOSS CNV                                  0
  16P LOSS WILD-TYPE                            3
D68V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS CNV         6  16   1   1
  16P LOSS WILD-TYPE  74 153  21  15
D68V6, multiclass
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  T1            6                 74
  T2           16                153
  T3            1                 21
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  16P LOSS CNV        15   4     4
  16P LOSS WILD-TYPE 157  54    48
D68V7, multiclass
       clus
vv      16P LOSS CNV 16P LOSS WILD-TYPE
  N0              15                157
  N1               4                 54
  N2+N3            4                 48
                    vv
clus                  M0  M1  MX
  16P LOSS CNV        13   5   6
  16P LOSS WILD-TYPE 189  11  57
D68V8, multiclass
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  M0           13                189
  M1            5                 11
  MX            6                 57
                    vv
clus                   I  II III  IV
  16P LOSS CNV        13   2   5   4
  16P LOSS WILD-TYPE 136  59  52  12
D68V9, multiclass
     clus
vv    16P LOSS CNV 16P LOSS WILD-TYPE
  I             13                136
  II             2                 59
  III            5                 52
  IV             4                 12
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          3   28
  16P LOSS WILD-TYPE   17  341
     clus
vv    16P LOSS CNV 16P LOSS WILD-TYPE
  NO             3                 17
  YES           28                341
D68V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P LOSS CNV                                                 4
  16P LOSS WILD-TYPE                                          96
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P LOSS CNV                                            7              9
  16P LOSS WILD-TYPE                                     70             53
                    vv
clus                 LIFELONG NON-SMOKER
  16P LOSS CNV                         3
  16P LOSS WILD-TYPE                  33
D68V12, multiclass
                                             clus
vv                                            16P LOSS CNV 16P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4                 96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 7                 70
  CURRENT SMOKER                                         9                 53
  LIFELONG NON-SMOKER                                    3                 33
D68V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS CNV        18   0   1   0
  16P LOSS WILD-TYPE 215   9   3  14
D68V14, multiclass
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  R0           18                215
  R1            0                  9
  R2            1                  3
  RX            0                 14

Clustering(69) Variable = 16q loss
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS CNV        36  12
  16Q LOSS WILD-TYPE 228  73
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                48                301 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                12                 73 
$`16Q LOSS CNV`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        8.02        20.05        29.95        26.01        25.02         5.95 
TCGA-38-4625 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 
       47.61         6.21         4.60         3.48        16.37         5.33 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 
        8.52         3.22        28.57        12.13         8.45         3.88 
TCGA-53-7624 TCGA-55-1595 TCGA-55-5899 TCGA-55-6968 TCGA-55-7281 TCGA-62-A46O 
       35.11        48.62         2.86        42.48         0.59        47.77 
TCGA-62-A470 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 TCGA-69-7979 TCGA-73-4662 
       39.22        83.84        30.44         0.99         2.93        29.95 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7152 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      163.10         5.65        39.48        88.11        31.20         8.02 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-91-6847 TCGA-91-7771 
        0.89         0.23         1.12         0.62        26.93         1.02 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7937 TCGA-97-8171 TCGA-L4-A4E5 TCGA-L9-A443 
        5.36        31.66         5.95         3.48         6.97         3.81 

$`16Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03        47.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 
        8.09        10.22         8.32         6.44         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        38.73        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 
        0.16         5.29        68.81        19.53        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       20.65        39.09        55.40        37.02        44.38         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        1.25        20.42        17.06        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
        8.48        26.53        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 
       32.68        13.81         0.36         0.46         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 
        9.76         4.18         6.08         1.12         0.07         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        1.32         4.34        47.18        48.53        43.76         8.65 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 
        3.72         9.44         9.27         7.82         2.50         0.20 
TCGA-MN-A4N4 
       20.42 

      16Q LOSS CNV 16Q LOSS WILD-TYPE 
              0.23               0.03 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
            163.10             223.96 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             8.235              8.050 
[1] "0.2 - 163.1 (8.2)" "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
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"16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV         26   25
  16Q LOSS WILD-TYPE  185  153
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  FEMALE           26                185
  MALE             25                153
D69V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q LOSS CNV                                4
  16Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q LOSS CNV                                       9
  16Q LOSS WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS CNV                                                       29
  16Q LOSS WILD-TYPE                                                214
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q LOSS CNV                                                0
  16Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q LOSS CNV                                                   3
  16Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q LOSS CNV                                    2
  16Q LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q LOSS CNV                                        1
  16Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q LOSS CNV                                  0                             2
  16Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q LOSS CNV                                                   0
  16Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16Q LOSS CNV                                       1
  16Q LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16Q LOSS CNV                                  0
  16Q LOSS WILD-TYPE                            3
D69V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS CNV        12  28   1   0
  16Q LOSS WILD-TYPE  68 141  21  16
D69V6, multiclass
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  T1           12                 68
  T2           28                141
  T3            1                 21
  T4            0                 16
                    vv
clus                  N0  N1 N2+N3
  16Q LOSS CNV        28   6     6
  16Q LOSS WILD-TYPE 144  52    46
D69V7, multiclass
       clus
vv      16Q LOSS CNV 16Q LOSS WILD-TYPE
  N0              28                144
  N1               6                 52
  N2+N3            6                 46
                    vv
clus                  M0  M1  MX
  16Q LOSS CNV        27   5   7
  16Q LOSS WILD-TYPE 175  11  56
D69V8, multiclass
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  M0           27                175
  M1            5                 11
  MX            7                 56
                    vv
clus                   I  II III  IV
  16Q LOSS CNV        25   5   6   4
  16Q LOSS WILD-TYPE 124  56  51  12
D69V9, multiclass
     clus
vv    16Q LOSS CNV 16Q LOSS WILD-TYPE
  I             25                124
  II             5                 56
  III            6                 51
  IV             4                 12
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          3   48
  16Q LOSS WILD-TYPE   17  321
     clus
vv    16Q LOSS CNV 16Q LOSS WILD-TYPE
  NO             3                 17
  YES           48                321
D69V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q LOSS CNV                                                13
  16Q LOSS WILD-TYPE                                          87
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q LOSS CNV                                            9             13
  16Q LOSS WILD-TYPE                                     68             49
                    vv
clus                 LIFELONG NON-SMOKER
  16Q LOSS CNV                         5
  16Q LOSS WILD-TYPE                  31
D69V12, multiclass
                                             clus
vv                                            16Q LOSS CNV 16Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13                 87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9                 68
  CURRENT SMOKER                                        13                 49
  LIFELONG NON-SMOKER                                    5                 31
D69V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS CNV        31   0   1   1
  16Q LOSS WILD-TYPE 202   9   3  13
D69V14, multiclass
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  R0           31                202
  R1            0                  9
  R2            1                  3
  RX            1                 13

Clustering(70) Variable = 17p loss
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS CNV        62  20
  17P LOSS WILD-TYPE 202  65
      17P LOSS CNV 17P LOSS WILD-TYPE 
                82                267 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                20                 65 
$`17P LOSS CNV`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4420 TCGA-05-4426 TCGA-05-4433 
       38.07         9.96        24.03        29.95        26.01        24.00 
TCGA-05-5429 TCGA-35-4123 TCGA-38-4625 TCGA-44-2659 TCGA-44-2665 TCGA-44-3919 
        0.99         5.95        47.61        17.39        13.15         6.21 
TCGA-44-5643 TCGA-44-6779 TCGA-44-7660 TCGA-44-8117 TCGA-49-4488 TCGA-49-4505 
        3.48        16.41         5.33         8.52        28.57        14.07 
TCGA-49-4512 TCGA-50-5931 TCGA-50-5936 TCGA-50-5944 TCGA-50-6591 TCGA-50-6673 
       29.75         8.78         8.45        12.26         3.88         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6968 TCGA-55-6972 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
       45.17        42.48        48.49        32.71        24.99        40.54 
TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7910 
        0.13         1.32         1.02         1.02         0.62         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8097 TCGA-55-A48Y TCGA-55-A48Z TCGA-62-A46O 
        0.69         0.10         0.49         1.02         0.95        47.77 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 TCGA-64-5774 TCGA-64-5815 TCGA-67-3770 
       17.75        56.81        55.40        83.84         7.33         0.99 
TCGA-67-3773 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        2.04        13.87         5.06         6.12        13.61         4.24 
TCGA-69-7974 TCGA-78-7146 TCGA-78-7150 TCGA-78-7535 TCGA-78-7536 TCGA-78-7540 
        6.05         5.65        21.86        31.20         8.02        28.96 
TCGA-86-8278 TCGA-86-8358 TCGA-86-8668 TCGA-91-6831 TCGA-91-6847 TCGA-95-7039 
        0.76         0.62         1.45         1.28        26.93         1.12 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7554 TCGA-97-7938 TCGA-99-8025 TCGA-J2-8192 
        1.32         4.34         8.65         0.59        14.04         5.03 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-MN-A4N4 
        9.44         9.27         6.97        20.42 

$`17P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.46        17.59        13.74         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.09         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       15.12         9.37         4.44        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7813 TCGA-55-5899 
       11.05        12.16         6.21        33.37        13.74         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 
        3.88         5.46         7.76         2.20        45.34        60.03 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         0.59         1.12         3.12         1.28 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.79         1.78         0.53         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.85         0.13         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        2.14         3.45         1.08         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 
        0.16         5.29        68.81        19.53        39.22        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        44.38         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       39.52         1.97         0.59         0.59         0.89         0.69 
TCGA-69-7763 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
       22.68         7.56         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
        8.48        88.11        26.53        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 
        0.85         0.69         0.53         0.85         1.12         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
       41.33         0.03         1.15         0.36         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         6.08         0.07         5.36 
TCGA-95-7944 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        0.69        31.66        47.18        48.53        43.76         5.95 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AG 
        8.22        15.06         1.45         5.56         3.72         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        2.50         3.81         0.20 

      17P LOSS CNV 17P LOSS WILD-TYPE 
              0.10               0.03 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             83.84             223.96 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             8.715              7.760 
[1] "0.1 - 83.8 (8.7)"  "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "17P LOSS CNV"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
      "17P LOSS CNV" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
      "17P LOSS CNV" 
[1] "hr=" "1"  
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         55   42
  17P LOSS WILD-TYPE  156  136
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  FEMALE           55                156
  MALE             42                136
D70V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P LOSS CNV                                3
  17P LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P LOSS CNV                                      19
  17P LOSS WILD-TYPE                                60
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS CNV                                                       65
  17P LOSS WILD-TYPE                                                178
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P LOSS CNV                                                2
  17P LOSS WILD-TYPE                                          2
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P LOSS CNV                                                   2
  17P LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P LOSS CNV                                    1
  17P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P LOSS CNV                                        1
  17P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P LOSS CNV                                  0                             2
  17P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P LOSS CNV                                                   0
  17P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17P LOSS CNV                                       1
  17P LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17P LOSS CNV                                  1
  17P LOSS WILD-TYPE                            2
D70V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS CNV        24  45   4   3
  17P LOSS WILD-TYPE  56 124  18  13
D70V6, multiclass
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  T1           24                 56
  T2           45                124
  T3            4                 18
  T4            3                 13
                    vv
clus                  N0  N1 N2+N3
  17P LOSS CNV        47  17    12
  17P LOSS WILD-TYPE 125  41    40
D70V7, multiclass
       clus
vv      17P LOSS CNV 17P LOSS WILD-TYPE
  N0              47                125
  N1              17                 41
  N2+N3           12                 40
                    vv
clus                  M0  M1  MX
  17P LOSS CNV        52   4  20
  17P LOSS WILD-TYPE 150  12  43
D70V8, multiclass
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  M0           52                150
  M1            4                 12
  MX           20                 43
                    vv
clus                   I  II III  IV
  17P LOSS CNV        38  21  13   4
  17P LOSS WILD-TYPE 111  40  44  12
D70V9, multiclass
     clus
vv    17P LOSS CNV 17P LOSS WILD-TYPE
  I             38                111
  II            21                 40
  III           13                 44
  IV             4                 12
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV          3   94
  17P LOSS WILD-TYPE   17  275
     clus
vv    17P LOSS CNV 17P LOSS WILD-TYPE
  NO             3                 17
  YES           94                275
D70V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P LOSS CNV                                                14
  17P LOSS WILD-TYPE                                          86
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P LOSS CNV                                           24             22
  17P LOSS WILD-TYPE                                     53             40
                    vv
clus                 LIFELONG NON-SMOKER
  17P LOSS CNV                        12
  17P LOSS WILD-TYPE                  24
D70V12, multiclass
                                             clus
vv                                            17P LOSS CNV 17P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           14                 86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                24                 53
  CURRENT SMOKER                                        22                 40
  LIFELONG NON-SMOKER                                   12                 24
D70V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS CNV        65   1   0   1
  17P LOSS WILD-TYPE 168   8   4  13
D70V14, multiclass
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  R0           65                168
  R1            1                  8
  R2            0                  4
  RX            1                 13

Clustering(71) Variable = 17q loss
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS CNV         8   6
  17Q LOSS WILD-TYPE 256  79
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                14                335 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 6                 79 
$`17Q LOSS CNV`
TCGA-05-4396 TCGA-44-2665 TCGA-49-4488 TCGA-49-4512 TCGA-50-5931 TCGA-53-7624 
        9.96        13.15        28.57        29.75         8.78        35.11 
TCGA-55-6972 TCGA-69-7764 TCGA-78-7146 TCGA-78-7535 TCGA-95-7948 TCGA-J2-8192 
       48.49        13.61         5.65        31.20         4.34         5.03 
TCGA-J2-A4AD TCGA-L4-A4E5 
        9.44         6.97 

$`17Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        22.68         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
        0.23         1.12         0.46         0.62         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.49         0.33         0.99         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 
        0.07         5.36         0.69         1.32        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE 
       14.04        15.06         1.45         5.56         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         3.81         0.20        20.42 

      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              4.34               0.03 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
             48.49             223.96 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
            11.555              7.820 
[1] "4.3 - 48.5 (11.6)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV         11    5
  17Q LOSS WILD-TYPE  200  173
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  FEMALE           11                200
  MALE              5                173
D71V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q LOSS CNV                                0
  17Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q LOSS CNV                                       4
  17Q LOSS WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS CNV                                                       10
  17Q LOSS WILD-TYPE                                                233
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q LOSS CNV                                                0
  17Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q LOSS CNV                                                   0
  17Q LOSS WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q LOSS CNV                                    0
  17Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q LOSS CNV                                        1
  17Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q LOSS CNV                                  0                             1
  17Q LOSS WILD-TYPE                            2                            17
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q LOSS CNV                                                   0
  17Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17Q LOSS CNV                                       0
  17Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17Q LOSS CNV                                  0
  17Q LOSS WILD-TYPE                            3
D71V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS CNV         2   9   0   1
  17Q LOSS WILD-TYPE  78 160  22  15
D71V6, multiclass
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  T1            2                 78
  T2            9                160
  T3            0                 22
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  17Q LOSS CNV         6   3     3
  17Q LOSS WILD-TYPE 166  55    49
D71V7, multiclass
       clus
vv      17Q LOSS CNV 17Q LOSS WILD-TYPE
  N0               6                166
  N1               3                 55
  N2+N3            3                 49
                    vv
clus                  M0  M1  MX
  17Q LOSS CNV         9   1   2
  17Q LOSS WILD-TYPE 193  15  61
D71V8, multiclass
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  M0            9                193
  M1            1                 15
  MX            2                 61
                    vv
clus                   I  II III  IV
  17Q LOSS CNV         5   2   4   1
  17Q LOSS WILD-TYPE 144  59  53  15
D71V9, multiclass
     clus
vv    17Q LOSS CNV 17Q LOSS WILD-TYPE
  I              5                144
  II             2                 59
  III            4                 53
  IV             1                 15
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          0   16
  17Q LOSS WILD-TYPE   20  353
     clus
vv    17Q LOSS CNV 17Q LOSS WILD-TYPE
  NO             0                 20
  YES           16                353
D71V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q LOSS CNV                                                 1
  17Q LOSS WILD-TYPE                                          99
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q LOSS CNV                                            4              3
  17Q LOSS WILD-TYPE                                     73             59
                    vv
clus                 LIFELONG NON-SMOKER
  17Q LOSS CNV                         3
  17Q LOSS WILD-TYPE                  33
D71V12, multiclass
                                             clus
vv                                            17Q LOSS CNV 17Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1                 99
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4                 73
  CURRENT SMOKER                                         3                 59
  LIFELONG NON-SMOKER                                    3                 33
D71V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS CNV        10   0   0   1
  17Q LOSS WILD-TYPE 223   9   4  13
D71V14, multiclass
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  R0           10                223
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(72) Variable = 18p loss
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS CNV        41  14
  18P LOSS WILD-TYPE 223  71
      18P LOSS CNV 18P LOSS WILD-TYPE 
                55                294 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                14                 71 
$`18P LOSS CNV`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4426 TCGA-05-5425 TCGA-05-5715 TCGA-35-5375 
        3.98        37.02        26.01         2.96         2.04         8.68 
TCGA-38-4632 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 TCGA-44-A4SU TCGA-49-4488 
       44.61        16.41        18.87        17.46         2.50        28.57 
TCGA-49-4505 TCGA-49-4512 TCGA-50-5936 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 
       14.07        29.75         8.45        33.37        35.11        38.73 
TCGA-55-1596 TCGA-55-6972 TCGA-55-6975 TCGA-55-7281 TCGA-55-7283 TCGA-55-7726 
       45.17        48.49         3.88         0.59         1.12         1.02 
TCGA-55-7728 TCGA-55-7910 TCGA-55-8087 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        0.79         6.48         0.69         0.95         1.58         0.03 
TCGA-62-A46O TCGA-62-A470 TCGA-62-A472 TCGA-67-3770 TCGA-67-6216 TCGA-69-7765 
       47.77        39.22        17.75         0.99         0.69         4.24 
TCGA-69-7979 TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7146 TCGA-78-7167 
        2.93        20.28         0.46        17.06         5.65        88.11 
TCGA-78-7535 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-91-6836 
       31.20         0.76         0.69         0.53         0.62         0.36 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-97-7937 TCGA-97-7941 TCGA-J2-8192 
        1.12         5.36         4.34         5.95         0.72         5.03 
TCGA-L4-A4E5 
        6.97 

$`18P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         4.96         0.99         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       11.64         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       17.59        13.74         8.52         3.22         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
        8.09         4.44         3.75        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       35.54        46.72        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 
        8.38        31.89        13.74        23.05        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        0.92         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 
       60.03        24.99        40.54        71.05        38.47         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 
        3.12         1.32         1.28         1.02         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.53         0.69         0.10         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A493 TCGA-55-A494 
        2.14         3.45         1.08         1.02         0.92         0.16 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        5.29        68.81        19.53        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       13.61         7.56         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 
       15.35         1.32         4.01         1.25        20.42       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       13.81         0.36         0.89         0.23         1.12         0.46 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.62         0.33         0.43         0.79         1.41         0.85 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         4.18         6.08         0.07         0.69         1.32 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
       31.66        47.18        48.53        43.76         8.65         0.59 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD 
       14.04        15.06         1.45         5.56         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        9.27         7.82         2.50         3.81         0.20        20.42 

      18P LOSS CNV 18P LOSS WILD-TYPE 
              0.03               0.03 
      18P LOSS CNV 18P LOSS WILD-TYPE 
             88.11             223.96 
      18P LOSS CNV 18P LOSS WILD-TYPE 
              5.36               8.35 
[1] "0.0 - 88.1 (5.4)"  "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "18P LOSS CNV" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV         42   25
  18P LOSS WILD-TYPE  169  153
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  FEMALE           42                169
  MALE             25                153
D72V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P LOSS CNV                                3
  18P LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P LOSS CNV                                      15
  18P LOSS WILD-TYPE                                64
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS CNV                                                       39
  18P LOSS WILD-TYPE                                                204
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P LOSS CNV                                                0
  18P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P LOSS CNV                                                   3
  18P LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P LOSS CNV                                    0
  18P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P LOSS CNV                                        2
  18P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P LOSS CNV                                  0                             2
  18P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P LOSS CNV                                                   0
  18P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18P LOSS CNV                                       2
  18P LOSS WILD-TYPE                                 2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18P LOSS CNV                                  1
  18P LOSS WILD-TYPE                            2
D72V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS CNV         8  33   4   2
  18P LOSS WILD-TYPE  72 136  18  14
D72V6, multiclass
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  T1            8                 72
  T2           33                136
  T3            4                 18
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  18P LOSS CNV        25  12    10
  18P LOSS WILD-TYPE 147  46    42
D72V7, multiclass
       clus
vv      18P LOSS CNV 18P LOSS WILD-TYPE
  N0              25                147
  N1              12                 46
  N2+N3           10                 42
                    vv
clus                  M0  M1  MX
  18P LOSS CNV        28   6  11
  18P LOSS WILD-TYPE 174  10  52
D72V8, multiclass
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  M0           28                174
  M1            6                 10
  MX           11                 52
                    vv
clus                   I  II III  IV
  18P LOSS CNV        16  12  10   7
  18P LOSS WILD-TYPE 133  49  47   9
D72V9, multiclass
     clus
vv    18P LOSS CNV 18P LOSS WILD-TYPE
  I             16                133
  II            12                 49
  III           10                 47
  IV             7                  9
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          1   66
  18P LOSS WILD-TYPE   19  303
     clus
vv    18P LOSS CNV 18P LOSS WILD-TYPE
  NO             1                 19
  YES           66                303
D72V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P LOSS CNV                                                15
  18P LOSS WILD-TYPE                                          85
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P LOSS CNV                                           11             14
  18P LOSS WILD-TYPE                                     66             48
                    vv
clus                 LIFELONG NON-SMOKER
  18P LOSS CNV                         6
  18P LOSS WILD-TYPE                  30
D72V12, multiclass
                                             clus
vv                                            18P LOSS CNV 18P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           15                 85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                11                 66
  CURRENT SMOKER                                        14                 48
  LIFELONG NON-SMOKER                                    6                 30
D72V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS CNV        46   1   1   0
  18P LOSS WILD-TYPE 187   8   3  14
D72V14, multiclass
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  R0           46                187
  R1            1                  8
  R2            1                  3
  RX            0                 14

Clustering(73) Variable = 18q loss
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS CNV        58  21
  18Q LOSS WILD-TYPE 206  64
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                79                270 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                21                 64 
$`18Q LOSS CNV`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 
        3.98         8.02        20.05        26.01        26.01        24.00 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-5375 TCGA-38-4631 
        4.96         2.96         0.99         2.04         8.68        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-6146 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 
       44.61         5.19         9.93        16.41        18.87        17.46 
TCGA-44-A4SU TCGA-49-4488 TCGA-49-4505 TCGA-49-4512 TCGA-50-5936 TCGA-50-5946 
        2.50        28.57        14.07        29.75         8.45        11.47 
TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-6972 
       12.16        33.37        35.11        38.73        45.17        48.49 
TCGA-55-6975 TCGA-55-6980 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 
        3.88         2.20         0.59         1.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 TCGA-55-8087 TCGA-55-8094 TCGA-55-A48Z 
        1.02         0.79         6.48         0.69         0.13         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-62-A46O TCGA-62-A470 TCGA-62-A472 TCGA-64-5775 
        1.58         0.03        47.77        39.22        17.75         0.10 
TCGA-64-5778 TCGA-67-3770 TCGA-67-6216 TCGA-69-7760 TCGA-69-7765 TCGA-69-7979 
       30.44         0.99         0.69         5.06         4.24         2.93 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.28         0.46        17.06        27.16         5.65        19.27 
TCGA-78-7150 TCGA-78-7161 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-86-7711 
       21.86         7.04        31.20         8.02        10.75         0.89 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-91-6836 TCGA-95-7567 TCGA-95-7947 
        0.76         0.69         0.53         0.36         5.36         1.32 
TCGA-97-7547 TCGA-97-7937 TCGA-97-7941 TCGA-97-8177 TCGA-J2-8192 TCGA-L4-A4E5 
       47.18         5.95         0.72         4.80         5.03         6.97 
TCGA-MN-A4N4 
       20.42 

$`18Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       47.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-35-3615 TCGA-35-4122 
       25.02        25.02        15.02         1.02         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
       16.37         6.84         0.30         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 
        5.33         5.03         1.64        18.31        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.75        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        6.21         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 
       40.70        15.25         0.92         5.46         7.76        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        0.13         3.12         1.02         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.69         0.10         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.08         1.02         0.92         0.16         5.29        68.81 
TCGA-62-A46P TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       19.53        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       44.38        83.84        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 
        0.59         2.04         0.59         0.89        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68        13.61         7.56         6.05         2.30        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         1.32         4.01         1.25        20.42 
TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
      163.10        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 
       38.50        32.09         5.88        40.11        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 
      223.96         8.48        88.11        26.53        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       10.55        32.68        13.81         0.36         0.23         1.12 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.46         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.85         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         0.03         1.28         1.15        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.07         0.69         4.34        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8179 
        8.65         0.59         3.48         5.95         5.36         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 
        8.22        14.04        15.06         1.45         5.56         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         9.27         7.82         2.50         3.81         0.20 

      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              0.03               0.03 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
             48.49             223.96 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              6.48               8.35 
[1] "0.0 - 48.5 (6.5)"  "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
      "18Q LOSS CNV" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         55   40
  18Q LOSS WILD-TYPE  156  138
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  FEMALE           55                156
  MALE             40                138
D73V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q LOSS CNV                                4
  18Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q LOSS CNV                                      24
  18Q LOSS WILD-TYPE                                55
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS CNV                                                       54
  18Q LOSS WILD-TYPE                                                189
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q LOSS CNV                                                0
  18Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q LOSS CNV                                                   5
  18Q LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q LOSS CNV                                    0
  18Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q LOSS CNV                                        2
  18Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q LOSS CNV                                  1                             2
  18Q LOSS WILD-TYPE                            1                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q LOSS CNV                                                   0
  18Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18Q LOSS CNV                                       2
  18Q LOSS WILD-TYPE                                 2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18Q LOSS CNV                                  1
  18Q LOSS WILD-TYPE                            2
D73V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS CNV        13  48   8   4
  18Q LOSS WILD-TYPE  67 121  14  12
D73V6, multiclass
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  T1           13                 67
  T2           48                121
  T3            8                 14
  T4            4                 12
                    vv
clus                  N0  N1 N2+N3
  18Q LOSS CNV        39  19    14
  18Q LOSS WILD-TYPE 133  39    38
D73V7, multiclass
       clus
vv      18Q LOSS CNV 18Q LOSS WILD-TYPE
  N0              39                133
  N1              19                 39
  N2+N3           14                 38
                    vv
clus                  M0  M1  MX
  18Q LOSS CNV        48   7  15
  18Q LOSS WILD-TYPE 154   9  48
D73V8, multiclass
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  M0           48                154
  M1            7                  9
  MX           15                 48
                    vv
clus                   I  II III  IV
  18Q LOSS CNV        26  22  15   8
  18Q LOSS WILD-TYPE 123  39  42   8
D73V9, multiclass
     clus
vv    18Q LOSS CNV 18Q LOSS WILD-TYPE
  I             26                123
  II            22                 39
  III           15                 42
  IV             8                  8
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV          2   93
  18Q LOSS WILD-TYPE   18  276
     clus
vv    18Q LOSS CNV 18Q LOSS WILD-TYPE
  NO             2                 18
  YES           93                276
D73V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q LOSS CNV                                                25
  18Q LOSS WILD-TYPE                                          75
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q LOSS CNV                                           18             17
  18Q LOSS WILD-TYPE                                     59             45
                    vv
clus                 LIFELONG NON-SMOKER
  18Q LOSS CNV                        12
  18Q LOSS WILD-TYPE                  24
D73V12, multiclass
                                             clus
vv                                            18Q LOSS CNV 18Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           25                 75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                18                 59
  CURRENT SMOKER                                        17                 45
  LIFELONG NON-SMOKER                                   12                 24
D73V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS CNV        62   4   2   0
  18Q LOSS WILD-TYPE 171   5   2  14
D73V14, multiclass
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  R0           62                171
  R1            4                  5
  R2            2                  2
  RX            0                 14

Clustering(74) Variable = 19p loss
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS CNV        56  31
  19P LOSS WILD-TYPE 208  54
      19P LOSS CNV 19P LOSS WILD-TYPE 
                87                262 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                31                 54 
$`19P LOSS CNV`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 
        3.98        14.01         9.96         8.02         2.96        29.95 
TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 
       26.01        25.02        24.00        15.02         5.95        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-44-2655 TCGA-44-5644 TCGA-44-6146 TCGA-44-6779 
       35.28        11.64        18.87        16.37         9.93        16.41 
TCGA-44-7669 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4505 
       18.87        17.59         8.52         3.22        76.21        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-50-5051 TCGA-50-5931 TCGA-50-5932 
        8.81        29.46        15.02        14.96         8.78        35.87 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 
        8.45        12.26        33.37         8.38        13.74        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 
       38.73        45.17         2.86        42.48        48.49         3.88 
TCGA-55-7576 TCGA-55-7910 TCGA-55-8092 TCGA-55-8094 TCGA-55-8512 TCGA-55-A494 
        1.32         6.48         0.85         0.13         0.10         0.16 
TCGA-62-A46O TCGA-62-A470 TCGA-64-1676 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 
       47.77        39.22        56.81        83.84        30.44         0.99 
TCGA-67-3774 TCGA-69-7764 TCGA-69-8255 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        0.59        13.61         4.21        20.28        15.35         0.46 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25        20.42        17.06         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7156 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       35.93        32.09         8.48        88.11        31.20         8.02 
TCGA-78-7539 TCGA-86-7713 TCGA-86-7955 TCGA-86-8075 TCGA-86-8280 TCGA-91-6836 
       10.75         0.23         0.46         1.41         0.53         0.36 
TCGA-91-6849 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-8171 
        0.92         1.12         0.07         5.36         4.34         3.48 
TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-L9-A443 
        9.44         6.97         3.81 

$`19P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 
       38.07        19.92        37.02        24.03        47.05        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5420 
       14.93         8.98        30.02        26.01        25.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 
        8.68        47.61        85.32        37.71        28.37        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30         4.37        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-A479 TCGA-44-A47A 
        1.64        18.31        17.46        13.74         8.38         6.64 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4487 TCGA-49-4488 
        8.09         4.44         3.75         2.50        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 
       12.66        35.54        46.72        32.84        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       77.88        21.47        15.12         9.37         4.44        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
        0.72        35.11        31.89        48.62         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 
        0.79        40.70        15.25         0.92         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.49         7.07         1.41         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
        5.29        68.81        19.53        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02        44.38         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        7.33         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        22.68         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        23.38        29.95         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
      163.10        27.16        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       38.50         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
      223.96        26.53        53.33        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
       13.81         0.36         0.89         1.12         0.62         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 
        0.43         0.79         0.85         0.76         0.69         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15        26.93         4.18         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 
        4.18         6.08         0.69         1.32        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         0.20        20.42 

      19P LOSS CNV 19P LOSS WILD-TYPE 
              0.07               0.03 
      19P LOSS CNV 19P LOSS WILD-TYPE 
             88.11             223.96 
      19P LOSS CNV 19P LOSS WILD-TYPE 
            11.640              6.905 
[1] "0.1 - 88.1 (11.6)" "0.0 - 224.0 (6.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "19P LOSS CNV"       "19P LOSS CNV"       "19P LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"19P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV         47   54
  19P LOSS WILD-TYPE  164  124
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  FEMALE           47                164
  MALE             54                124
D74V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P LOSS CNV                                2
  19P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P LOSS CNV                                      25
  19P LOSS WILD-TYPE                                54
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS CNV                                                       59
  19P LOSS WILD-TYPE                                                184
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P LOSS CNV                                                0
  19P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P LOSS CNV                                                   6
  19P LOSS WILD-TYPE                                            11
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P LOSS CNV                                    0
  19P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P LOSS CNV                                        1
  19P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P LOSS CNV                                  1                             4
  19P LOSS WILD-TYPE                            1                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P LOSS CNV                                                   1
  19P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19P LOSS CNV                                       2
  19P LOSS WILD-TYPE                                 2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19P LOSS CNV                                  0
  19P LOSS WILD-TYPE                            3
D74V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS CNV        16  51   5   7
  19P LOSS WILD-TYPE  64 118  17   9
D74V6, multiclass
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  T1           16                 64
  T2           51                118
  T3            5                 17
  T4            7                  9
                    vv
clus                  N0  N1 N2+N3
  19P LOSS CNV        46  23     9
  19P LOSS WILD-TYPE 126  35    43
D74V7, multiclass
       clus
vv      19P LOSS CNV 19P LOSS WILD-TYPE
  N0              46                126
  N1              23                 35
  N2+N3            9                 43
                    vv
clus                  M0  M1  MX
  19P LOSS CNV        58   7  12
  19P LOSS WILD-TYPE 144   9  51
D74V8, multiclass
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  M0           58                144
  M1            7                  9
  MX           12                 51
                    vv
clus                   I  II III  IV
  19P LOSS CNV        37  22  14   6
  19P LOSS WILD-TYPE 112  39  43  10
D74V9, multiclass
     clus
vv    19P LOSS CNV 19P LOSS WILD-TYPE
  I             37                112
  II            22                 39
  III           14                 43
  IV             6                 10
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          5   96
  19P LOSS WILD-TYPE   15  273
     clus
vv    19P LOSS CNV 19P LOSS WILD-TYPE
  NO             5                 15
  YES           96                273
D74V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P LOSS CNV                                                22
  19P LOSS WILD-TYPE                                          78
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P LOSS CNV                                           24             23
  19P LOSS WILD-TYPE                                     53             39
                    vv
clus                 LIFELONG NON-SMOKER
  19P LOSS CNV                         6
  19P LOSS WILD-TYPE                  30
D74V12, multiclass
                                             clus
vv                                            19P LOSS CNV 19P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           22                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                24                 53
  CURRENT SMOKER                                        23                 39
  LIFELONG NON-SMOKER                                    6                 30
D74V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS CNV        64   1   3   3
  19P LOSS WILD-TYPE 169   8   1  11
D74V14, multiclass
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  R0           64                169
  R1            1                  8
  R2            3                  1
  RX            3                 11

Clustering(75) Variable = 19q loss
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS CNV        29  21
  19Q LOSS WILD-TYPE 235  64
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                50                299 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                21                 64 
$`19Q LOSS CNV`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 TCGA-05-4434 
        3.98         9.96         8.02         2.96        29.95        15.02 
TCGA-38-4630 TCGA-44-2655 TCGA-44-5644 TCGA-44-6779 TCGA-44-7671 TCGA-44-8117 
       35.28        18.87        16.37        16.41        17.59         8.52 
TCGA-49-4486 TCGA-49-4505 TCGA-49-4507 TCGA-49-6742 TCGA-50-5051 TCGA-50-5932 
       76.21        14.07         8.81        15.02        14.96        35.87 
TCGA-50-5944 TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       12.26        33.37        23.05        45.17         2.86        42.48 
TCGA-55-6972 TCGA-55-6975 TCGA-62-A46O TCGA-62-A470 TCGA-64-1676 TCGA-67-3770 
       48.49         3.88        47.77        39.22        56.81         0.99 
TCGA-69-8255 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        4.21        20.28         0.46         1.25        20.42        17.06 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-86-7955 
        5.65        35.93        88.11        31.20         8.02         0.46 
TCGA-91-6836 TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-97-8171 
        0.36         0.92         1.12         5.36         4.34         3.48 
TCGA-J2-A4AD TCGA-L4-A4E5 
        9.44         6.97 

$`19Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       20.05        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30         4.37        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
       13.74         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.75         2.50        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       46.72        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       38.73        48.62         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       15.25         0.92         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        3.25         2.50         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
       15.35         1.32         4.01       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        1.12         0.62         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 
        1.12         1.45         1.08         0.56         0.49         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15        26.93         4.18         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 
        6.08         0.07         0.69         1.32        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         2.50         3.81         0.20        20.42 

      19Q LOSS CNV 19Q LOSS WILD-TYPE 
              0.36               0.03 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             88.11             223.96 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
            14.515              7.360 
[1] "0.4 - 88.1 (14.5)" "0.0 - 224.0 (7.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
      "19Q LOSS CNV"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"19Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV         30   28
  19Q LOSS WILD-TYPE  181  150
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  FEMALE           30                181
  MALE             28                150
D75V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q LOSS CNV                                2
  19Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q LOSS CNV                                      14
  19Q LOSS WILD-TYPE                                65
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS CNV                                                       33
  19Q LOSS WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q LOSS CNV                                                0
  19Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q LOSS CNV                                                   2
  19Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q LOSS CNV                                    0
  19Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q LOSS CNV                                        0
  19Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q LOSS CNV                                  0                             4
  19Q LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q LOSS CNV                                                   2
  19Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19Q LOSS CNV                                       1
  19Q LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19Q LOSS CNV                                  0
  19Q LOSS WILD-TYPE                            3
D75V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS CNV        10  26   4   5
  19Q LOSS WILD-TYPE  70 143  18  11
D75V6, multiclass
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  T1           10                 70
  T2           26                143
  T3            4                 18
  T4            5                 11
                    vv
clus                  N0  N1 N2+N3
  19Q LOSS CNV        25  13     6
  19Q LOSS WILD-TYPE 147  45    46
D75V7, multiclass
       clus
vv      19Q LOSS CNV 19Q LOSS WILD-TYPE
  N0              25                147
  N1              13                 45
  N2+N3            6                 46
                    vv
clus                  M0  M1  MX
  19Q LOSS CNV        28   6   9
  19Q LOSS WILD-TYPE 174  10  54
D75V8, multiclass
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  M0           28                174
  M1            6                 10
  MX            9                 54
                    vv
clus                   I  II III  IV
  19Q LOSS CNV        21   9  10   5
  19Q LOSS WILD-TYPE 128  52  47  11
D75V9, multiclass
     clus
vv    19Q LOSS CNV 19Q LOSS WILD-TYPE
  I             21                128
  II             9                 52
  III           10                 47
  IV             5                 11
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          4   54
  19Q LOSS WILD-TYPE   16  315
     clus
vv    19Q LOSS CNV 19Q LOSS WILD-TYPE
  NO             4                 16
  YES           54                315
D75V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q LOSS CNV                                                14
  19Q LOSS WILD-TYPE                                          86
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q LOSS CNV                                           10             15
  19Q LOSS WILD-TYPE                                     67             47
                    vv
clus                 LIFELONG NON-SMOKER
  19Q LOSS CNV                         4
  19Q LOSS WILD-TYPE                  32
D75V12, multiclass
                                             clus
vv                                            19Q LOSS CNV 19Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           14                 86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10                 67
  CURRENT SMOKER                                        15                 47
  LIFELONG NON-SMOKER                                    4                 32
D75V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS CNV        33   1   3   2
  19Q LOSS WILD-TYPE 200   8   1  12
D75V14, multiclass
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  R0           33                200
  R1            1                  8
  R2            3                  1
  RX            2                 12

Clustering(76) Variable = 20p loss
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS CNV        27  14
  20P LOSS WILD-TYPE 237  71
      20P LOSS CNV 20P LOSS WILD-TYPE 
                41                308 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                14                 71 
$`20P LOSS CNV`
TCGA-05-4405 TCGA-05-4415 TCGA-05-5423 TCGA-44-2665 TCGA-44-6779 TCGA-49-4505 
       20.05         2.96         4.96        13.15        16.41        14.07 
TCGA-50-5051 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-6594 
       14.96        77.88         8.45        15.12        12.26        12.16 
TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-6968 TCGA-55-6984 TCGA-55-7725 
       33.37        35.11        38.73        42.48        24.99         1.28 
TCGA-55-7903 TCGA-55-7907 TCGA-55-8092 TCGA-55-8616 TCGA-62-A46O TCGA-62-A46P 
        0.62         0.53         0.85         1.58        47.77        19.53 
TCGA-62-A472 TCGA-64-1678 TCGA-64-5781 TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 
       17.75        39.09        39.52         2.04         0.69         6.12 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 
       20.28         0.46        17.06        27.16         5.65        31.20 
TCGA-86-7953 TCGA-86-7955 TCGA-91-6828 TCGA-91-6848 TCGA-L9-A444 
        1.12         0.46         1.22         4.18         0.20 

$`20P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F 
       13.74         8.52         3.22         8.38         6.64         8.09 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.02         1.02         0.79         1.78 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A470 TCGA-64-1676 
        0.92         0.16         5.29        68.81        39.22        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89        13.87         5.06        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         1.32         4.01         1.25        20.42 
TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
      163.10        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 
       32.68        13.81         0.36         0.89         0.23         0.62 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.69         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 
        1.08         0.56         0.49         0.33         0.99         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-MN-A4N4 
        3.81        20.42 

      20P LOSS CNV 20P LOSS WILD-TYPE 
              0.20               0.03 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             77.88             223.96 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             13.15               7.79 
[1] "0.2 - 77.9 (13.2)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "20P LOSS CNV"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "20P LOSS CNV"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
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        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-MN-A4N4 
"20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "20P LOSS CNV"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
      "20P LOSS CNV"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"       "20P LOSS CNV"       "20P LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-MN-A4N4 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV         27   25
  20P LOSS WILD-TYPE  184  153
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  FEMALE           27                184
  MALE             25                153
D76V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P LOSS CNV                                2
  20P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P LOSS CNV                                      12
  20P LOSS WILD-TYPE                                67
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS CNV                                                       34
  20P LOSS WILD-TYPE                                                209
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P LOSS CNV                                                0
  20P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P LOSS CNV                                                   1
  20P LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P LOSS CNV                                    0
  20P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P LOSS CNV                                        1
  20P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P LOSS CNV                                  0                             0
  20P LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P LOSS CNV                                                   1
  20P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20P LOSS CNV                                       1
  20P LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20P LOSS CNV                                  0
  20P LOSS WILD-TYPE                            3
D76V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS CNV         9  29   1   4
  20P LOSS WILD-TYPE  71 140  21  12
D76V6, multiclass
    clus
vv   20P LOSS CNV 20P LOSS WILD-TYPE
  T1            9                 71
  T2           29                140
  T3            1                 21
  T4            4                 12
                    vv
clus                  N0  N1 N2+N3
  20P LOSS CNV        20  12    11
  20P LOSS WILD-TYPE 152  46    41
D76V7, multiclass
       clus
vv      20P LOSS CNV 20P LOSS WILD-TYPE
  N0              20                152
  N1              12                 46
  N2+N3           11                 41
                    vv
clus                  M0  M1  MX
  20P LOSS CNV        29   5   9
  20P LOSS WILD-TYPE 173  11  54
D76V8, multiclass
    clus
vv   20P LOSS CNV 20P LOSS WILD-TYPE
  M0           29                173
  M1            5                 11
  MX            9                 54
                    vv
clus                   I  II III  IV
  20P LOSS CNV        16  12  11   4
  20P LOSS WILD-TYPE 133  49  46  12
D76V9, multiclass
     clus
vv    20P LOSS CNV 20P LOSS WILD-TYPE
  I             16                133
  II            12                 49
  III           11                 46
  IV             4                 12
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          3   49
  20P LOSS WILD-TYPE   17  320
     clus
vv    20P LOSS CNV 20P LOSS WILD-TYPE
  NO             3                 17
  YES           49                320
D76V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P LOSS CNV                                                14
  20P LOSS WILD-TYPE                                          86
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P LOSS CNV                                           12              7
  20P LOSS WILD-TYPE                                     65             55
                    vv
clus                 LIFELONG NON-SMOKER
  20P LOSS CNV                         6
  20P LOSS WILD-TYPE                  30
D76V12, multiclass
                                             clus
vv                                            20P LOSS CNV 20P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           14                 86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                12                 65
  CURRENT SMOKER                                         7                 55
  LIFELONG NON-SMOKER                                    6                 30
D76V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS CNV        35   1   0   2
  20P LOSS WILD-TYPE 198   8   4  12
D76V14, multiclass
    clus
vv   20P LOSS CNV 20P LOSS WILD-TYPE
  R0           35                198
  R1            1                  8
  R2            0                  4
  RX            2                 12

Clustering(77) Variable = 20q loss
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS CNV        11   6
  20Q LOSS WILD-TYPE 253  79
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                17                332 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 6                 79 
$`20Q LOSS CNV`
TCGA-05-4405 TCGA-05-4415 TCGA-50-5051 TCGA-50-5936 TCGA-53-7624 TCGA-55-8087 
       20.05         2.96        14.96         8.45        35.11         0.69 
TCGA-55-8097 TCGA-62-A46O TCGA-62-A46P TCGA-64-1678 TCGA-67-3773 TCGA-67-6216 
        0.49        47.77        19.53        39.09         2.04         0.69 
TCGA-73-4675 TCGA-78-7146 TCGA-78-7537 TCGA-86-7953 TCGA-91-6828 
        1.32         5.65        53.33         1.12         1.22 

$`20Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
        8.38         6.64         8.09         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.13         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       68.81        39.22        17.75        56.81        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       39.52         7.33         0.99         1.97         0.59         0.59 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
        0.89         0.23         0.46         0.62         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 
        0.49         0.33         0.99         1.28        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        3.48         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 
        0.20        20.42 

      20Q LOSS CNV 20Q LOSS WILD-TYPE 
              0.49               0.03 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
             53.33             223.96 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
              5.65               8.07 
[1] "0.5 - 53.3 (5.7)"  "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "20Q LOSS CNV"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
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        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"20Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
      "20Q LOSS CNV"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-A456 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-A4D0         TCGA-86-A4P8         TCGA-91-6828 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6847 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV         12    9
  20Q LOSS WILD-TYPE  199  169
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  FEMALE           12                199
  MALE              9                169
D77V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q LOSS CNV                                0
  20Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q LOSS CNV                                       7
  20Q LOSS WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS CNV                                                       11
  20Q LOSS WILD-TYPE                                                232
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q LOSS CNV                                                0
  20Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q LOSS CNV                                                   1
  20Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q LOSS CNV                                    0
  20Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q LOSS CNV                                        1
  20Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q LOSS CNV                                  0                             0
  20Q LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q LOSS CNV                                                   0
  20Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20Q LOSS CNV                                       1
  20Q LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20Q LOSS CNV                                  0
  20Q LOSS WILD-TYPE                            3
D77V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS CNV         3  11   1   1
  20Q LOSS WILD-TYPE  77 158  21  15
D77V6, multiclass
    clus
vv   20Q LOSS CNV 20Q LOSS WILD-TYPE
  T1            3                 77
  T2           11                158
  T3            1                 21
  T4            1                 15
                    vv
clus                  N0  N1 N2+N3
  20Q LOSS CNV         9   3     4
  20Q LOSS WILD-TYPE 163  55    48
D77V7, multiclass
       clus
vv      20Q LOSS CNV 20Q LOSS WILD-TYPE
  N0               9                163
  N1               3                 55
  N2+N3            4                 48
                    vv
clus                  M0  M1  MX
  20Q LOSS CNV        14   1   1
  20Q LOSS WILD-TYPE 188  15  62
D77V8, multiclass
    clus
vv   20Q LOSS CNV 20Q LOSS WILD-TYPE
  M0           14                188
  M1            1                 15
  MX            1                 62
                    vv
clus                   I  II III  IV
  20Q LOSS CNV         7   3   5   1
  20Q LOSS WILD-TYPE 142  58  52  15
D77V9, multiclass
     clus
vv    20Q LOSS CNV 20Q LOSS WILD-TYPE
  I              7                142
  II             3                 58
  III            5                 52
  IV             1                 15
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          1   20
  20Q LOSS WILD-TYPE   19  349
     clus
vv    20Q LOSS CNV 20Q LOSS WILD-TYPE
  NO             1                 19
  YES           20                349
D77V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q LOSS CNV                                                 6
  20Q LOSS WILD-TYPE                                          94
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q LOSS CNV                                            6              1
  20Q LOSS WILD-TYPE                                     71             61
                    vv
clus                 LIFELONG NON-SMOKER
  20Q LOSS CNV                         2
  20Q LOSS WILD-TYPE                  34
D77V12, multiclass
                                             clus
vv                                            20Q LOSS CNV 20Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6                 94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6                 71
  CURRENT SMOKER                                         1                 61
  LIFELONG NON-SMOKER                                    2                 34
D77V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS CNV        16   0   0   2
  20Q LOSS WILD-TYPE 217   9   4  12
D77V14, multiclass
    clus
vv   20Q LOSS CNV 20Q LOSS WILD-TYPE
  R0           16                217
  R1            0                  9
  R2            0                  4
  RX            2                 12

Clustering(78) Variable = 21q loss
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS CNV        34  14
  21Q LOSS WILD-TYPE 230  71
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                48                301 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                14                 71 
$`21Q LOSS CNV`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4432 TCGA-44-5643 TCGA-44-5644 
        9.96        14.93        29.95        25.02         3.48        16.37 
TCGA-44-6779 TCGA-44-7660 TCGA-44-A47F TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 
       16.41         5.33         8.09        14.96        35.87        21.47 
TCGA-50-5944 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6968 
       12.26         8.38        23.05        38.73         2.86        42.48 
TCGA-55-6972 TCGA-55-7910 TCGA-55-8092 TCGA-55-8514 TCGA-55-A490 TCGA-62-A470 
       48.49         6.48         0.85         6.97         1.58        39.22 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-69-7760 TCGA-69-7980 TCGA-69-8255 
       55.40        83.84         0.10         5.06        12.56         4.21 
TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7153 
       23.38        15.35         0.46         5.65        20.58        24.99 
TCGA-78-7154 TCGA-78-7167 TCGA-78-7536 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       19.50        88.11         8.02         0.23         1.12         0.62 
TCGA-86-8669 TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 TCGA-99-8025 TCGA-J2-A4AE 
        1.08         1.02         0.07        47.18        14.04         9.27 

$`21Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       32.45        36.49         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        8.38         6.64         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        77.88         8.45        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       48.62        45.17         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.16         5.29        68.81        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 
       56.81        20.65        39.09        37.02        44.38        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        2.93         3.25         2.50         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
      163.10        27.16        19.27        35.93        21.86        39.48 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      104.15       223.96         8.48        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
        0.89         0.46         0.33         0.43         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.85         0.76         0.69         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 
        1.12         1.45         0.56         0.49         0.33         0.99 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        0.36        26.93         4.18         0.92         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.22        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N4 
       20.42 

      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              0.07               0.03 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             88.11             223.96 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             12.41               7.56 
[1] "0.1 - 88.1 (12.4)" "0.0 - 224.0 (7.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         21   33
  21Q LOSS WILD-TYPE  190  145
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  FEMALE           21                190
  MALE             33                145
D78V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q LOSS CNV                                4
  21Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q LOSS CNV                                      11
  21Q LOSS WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS CNV                                                       33
  21Q LOSS WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q LOSS CNV                                                0
  21Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q LOSS CNV                                                   1
  21Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q LOSS CNV                                    0
  21Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q LOSS CNV                                        1
  21Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q LOSS CNV                                  0                             3
  21Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q LOSS CNV                                                   1
  21Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  21Q LOSS CNV                                       0
  21Q LOSS WILD-TYPE                                 4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  21Q LOSS CNV                                  0
  21Q LOSS WILD-TYPE                            3
D78V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS CNV        10  26   3   3
  21Q LOSS WILD-TYPE  70 143  19  13
D78V6, multiclass
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  T1           10                 70
  T2           26                143
  T3            3                 19
  T4            3                 13
                    vv
clus                  N0  N1 N2+N3
  21Q LOSS CNV        26   7     9
  21Q LOSS WILD-TYPE 146  51    43
D78V7, multiclass
       clus
vv      21Q LOSS CNV 21Q LOSS WILD-TYPE
  N0              26                146
  N1               7                 51
  N2+N3            9                 43
                    vv
clus                  M0  M1  MX
  21Q LOSS CNV        30   3   8
  21Q LOSS WILD-TYPE 172  13  55
D78V8, multiclass
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  M0           30                172
  M1            3                 13
  MX            8                 55
                    vv
clus                   I  II III  IV
  21Q LOSS CNV        21   8  11   2
  21Q LOSS WILD-TYPE 128  53  46  14
D78V9, multiclass
     clus
vv    21Q LOSS CNV 21Q LOSS WILD-TYPE
  I             21                128
  II             8                 53
  III           11                 46
  IV             2                 14
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV          4   50
  21Q LOSS WILD-TYPE   16  319
     clus
vv    21Q LOSS CNV 21Q LOSS WILD-TYPE
  NO             4                 16
  YES           50                319
D78V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q LOSS CNV                                                14
  21Q LOSS WILD-TYPE                                          86
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q LOSS CNV                                            6             16
  21Q LOSS WILD-TYPE                                     71             46
                    vv
clus                 LIFELONG NON-SMOKER
  21Q LOSS CNV                         3
  21Q LOSS WILD-TYPE                  33
D78V12, multiclass
                                             clus
vv                                            21Q LOSS CNV 21Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           14                 86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6                 71
  CURRENT SMOKER                                        16                 46
  LIFELONG NON-SMOKER                                    3                 33
D78V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS CNV        34   0   0   1
  21Q LOSS WILD-TYPE 199   9   4  13
D78V14, multiclass
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  R0           34                199
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(79) Variable = 22q loss
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS CNV        46  23
  22Q LOSS WILD-TYPE 218  62
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                69                280 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                23                 62 
$`22Q LOSS CNV`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
        9.96        24.03         8.98        26.01        25.02        24.00 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4628 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        5.95         8.68        49.02         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6778 TCGA-44-8117 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       16.37        36.49         8.52        46.72        14.07         8.81 
TCGA-49-4510 TCGA-50-5051 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       29.46        14.96         9.27        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-6591 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       15.12         3.88        33.37         0.72         8.38        35.11 
TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 TCGA-55-7903 TCGA-55-7910 TCGA-55-8094 
        2.86        42.48        48.49         0.62         6.48         0.13 
TCGA-55-8512 TCGA-55-A490 TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 
        0.10         1.58        17.75        56.81        55.40        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-69-7760 TCGA-69-7764 TCGA-69-7979 
       83.84        30.44        16.67         5.06        13.61         2.93 
TCGA-69-8253 TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-78-7146 TCGA-78-7159 
        3.25        29.95        15.35         1.25         5.65        40.11 
TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-86-7711 TCGA-86-7953 
      223.96        88.11        31.20         8.02         0.89         1.12 
TCGA-86-8054 TCGA-86-8358 TCGA-86-A4D0 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        0.62         0.62         0.99        41.33         1.28         0.36 
TCGA-95-7039 TCGA-95-7567 TCGA-L4-A4E5 
        1.12         5.36         6.97 

$`22Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 
        0.99         2.04         0.46         7.36        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.87        17.46        17.59        13.74         3.22         8.38 
TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        6.64         8.09         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4506 TCGA-49-4512 
       28.11        28.57        12.66        35.54        32.84        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
        8.05         8.78        77.88         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         1.78         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 
        0.69         3.02         0.20         0.85         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        1.41         7.46         0.30         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.95         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       47.77        19.53        39.22        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68         4.24         7.56         6.05         2.30        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        2.50         4.21         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         1.32         4.01        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       24.99        19.50        38.50        32.09         5.88        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
        7.04       104.15         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
       28.96        10.55        32.68        13.81         0.36         0.23 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.46         0.33         0.43         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
        0.76         0.69         0.53         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4P8 TCGA-91-6828 
        1.08         0.56         0.49         0.33         1.28         1.22 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         4.18         6.08         0.07         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              0.10               0.03 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
            223.96             163.10 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              9.27               7.41 
[1] "0.1 - 224.0 (9.3)" "0.0 - 163.1 (7.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
      "22Q LOSS CNV"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-44-A479 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47F         TCGA-44-A47G 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-A4SS         TCGA-44-A4SU         TCGA-49-4486 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
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        TCGA-91-6848         TCGA-91-6849         TCGA-91-7771 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7546         TCGA-97-7547         TCGA-97-7552 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7553         TCGA-97-7554         TCGA-97-7937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7938         TCGA-97-7941         TCGA-97-8171 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-L4-A4E6         TCGA-L9-A443         TCGA-L9-A444 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MN-A4N4 
"22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV         35   44
  22Q LOSS WILD-TYPE  176  134
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  FEMALE           35                176
  MALE             44                134
D79V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q LOSS CNV                                4
  22Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q LOSS CNV                                      16
  22Q LOSS WILD-TYPE                                63
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS CNV                                                       49
  22Q LOSS WILD-TYPE                                                194
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q LOSS CNV                                                0
  22Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q LOSS CNV                                                   5
  22Q LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q LOSS CNV                                    0
  22Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q LOSS CNV                                        1
  22Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q LOSS CNV                                  0                             2
  22Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q LOSS CNV                                                   1
  22Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  22Q LOSS CNV                                       1
  22Q LOSS WILD-TYPE                                 3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  22Q LOSS CNV                                  0
  22Q LOSS WILD-TYPE                            3
D79V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS CNV        18  41   5   2
  22Q LOSS WILD-TYPE  62 128  17  14
D79V6, multiclass
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  T1           18                 62
  T2           41                128
  T3            5                 17
  T4            2                 14
                    vv
clus                  N0  N1 N2+N3
  22Q LOSS CNV        39  14    12
  22Q LOSS WILD-TYPE 133  44    40
D79V7, multiclass
       clus
vv      22Q LOSS CNV 22Q LOSS WILD-TYPE
  N0              39                133
  N1              14                 44
  N2+N3           12                 40
                    vv
clus                  M0  M1  MX
  22Q LOSS CNV        52   4   9
  22Q LOSS WILD-TYPE 150  12  54
D79V8, multiclass
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  M0           52                150
  M1            4                 12
  MX            9                 54
                    vv
clus                   I  II III  IV
  22Q LOSS CNV        35  14  14   3
  22Q LOSS WILD-TYPE 114  47  43  13
D79V9, multiclass
     clus
vv    22Q LOSS CNV 22Q LOSS WILD-TYPE
  I             35                114
  II            14                 47
  III           14                 43
  IV             3                 13
D79V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          7   72
  22Q LOSS WILD-TYPE   13  297
     clus
vv    22Q LOSS CNV 22Q LOSS WILD-TYPE
  NO             7                 13
  YES           72                297
D79V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q LOSS CNV                                                19
  22Q LOSS WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q LOSS CNV                                           11             24
  22Q LOSS WILD-TYPE                                     66             38
                    vv
clus                 LIFELONG NON-SMOKER
  22Q LOSS CNV                         8
  22Q LOSS WILD-TYPE                  28
D79V12, multiclass
                                             clus
vv                                            22Q LOSS CNV 22Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           19                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                11                 66
  CURRENT SMOKER                                        24                 38
  LIFELONG NON-SMOKER                                    8                 28
D79V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS CNV        52   0   0   1
  22Q LOSS WILD-TYPE 181   9   4  13
D79V14, multiclass
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  R0           52                181
  R1            0                  9
  R2            0                  4
  RX            1                 13

Clustering(80) Variable = Xq loss
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS CNV         6   3
  XQ LOSS WILD-TYPE 258  82
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                9               340 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                3                82 
$`XQ LOSS CNV`
TCGA-49-4507 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-8090 TCGA-55-A4DG 
        8.81         8.38        23.05        48.62         0.20         5.29 
TCGA-69-7764 TCGA-78-7536 TCGA-86-8054 
       13.61         8.02         0.62 

$`XQ LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        8.52         3.22         8.38         6.64         8.09         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.10         0.69         3.02         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.46         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 
        0.56         0.49         0.33         0.99         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        0.59         0.72         3.48         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        2.50         3.81         0.20        20.42 

      XQ LOSS CNV XQ LOSS WILD-TYPE 
             0.20              0.03 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
            48.62            223.96 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
            8.380             8.035 
[1] "0.2 - 48.6 (8.4)"  "0.0 - 224.0 (8.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A479        TCGA-44-A47A        TCGA-44-A47F        TCGA-44-A47G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SS        TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6761        TCGA-50-5044 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6597        TCGA-50-6673        TCGA-50-7109        TCGA-53-7624 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-53-7813        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1679 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-64-1681        TCGA-64-5774        TCGA-64-5775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3774        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7760        TCGA-69-7761        TCGA-69-7763        TCGA-69-7764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-69-7765        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-78-7143        TCGA-78-7145        TCGA-78-7146 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7540        TCGA-78-7542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-A456 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4D0        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7043        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-7546        TCGA-97-7547        TCGA-97-7552 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7553        TCGA-97-7554        TCGA-97-7937        TCGA-97-7938 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7941        TCGA-97-8171        TCGA-97-8172        TCGA-97-8174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443        TCGA-L9-A444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MN-A4N4 
"XQ LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          2    8
  XQ LOSS WILD-TYPE  209  170
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  FEMALE           2               209
  MALE             8               170
D80V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ LOSS CNV                                1
  XQ LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ LOSS CNV                                       1
  XQ LOSS WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS CNV                                                        7
  XQ LOSS WILD-TYPE                                                236
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ LOSS CNV                                                0
  XQ LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ LOSS CNV                                                   0
  XQ LOSS WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ LOSS CNV                                    1
  XQ LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ LOSS CNV                                        0
  XQ LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ LOSS CNV                                  0                             0
  XQ LOSS WILD-TYPE                            2                            18
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ LOSS CNV                                                   0
  XQ LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  XQ LOSS CNV                                       0
  XQ LOSS WILD-TYPE                                 4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  XQ LOSS CNV                                  0
  XQ LOSS WILD-TYPE                            3
D80V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS CNV         3   2   1   0
  XQ LOSS WILD-TYPE  77 167  21  16
D80V6, multiclass
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  T1           3                77
  T2           2               167
  T3           1                21
  T4           0                16
                   vv
clus                 N0  N1 N2+N3
  XQ LOSS CNV         4   1     1
  XQ LOSS WILD-TYPE 168  57    51
D80V7, multiclass
       clus
vv      XQ LOSS CNV XQ LOSS WILD-TYPE
  N0              4               168
  N1              1                57
  N2+N3           1                51
                   vv
clus                 M0  M1  MX
  XQ LOSS CNV         5   0   1
  XQ LOSS WILD-TYPE 197  16  62
D80V8, multiclass
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  M0           5               197
  M1           0                16
  MX           1                62
                   vv
clus                  I  II III  IV
  XQ LOSS CNV         4   0   2   0
  XQ LOSS WILD-TYPE 145  61  55  16
D80V9, multiclass
     clus
vv    XQ LOSS CNV XQ LOSS WILD-TYPE
  I             4               145
  II            0                61
  III           2                55
  IV            0                16
D80V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          2    8
  XQ LOSS WILD-TYPE   18  361
     clus
vv    XQ LOSS CNV XQ LOSS WILD-TYPE
  NO            2                18
  YES           8               361
D80V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ LOSS CNV                                                 4
  XQ LOSS WILD-TYPE                                          96
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ LOSS CNV                                            1              1
  XQ LOSS WILD-TYPE                                     76             61
                   vv
clus                LIFELONG NON-SMOKER
  XQ LOSS CNV                         0
  XQ LOSS WILD-TYPE                  36
D80V12, multiclass
                                             clus
vv                                            XQ LOSS CNV XQ LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4                96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1                76
  CURRENT SMOKER                                        1                61
  LIFELONG NON-SMOKER                                   0                36
D80V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS CNV         6   0   0   0
  XQ LOSS WILD-TYPE 227   9   4  14
D80V14, multiclass
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  R0           6               227
  R1           0                 9
  R2           0                 4
  RX           0                14
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V13 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V14 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
