
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/395633/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD-TP/3132696/1.GDAC_clinicalDataPicker.Finished/LUAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=395, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 190 to 184."
[1] 184 172
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "NAV3 MUTATION ANALYSIS"
[1] 3
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             34             138 
  CDH10 MUTATED CDH10 WILD-TYPE 
             34             138 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
[1] "ZNF676 MUTATION ANALYSIS"
[1] 3
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
[1] "OR2T4 MUTATION ANALYSIS"
[1] 3
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
[1] "GABRB3 MUTATION ANALYSIS"
[1] 3
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
[1] "OR4A5 MUTATION ANALYSIS"
[1] 3
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "OR2L8 MUTATION ANALYSIS"
[1] 3
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
[1] "ZNF804A MUTATION ANALYSIS"
[1] 3
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
[1] "C18ORF34 MUTATION ANALYSIS"
[1] 3
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
[1] "OR2T34 MUTATION ANALYSIS"
[1] 3
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
[1] "ZNF492 MUTATION ANALYSIS"
[1] 3
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
[1] "OR4C15 MUTATION ANALYSIS"
[1] 3
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
[1] "TBX22 MUTATION ANALYSIS"
[1] 3
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "LRRTM4 MUTATION ANALYSIS"
[1] 3
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "OR5D14 MUTATION ANALYSIS"
[1] 3
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
[1] "OR8H2 MUTATION ANALYSIS"
[1] 3
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
[1] "NRG3 MUTATION ANALYSIS"
[1] 3
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
[1] "HEATR7B2 MUTATION ANALYSIS"
[1] 3
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
[1] "HGF MUTATION ANALYSIS"
[1] 3
  HGF MUTATED HGF WILD-TYPE 
           16           156 
  HGF MUTATED HGF WILD-TYPE 
           16           156 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "WDR49 MUTATION ANALYSIS"
[1] 3
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
[1] "CXORF59 MUTATION ANALYSIS"
[1] 3
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
[1] "ZIC4 MUTATION ANALYSIS"
[1] 3
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
[1] "OR52E4 MUTATION ANALYSIS"
[1] 3
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
[1] "LRRIQ1 MUTATION ANALYSIS"
[1] 3
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
[1] "FAM71B MUTATION ANALYSIS"
[1] 3
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
[1] "EPHB1 MUTATION ANALYSIS"
[1] 3
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
[1] "RPL10L MUTATION ANALYSIS"
[1] 3
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
[1] "OR4S2 MUTATION ANALYSIS"
[1] 3
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
[1] "OR14I1 MUTATION ANALYSIS"
[1] 3
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "MAGEB18 MUTATION ANALYSIS"
[1] 3
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "SYT4 MUTATION ANALYSIS"
[1] 3
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
[1] "ZSWIM2 MUTATION ANALYSIS"
[1] 3
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "KRTAP15-1 MUTATION ANALYSIS"
[1] 3
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
[1] "NTNG1 MUTATION ANALYSIS"
[1] 3
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
[1] "SATB2 MUTATION ANALYSIS"
[1] 3
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
[1] "OR5F1 MUTATION ANALYSIS"
[1] 3
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
[1] "OR2W5 MUTATION ANALYSIS"
[1] 3
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
[1] "CMKLR1 MUTATION ANALYSIS"
[1] 3
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "DACH1 MUTATION ANALYSIS"
[1] 3
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
[1] "ARHGAP36 MUTATION ANALYSIS"
[1] 3
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
[1] "FABP12 MUTATION ANALYSIS"
[1] 3
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
[1] "C7 MUTATION ANALYSIS"
[1] 3
  C7 MUTATED C7 WILD-TYPE 
          14          158 
  C7 MUTATED C7 WILD-TYPE 
          14          158 
[1] "PI15 MUTATION ANALYSIS"
[1] 3
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
[1] "OR5D16 MUTATION ANALYSIS"
[1] 3
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
[1] "LIPI MUTATION ANALYSIS"
[1] 3
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
[1] "SEMA3A MUTATION ANALYSIS"
[1] 3
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "SLC35F1 MUTATION ANALYSIS"
[1] 3
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
[1] "ANKRD7 MUTATION ANALYSIS"
[1] 3
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
[1] "KRTAP11-1 MUTATION ANALYSIS"
[1] 3
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
[1] "OR6N2 MUTATION ANALYSIS"
[1] 3
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
[1] "C14ORF177 MUTATION ANALYSIS"
[1] 3
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "KCNS2 MUTATION ANALYSIS"
[1] 3
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
[1] "EPHA7 MUTATION ANALYSIS"
[1] 3
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             22             150 
  CDH18 MUTATED CDH18 WILD-TYPE 
             22             150 
[1] "CTNNA2 MUTATION ANALYSIS"
[1] 3
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
[1] "OR5T2 MUTATION ANALYSIS"
[1] 3
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
[1] "APCS MUTATION ANALYSIS"
[1] 3
  APCS MUTATED APCS WILD-TYPE 
             4            168 
  APCS MUTATED APCS WILD-TYPE 
             4            168 
[1] "IFNA7 MUTATION ANALYSIS"
[1] 3
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
[1] "UGT2B10 MUTATION ANALYSIS"
[1] 3
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
[1] "TBX5 MUTATION ANALYSIS"
[1] 3
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
[1] "VN1R2 MUTATION ANALYSIS"
[1] 3
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
[1] "ADAMTS18 MUTATION ANALYSIS"
[1] 3
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
[1] "OR51I1 MUTATION ANALYSIS"
[1] 3
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
[1] "GPR101 MUTATION ANALYSIS"
[1] 3
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
[1] "IRX1 MUTATION ANALYSIS"
[1] 3
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
[1] "OR10T2 MUTATION ANALYSIS"
[1] 3
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
[1] "OR4L1 MUTATION ANALYSIS"
[1] 3
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
[1] "RIT2 MUTATION ANALYSIS"
[1] 3
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
[1] "NPFFR2 MUTATION ANALYSIS"
[1] 3
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
[1] "CHM MUTATION ANALYSIS"
[1] 3
  CHM MUTATED CHM WILD-TYPE 
            6           166 
  CHM MUTATED CHM WILD-TYPE 
            6           166 
[1] "OR4D10 MUTATION ANALYSIS"
[1] 3
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
[1] "FOXI1 MUTATION ANALYSIS"
[1] 3
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
[1] "FAM47B MUTATION ANALYSIS"
[1] 3
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
[1] "OR5K3 MUTATION ANALYSIS"
[1] 3
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
[1] "HOXB3 MUTATION ANALYSIS"
[1] 3
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
[1] "PTN MUTATION ANALYSIS"
[1] 3
  PTN MUTATED PTN WILD-TYPE 
            4           168 
  PTN MUTATED PTN WILD-TYPE 
            4           168 
[1] "SAMD7 MUTATION ANALYSIS"
[1] 3
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
[1] "BIRC8 MUTATION ANALYSIS"
[1] 3
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
[1] "OR51A7 MUTATION ANALYSIS"
[1] 3
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
[1] "TYR MUTATION ANALYSIS"
[1] 3
  TYR MUTATED TYR WILD-TYPE 
           10           162 
  TYR MUTATED TYR WILD-TYPE 
           10           162 
[1] "TGFB2 MUTATION ANALYSIS"
[1] 3
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "CYLC1 MUTATION ANALYSIS"
[1] 3
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "FGF14 MUTATION ANALYSIS"
[1] 3
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
[1] "GC MUTATION ANALYSIS"
[1] 3
  GC MUTATED GC WILD-TYPE 
           5          167 
  GC MUTATED GC WILD-TYPE 
           5          167 
[1] "LCE1F MUTATION ANALYSIS"
[1] 3
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
[1] "RBM19 MUTATION ANALYSIS"
[1] 3
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
[1] "C2ORF51 MUTATION ANALYSIS"
[1] 3
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               8              164 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               8              164 
[1] "DIO2 MUTATION ANALYSIS"
[1] 3
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
[1] "FRG1 MUTATION ANALYSIS"
[1] 3
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
[1] "PIP MUTATION ANALYSIS"
[1] 3
  PIP MUTATED PIP WILD-TYPE 
            5           167 
  PIP MUTATED PIP WILD-TYPE 
            5           167 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
[1] "OR4A16 MUTATION ANALYSIS"
[1] 3
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "SLC10A2 MUTATION ANALYSIS"
[1] 3
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "SLITRK4 MUTATION ANALYSIS"
[1] 3
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 172 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
         863         1073          354         1357          158          574 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
         581          400          529          103          480          400 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
          97          246          311          253          196          189 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
         140          106          208            9          102          302 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
         236           95          165           82         1938           NA 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1110           NA         2318           NA           NA           NA 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
        1081         1421          428          999          268          896 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
          NA         1314          457          369          395          150 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653          257          460          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
          NA           NA         1015          701         1178         1479 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
        1374           87            2          992           24         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
         628         1189         1126         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
          61         1599          711          911          617          467 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 
          14           40          122           38           NA           NA 
TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-80-5611 TCGA-86-6562 TCGA-91-6828 
          NA           NA           NA           NA           NA           37 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
          NA           39           35           11 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=122,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "TOBACCOSMOKINGHISTORYINDICATOR"        
[12] "YEAROFTOBACCOSMOKINGONSET"             
[13] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
88 33 39  9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 172 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 41 108  14   8 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 41 108  14   8 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
95 37 34  1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
   95    37    35 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
95 37 34  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
   95    37    35 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 88  33  39   9 
[1] "table(vv)"
vv
  I  II III  IV 
 88  33  39   9 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 88  33  39   9 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 88  33  39   9 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=47, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=39, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    6  2
  CDKN2A WILD-TYPE 93 48
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              141 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               48 
$`CDKN2A MUTATED`
TCGA-05-4426 TCGA-05-4433 TCGA-38-4625 TCGA-44-5645 TCGA-49-4505 TCGA-50-6595 
       26.01        24.00        47.61         6.84        14.07         6.21 
TCGA-55-1594 TCGA-67-3771 
       38.73         1.97 

$`CDKN2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       42.31         3.88        25.51        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.97             0.07 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           47.61            85.32 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          19.035           13.150 
[1] "2.0 - 47.6 (19.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
                  cls
clus                0  1
  CDKN2A MUTATED    5  3
  CDKN2A WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      5    3
  CDKN2A WILD-TYPE   88   76
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D1V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDKN2A MUTATED                            0                                 2
  CDKN2A WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                    6
  CDKN2A WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDKN2A MUTATED                                            0
  CDKN2A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CDKN2A MUTATED                                0
  CDKN2A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                                    0
  CDKN2A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                              0                             0
  CDKN2A WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CDKN2A MUTATED                                   0
  CDKN2A WILD-TYPE                                 2
D1V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CDKN2A MUTATED     1   6   0   0
  CDKN2A WILD-TYPE  40 102  14   8
D1V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              1               40
  T2              6              102
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CDKN2A MUTATED    4  1     2
  CDKN2A WILD-TYPE 91 36    33
D1V7, multiclass
       clus
vv      CDKN2A MUTATED CDKN2A WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED     7   0   0
  CDKN2A WILD-TYPE 130   9  22
D1V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  CDKN2A MUTATED    5  1   2  0
  CDKN2A WILD-TYPE 83 32  37  9
D1V9, multiclass
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  I                5               83
  II               1               32
  III              2               37
  IV               0                9
D1V10, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     0   8
  CDKN2A WILD-TYPE  16 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   16  148
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               16
  YES              8              148
D1V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CDKN2A MUTATED                                             2
  CDKN2A WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CDKN2A MUTATED                                        4              2
  CDKN2A WILD-TYPE                                     42             26
                  vv
clus               LIFELONG NON-SMOKER
  CDKN2A MUTATED                     0
  CDKN2A WILD-TYPE                  24
D1V12, multiclass
                                             clus
vv                                            CDKN2A MUTATED CDKN2A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D1V13, continuous
                  vv
clus               R0 R1 R2 RX
  CDKN2A MUTATED    6  0  0  0
  CDKN2A WILD-TYPE 96  5  4 10
D1V14, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(2) Variable = EGFR MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  EGFR MUTATED    9 10
  EGFR WILD-TYPE 90 40
  EGFR MUTATED EGFR WILD-TYPE 
            19            130 
  EGFR MUTATED EGFR WILD-TYPE 
            10             40 
$`EGFR MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 
       19.92         9.96         8.02         4.96        37.71        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-6147 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       28.37         5.19         7.76        12.66        35.54        46.72 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6595 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       12.26         3.88         6.21         0.99         0.59        13.87 
TCGA-91-6835 
        1.15 

$`EGFR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4631 
        5.95         8.68        47.61        85.32        35.28        11.64 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       15.12         9.37         4.44        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       16.67        39.52         7.33         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        1.22        41.33         1.28         0.36 

  EGFR MUTATED EGFR WILD-TYPE 
          0.59           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         49.02          85.32 
  EGFR MUTATED EGFR WILD-TYPE 
         9.960         14.945 
[1] "0.6 - 49.0 (10.0)" "0.1 - 85.3 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
[1] "hr=" "2.3"
D2V2, continuous
D2V3, binary
                cls
clus              0  1
  EGFR MUTATED   15  7
  EGFR WILD-TYPE 78 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     15    7
  EGFR WILD-TYPE   78   72
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           15             78
  MALE              7             72
D2V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EGFR MUTATED                            1                                 5
  EGFR WILD-TYPE                          1                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EGFR MUTATED                                                   15
  EGFR WILD-TYPE                                                 99
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EGFR MUTATED                                            0
  EGFR WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  EGFR MUTATED                                0
  EGFR WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  EGFR MUTATED                                    1
  EGFR WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EGFR MUTATED                              0                             0
  EGFR WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  EGFR MUTATED                                   0
  EGFR WILD-TYPE                                 2
D2V5, multiclass
                vv
clus             T1 T2 T3 T4
  EGFR MUTATED    5 13  3  1
  EGFR WILD-TYPE 36 95 11  7
D2V6, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  T1            5             36
  T2           13             95
  T3            3             11
  T4            1              7
                vv
clus             N0 N1 N2+N3
  EGFR MUTATED    9  6     5
  EGFR WILD-TYPE 86 31    30
D2V7, multiclass
       clus
vv      EGFR MUTATED EGFR WILD-TYPE
  N0               9             86
  N1               6             31
  N2+N3            5             30
                vv
clus              M0  M1  MX
  EGFR MUTATED    17   2   2
  EGFR WILD-TYPE 120   7  20
D2V8, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  M0           17            120
  M1            2              7
  MX            2             20
                vv
clus              I II III IV
  EGFR MUTATED    8  6   6  2
  EGFR WILD-TYPE 80 27  33  7
D2V9, multiclass
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  I              8             80
  II             6             27
  III            6             33
  IV             2              7
D2V10, binary
                cls
clus               0   1
  EGFR MUTATED     1  21
  EGFR WILD-TYPE  15 135
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      1   21
  EGFR WILD-TYPE   15  135
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             1             15
  YES           21            135
D2V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EGFR MUTATED                                             4
  EGFR WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EGFR MUTATED                                       10              0
  EGFR WILD-TYPE                                     36             28
                vv
clus             LIFELONG NON-SMOKER
  EGFR MUTATED                     7
  EGFR WILD-TYPE                  17
D2V12, multiclass
                                             clus
vv                                            EGFR MUTATED EGFR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10             36
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    7             17
D2V13, continuous
                vv
clus             R0 R1 R2 RX
  EGFR MUTATED   12  1  1  1
  EGFR WILD-TYPE 90  4  3  9
D2V14, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  R0           12             90
  R1            1              4
  R2            1              3
  RX            1              9

Clustering(3) Variable = KRAS MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   28 13
  KRAS WILD-TYPE 71 37
  KRAS MUTATED KRAS WILD-TYPE 
            41            108 
  KRAS MUTATED KRAS WILD-TYPE 
            13             37 
$`KRAS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       38.07         3.98        37.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-35-3615 TCGA-38-4626 
        8.98        26.01        25.02        24.00         0.46        85.32 
TCGA-44-2668 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 TCGA-44-6777 
        8.09         0.30         3.35         9.93        63.72        32.45 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-50-5933 
       14.07        29.46        12.99        14.96        35.87        77.88 
TCGA-50-5936 TCGA-50-5941 TCGA-55-1595 TCGA-55-6642 TCGA-64-1677 TCGA-64-5774 
        8.45         9.37        48.62        32.61        20.65        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 TCGA-73-4659 
        0.10        30.44         7.33         2.04         0.59        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-91-6828 TCGA-91-6836 
       29.95         0.46         1.25         1.22         0.36 

$`KRAS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       29.95        30.02        26.01        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        4.96         2.96         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5939 
       49.28         8.05         9.27         8.78        21.47        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
       45.17         2.86         0.07         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       37.02        16.67        39.52         0.99         1.97         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 
        0.89         0.69        13.87         2.01        52.57        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         4.01        41.33         1.28         1.15 

  KRAS MUTATED KRAS WILD-TYPE 
          0.10           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         85.32          76.21 
  KRAS MUTATED KRAS WILD-TYPE 
         14.93          13.15 
[1] "0.1 - 85.3 (14.9)" "0.1 - 76.2 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
[1] "hr=" "1.4"
D3V2, continuous
D3V3, binary
                cls
clus              0  1
  KRAS MUTATED   23 24
  KRAS WILD-TYPE 70 55
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     23   24
  KRAS WILD-TYPE   70   55
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           23             70
  MALE             24             55
D3V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRAS MUTATED                            0                                12
  KRAS WILD-TYPE                          2                                27
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                   30
  KRAS WILD-TYPE                                                 84
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRAS MUTATED                                            0
  KRAS WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRAS MUTATED                                               1
  KRAS WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  KRAS MUTATED                                1
  KRAS WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  KRAS MUTATED                                    0
  KRAS WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRAS MUTATED                              1                             1
  KRAS WILD-TYPE                            1                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRAS MUTATED                                               0
  KRAS WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  KRAS MUTATED                                   1
  KRAS WILD-TYPE                                 1
D3V5, multiclass
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    6 32  5  4
  KRAS WILD-TYPE 35 76  9  4
D3V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6             35
  T2           32             76
  T3            5              9
  T4            4              4
                vv
clus             N0 N1 N2+N3
  KRAS MUTATED   28  7    11
  KRAS WILD-TYPE 67 30    24
D3V7, multiclass
       clus
vv      KRAS MUTATED KRAS WILD-TYPE
  N0              28             67
  N1               7             30
  N2+N3           11             24
                vv
clus             M0 M1 MX
  KRAS MUTATED   39  2  6
  KRAS WILD-TYPE 98  7 16
D3V8, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           39             98
  M1            2              7
  MX            6             16
                vv
clus              I II III IV
  KRAS MUTATED   25  8  12  2
  KRAS WILD-TYPE 63 25  27  7
D3V9, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             25             63
  II             8             25
  III           12             27
  IV             2              7
D3V10, binary
                cls
clus               0   1
  KRAS MUTATED     4  43
  KRAS WILD-TYPE  12 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      4   43
  KRAS WILD-TYPE   12  113
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             4             12
  YES           43            113
D3V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRAS MUTATED                                            21
  KRAS WILD-TYPE                                          41
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRAS MUTATED                                       12              9
  KRAS WILD-TYPE                                     34             19
                vv
clus             LIFELONG NON-SMOKER
  KRAS MUTATED                     2
  KRAS WILD-TYPE                  22
D3V12, multiclass
                                             clus
vv                                            KRAS MUTATED KRAS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           21             41
  CURRENT REFORMED SMOKER FOR > 15 YEARS                12             34
  CURRENT SMOKER                                         9             19
  LIFELONG NON-SMOKER                                    2             22
D3V13, continuous
                vv
clus             R0 R1 R2 RX
  KRAS MUTATED   28  0  2  3
  KRAS WILD-TYPE 74  5  2  7
D3V14, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           28             74
  R1            0              5
  R2            2              2
  RX            3              7

Clustering(4) Variable = STK11 MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  STK11 MUTATED    9  8
  STK11 WILD-TYPE 90 42
  STK11 MUTATED STK11 WILD-TYPE 
             17             132 
  STK11 MUTATED STK11 WILD-TYPE 
              8              42 
$`STK11 MUTATED`
TCGA-05-4415 TCGA-05-4417 TCGA-05-4432 TCGA-35-3615 TCGA-44-6144 TCGA-44-6776 
        2.96        14.93        25.02         0.46         0.30        63.72 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4507 TCGA-50-5072 TCGA-50-5932 
       16.41        76.21        28.11         8.81         8.05        35.87 
TCGA-50-5939 TCGA-55-1596 TCGA-67-3774 TCGA-73-4670 TCGA-73-4677 
       15.12        45.17         0.59         0.46         1.25 

$`STK11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        20.05         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        1.02         4.96         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-49-4488 
        3.12         5.42         2.70        32.45        36.49        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  STK11 MUTATED STK11 WILD-TYPE 
           0.30            0.07 
  STK11 MUTATED STK11 WILD-TYPE 
          76.21           85.32 
  STK11 MUTATED STK11 WILD-TYPE 
          14.93           13.51 
[1] "0.3 - 76.2 (14.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
D4V3, binary
                 cls
clus               0  1
  STK11 MUTATED    7 13
  STK11 WILD-TYPE 86 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      7   13
  STK11 WILD-TYPE   86   66
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  FEMALE             7              86
  MALE              13              66
D4V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STK11 MUTATED                            0                                 6
  STK11 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STK11 MUTATED                                                   14
  STK11 WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STK11 MUTATED                                            0
  STK11 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STK11 MUTATED                                0
  STK11 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STK11 MUTATED                                    0
  STK11 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STK11 MUTATED                              0                             0
  STK11 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  STK11 MUTATED                                   0
  STK11 WILD-TYPE                                 2
D4V5, multiclass
                 vv
clus              T1 T2 T3 T4
  STK11 MUTATED    4 13  1  2
  STK11 WILD-TYPE 37 95 13  6
D4V6, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  T1             4              37
  T2            13              95
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  STK11 MUTATED   12  5     3
  STK11 WILD-TYPE 83 32    32
D4V7, multiclass
       clus
vv      STK11 MUTATED STK11 WILD-TYPE
  N0               12              83
  N1                5              32
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  STK11 MUTATED    17   1   2
  STK11 WILD-TYPE 120   8  20
D4V8, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  M0            17             120
  M1             1               8
  MX             2              20
                 vv
clus               I II III IV
  STK11 MUTATED   11  4   4  1
  STK11 WILD-TYPE 77 29  35  8
D4V9, multiclass
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  I              11              77
  II              4              29
  III             4              35
  IV              1               8
D4V10, binary
                 cls
clus                0   1
  STK11 MUTATED     2  18
  STK11 WILD-TYPE  14 138
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   14  138
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              14
  YES            18             138
D4V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  STK11 MUTATED                                             8
  STK11 WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  STK11 MUTATED                                        6              3
  STK11 WILD-TYPE                                     40             25
                 vv
clus              LIFELONG NON-SMOKER
  STK11 MUTATED                     2
  STK11 WILD-TYPE                  22
D4V12, multiclass
                                             clus
vv                                            STK11 MUTATED STK11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     2              22
D4V13, continuous
                 vv
clus              R0 R1 R2 RX
  STK11 MUTATED   13  0  0  1
  STK11 WILD-TYPE 89  5  4  9
D4V14, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  R0            13              89
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   51 27
  TP53 WILD-TYPE 48 23
  TP53 MUTATED TP53 WILD-TYPE 
            78             71 
  TP53 MUTATED TP53 WILD-TYPE 
            27             23 
$`TP53 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       20.05        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       25.02        24.00         4.96         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       47.61        28.37        35.28        44.61         5.19        19.10 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 
       17.39        15.78         3.19         8.09        10.22         6.44 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 
        3.48         6.84         0.30         3.35         7.76         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4490 
        2.70        32.45        36.49        16.41        28.11        12.66 
TCGA-49-4505 TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 
       14.07        43.20        71.47        48.82         9.76        49.28 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        8.78        77.88        15.12         9.37        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 TCGA-64-1676 
       23.05        38.73        45.17         2.86         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-3771 
       20.65        39.09         0.10        30.44         0.99         1.97 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
       20.28         0.46         4.01        41.33         1.28         0.36 

$`TP53 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       38.07         3.98        37.02         2.96        14.93         8.98 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 TCGA-44-2655 TCGA-44-2657 
       85.32        37.71        49.02        11.64        18.87        13.15 
TCGA-44-2661 TCGA-44-2665 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-6146 
        3.39        13.15         8.32         6.21         4.60         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
        3.12        63.72        76.21        28.57        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5072 
       12.99         4.93        20.48        14.96        25.81         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-6597 
        9.27        35.87        21.47         8.45         4.44        33.37 
TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       48.62         0.07        32.61        37.02        83.84        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       39.52         7.33         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6835 
       15.35         1.32         1.25         1.22         1.15 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         77.88          85.32 
  TP53 MUTATED TP53 WILD-TYPE 
        14.595         13.150 
[1] "0.1 - 77.9 (14.6)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
                cls
clus              0  1
  TP53 MUTATED   43 44
  TP53 WILD-TYPE 50 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     43   44
  TP53 WILD-TYPE   50   35
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           43             50
  MALE             44             35
D5V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TP53 MUTATED                            1                                22
  TP53 WILD-TYPE                          1                                17
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                   60
  TP53 WILD-TYPE                                                 54
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TP53 MUTATED                                            0
  TP53 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TP53 MUTATED                                               2
  TP53 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TP53 MUTATED                                0
  TP53 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TP53 MUTATED                                    0
  TP53 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TP53 MUTATED                              0                             2
  TP53 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TP53 MUTATED                                               0
  TP53 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  TP53 MUTATED                                   0
  TP53 WILD-TYPE                                 2
D5V5, multiclass
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED   20 56  5  5
  TP53 WILD-TYPE 21 52  9  3
D5V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           20             21
  T2           56             52
  T3            5              9
  T4            5              3
                vv
clus             N0 N1 N2+N3
  TP53 MUTATED   49 17    17
  TP53 WILD-TYPE 46 20    18
D5V7, multiclass
       clus
vv      TP53 MUTATED TP53 WILD-TYPE
  N0              49             46
  N1              17             20
  N2+N3           17             18
                vv
clus             M0 M1 MX
  TP53 MUTATED   67  5 12
  TP53 WILD-TYPE 70  4 10
D5V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           67             70
  M1            5              4
  MX           12             10
                vv
clus              I II III IV
  TP53 MUTATED   46 16  19  5
  TP53 WILD-TYPE 42 17  20  4
D5V9, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             46             42
  II            16             17
  III           19             20
  IV             5              4
D5V10, binary
                cls
clus              0  1
  TP53 MUTATED    8 79
  TP53 WILD-TYPE  8 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      8   79
  TP53 WILD-TYPE    8   77
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             8              8
  YES           79             77
D5V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TP53 MUTATED                                            34
  TP53 WILD-TYPE                                          28
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TP53 MUTATED                                       19             21
  TP53 WILD-TYPE                                     27              7
                vv
clus             LIFELONG NON-SMOKER
  TP53 MUTATED                     7
  TP53 WILD-TYPE                  17
D5V12, multiclass
                                             clus
vv                                            TP53 MUTATED TP53 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           34             28
  CURRENT REFORMED SMOKER FOR > 15 YEARS                19             27
  CURRENT SMOKER                                        21              7
  LIFELONG NON-SMOKER                                    7             17
D5V13, continuous
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   49  3  1  5
  TP53 WILD-TYPE 53  2  3  5
D5V14, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           49             53
  R1            3              2
  R2            1              3
  RX            5              5

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   17 11
  KEAP1 WILD-TYPE 82 39
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             28             121 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             11              39 
$`KEAP1 MUTATED`
TCGA-05-4384 TCGA-05-4418 TCGA-35-3615 TCGA-35-5375 TCGA-38-4631 TCGA-44-2655 
       14.01         8.98         0.46         8.68        11.64        18.87 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4506 
       63.72        36.49        16.41        76.21        28.57        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 TCGA-50-5068 
        8.81        43.20        15.02        12.13        14.96        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 TCGA-67-3774 
        8.45        15.12         2.86        39.52         1.97         0.59 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       20.28         0.46         4.01         1.25 

$`KEAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        44.61         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
        5.42         2.70        32.45        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 
       46.72        14.07        29.46        29.75        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       20.48        71.47        48.82        25.81         9.76         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 
        9.27         8.78        35.87        77.88        21.47         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       16.67         7.33         0.99         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.46            0.07 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          76.21           85.32 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
         14.485          13.150 
[1] "0.5 - 76.2 (14.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
                 cls
clus               0  1
  KEAP1 MUTATED   17 15
  KEAP1 WILD-TYPE 76 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED     17   15
  KEAP1 WILD-TYPE   76   64
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D6V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KEAP1 MUTATED                            0                                 6
  KEAP1 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                   22
  KEAP1 WILD-TYPE                                                 92
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KEAP1 MUTATED                                            0
  KEAP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KEAP1 MUTATED                                1
  KEAP1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                                    0
  KEAP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                              0                             1
  KEAP1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  KEAP1 MUTATED                                   2
  KEAP1 WILD-TYPE                                 0
D6V5, multiclass
                 vv
clus              T1 T2 T3 T4
  KEAP1 MUTATED   11 18  2  1
  KEAP1 WILD-TYPE 30 90 12  7
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1            11              30
  T2            18              90
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  KEAP1 MUTATED   18  7     7
  KEAP1 WILD-TYPE 77 30    28
D6V7, multiclass
       clus
vv      KEAP1 MUTATED KEAP1 WILD-TYPE
  N0               18              77
  N1                7              30
  N2+N3             7              28
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    23   2   7
  KEAP1 WILD-TYPE 114   7  15
D6V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            23             114
  M1             2               7
  MX             7              15
                 vv
clus               I II III IV
  KEAP1 MUTATED   17  5   8  2
  KEAP1 WILD-TYPE 71 28  31  7
D6V9, multiclass
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  I              17              71
  II              5              28
  III             8              31
  IV              2               7
D6V10, binary
                 cls
clus                0   1
  KEAP1 MUTATED     4  28
  KEAP1 WILD-TYPE  12 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      4   28
  KEAP1 WILD-TYPE   12  128
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              4              12
  YES            28             128
D6V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KEAP1 MUTATED                                            13
  KEAP1 WILD-TYPE                                          49
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KEAP1 MUTATED                                       11              4
  KEAP1 WILD-TYPE                                     35             24
                 vv
clus              LIFELONG NON-SMOKER
  KEAP1 MUTATED                     2
  KEAP1 WILD-TYPE                  22
D6V12, multiclass
                                             clus
vv                                            KEAP1 MUTATED KEAP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 11              35
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     2              22
D6V13, continuous
                 vv
clus              R0 R1 R2 RX
  KEAP1 MUTATED   19  1  0  2
  KEAP1 WILD-TYPE 83  4  4  8
D6V14, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  R0            19              83
  R1             1               4
  R2             0               4
  RX             2               8

Clustering(7) Variable = NAV3 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  NAV3 MUTATED   22 11
  NAV3 WILD-TYPE 77 39
  NAV3 MUTATED NAV3 WILD-TYPE 
            33            116 
  NAV3 MUTATED NAV3 WILD-TYPE 
            11             39 
$`NAV3 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       19.92        14.01        37.02         9.96        47.05         2.96 
TCGA-05-4432 TCGA-35-4122 TCGA-38-4631 TCGA-38-4632 TCGA-44-2662 TCGA-44-3918 
       25.02         7.36        11.64        44.61        15.78         6.44 
TCGA-44-6774 TCGA-49-4488 TCGA-49-4505 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        5.42        28.57        14.07        43.20        12.13        12.99 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5068 TCGA-50-5939 TCGA-50-5941 TCGA-55-5899 
       71.47        48.82        49.28        15.12         9.37         2.86 
TCGA-64-1677 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-6217 TCGA-73-4659 
       20.65        39.52         1.97         2.04        13.87        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-91-6836 
       20.28        15.35         0.36 

$`NAV3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 
       38.07         3.98        24.03         8.02        20.05        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 
       29.46        29.75        15.02         4.93        20.48        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         8.45         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        30.44        16.67         7.33         0.99         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.59         0.89         0.69         2.01        52.57        29.95 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  NAV3 MUTATED NAV3 WILD-TYPE 
          0.36           0.07 
  NAV3 MUTATED NAV3 WILD-TYPE 
         71.47          85.32 
  NAV3 MUTATED NAV3 WILD-TYPE 
         15.12          12.46 
[1] "0.4 - 71.5 (15.1)" "0.1 - 85.3 (12.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
[1] "hr=" "1.1"
D7V2, continuous
D7V3, binary
                cls
clus              0  1
  NAV3 MUTATED   22 13
  NAV3 WILD-TYPE 71 66
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED     22   13
  NAV3 WILD-TYPE   71   66
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  FEMALE           22             71
  MALE             13             66
D7V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NAV3 MUTATED                            0                                11
  NAV3 WILD-TYPE                          2                                28
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NAV3 MUTATED                                                   21
  NAV3 WILD-TYPE                                                 93
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NAV3 MUTATED                                            0
  NAV3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NAV3 MUTATED                                               0
  NAV3 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  NAV3 MUTATED                                1
  NAV3 WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  NAV3 MUTATED                                    1
  NAV3 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NAV3 MUTATED                              0                             1
  NAV3 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NAV3 MUTATED                                               0
  NAV3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  NAV3 MUTATED                                   0
  NAV3 WILD-TYPE                                 2
D7V5, multiclass
                vv
clus             T1 T2 T3 T4
  NAV3 MUTATED   10 21  1  3
  NAV3 WILD-TYPE 31 87 13  5
D7V6, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  T1           10             31
  T2           21             87
  T3            1             13
  T4            3              5
                vv
clus             N0 N1 N2+N3
  NAV3 MUTATED   17 10     8
  NAV3 WILD-TYPE 78 27    27
D7V7, multiclass
       clus
vv      NAV3 MUTATED NAV3 WILD-TYPE
  N0              17             78
  N1              10             27
  N2+N3            8             27
                vv
clus              M0  M1  MX
  NAV3 MUTATED    27   2   6
  NAV3 WILD-TYPE 110   7  16
D7V8, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  M0           27            110
  M1            2              7
  MX            6             16
                vv
clus              I II III IV
  NAV3 MUTATED   17  7   9  2
  NAV3 WILD-TYPE 71 26  30  7
D7V9, multiclass
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  I             17             71
  II             7             26
  III            9             30
  IV             2              7
D7V10, binary
                cls
clus               0   1
  NAV3 MUTATED     3  32
  NAV3 WILD-TYPE  13 124
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED      3   32
  NAV3 WILD-TYPE   13  124
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  NO             3             13
  YES           32            124
D7V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NAV3 MUTATED                                            13
  NAV3 WILD-TYPE                                          49
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NAV3 MUTATED                                       11              8
  NAV3 WILD-TYPE                                     35             20
                vv
clus             LIFELONG NON-SMOKER
  NAV3 MUTATED                     0
  NAV3 WILD-TYPE                  24
D7V12, multiclass
                                             clus
vv                                            NAV3 MUTATED NAV3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                11             35
  CURRENT SMOKER                                         8             20
  LIFELONG NON-SMOKER                                    0             24
D7V13, continuous
                vv
clus             R0 R1 R2 RX
  NAV3 MUTATED   24  0  0  3
  NAV3 WILD-TYPE 78  5  4  7
D7V14, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  R0           24             78
  R1            0              5
  R2            0              4
  RX            3              7

Clustering(8) Variable = MAGEC1 MUTATION ANALYSIS
D8V1, survival
                  sevent
clus2               0  1
  MAGEC1 MUTATED   12  8
  MAGEC1 WILD-TYPE 87 42
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              20              129 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               8               42 
$`MAGEC1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-38-4626 
       19.92         9.96        26.01        25.02        25.02        85.32 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-50-5051 TCGA-50-5932 
       11.64        44.61        19.10        17.39        14.96        35.87 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-64-1677 TCGA-64-5778 
        9.37        42.31        11.05        12.16        20.65        30.44 
TCGA-64-5815 TCGA-67-6217 
        7.33        13.87 

$`MAGEC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       30.02        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84         0.10        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
            7.33             0.07 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           85.32            83.84 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           19.51            12.66 
[1] "7.3 - 85.3 (19.5)" "0.1 - 83.8 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
                  cls
clus                0  1
  MAGEC1 MUTATED   13 10
  MAGEC1 WILD-TYPE 80 69
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED     13   10
  MAGEC1 WILD-TYPE   80   69
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  FEMALE             13               80
  MALE               10               69
D8V4, continuous
[1] "Remove cluster labels:" "MAGEC1 MUTATED"        
clus
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-71-6725 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MAGEC1 MUTATED                            0                                 8
  MAGEC1 WILD-TYPE                          2                                31
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MAGEC1 MUTATED                                                   13
  MAGEC1 WILD-TYPE                                                101
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MAGEC1 MUTATED                                            0
  MAGEC1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MAGEC1 MUTATED                                               1
  MAGEC1 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  MAGEC1 MUTATED                                0
  MAGEC1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  MAGEC1 MUTATED                                    0
  MAGEC1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MAGEC1 MUTATED                              0                             1
  MAGEC1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MAGEC1 MUTATED                                               0
  MAGEC1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  MAGEC1 MUTATED                                   0
  MAGEC1 WILD-TYPE                                 2
D8V5, multiclass
                  vv
clus               T1 T2 T3 T4
  MAGEC1 MUTATED    2 18  2  1
  MAGEC1 WILD-TYPE 39 90 12  7
D8V6, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  T1              2               39
  T2             18               90
  T3              2               12
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  MAGEC1 MUTATED    8  8     7
  MAGEC1 WILD-TYPE 87 29    28
D8V7, multiclass
       clus
vv      MAGEC1 MUTATED MAGEC1 WILD-TYPE
  N0                 8               87
  N1                 8               29
  N2+N3              7               28
                  vv
clus                M0  M1  MX
  MAGEC1 MUTATED    22   1   0
  MAGEC1 WILD-TYPE 115   8  22
D8V8, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  M0             22              115
  M1              1                8
  MX              0               22
                  vv
clus                I II III IV
  MAGEC1 MUTATED    7  7   8  1
  MAGEC1 WILD-TYPE 81 26  31  8
D8V9, multiclass
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  I                7               81
  II               7               26
  III              8               31
  IV               1                8
D8V10, binary
                  cls
clus                 0   1
  MAGEC1 MUTATED     1  22
  MAGEC1 WILD-TYPE  15 134
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      1   22
  MAGEC1 WILD-TYPE   15  134
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  NO               1               15
  YES             22              134
D8V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MAGEC1 MUTATED                                            14
  MAGEC1 WILD-TYPE                                          48
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MAGEC1 MUTATED                                        4              4
  MAGEC1 WILD-TYPE                                     42             24
                  vv
clus               LIFELONG NON-SMOKER
  MAGEC1 MUTATED                     0
  MAGEC1 WILD-TYPE                  24
D8V12, multiclass
                                             clus
vv                                            MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             14               48
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0               24
D8V13, continuous
                  vv
clus               R0 R1 R2 RX
  MAGEC1 MUTATED   14  0  1  1
  MAGEC1 WILD-TYPE 88  5  3  9
D8V14, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  R0             14               88
  R1              0                5
  R2              1                3
  RX              1                9

Clustering(9) Variable = CDH10 MUTATION ANALYSIS
D9V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED   24  8
  CDH10 WILD-TYPE 75 42
  CDH10 MUTATED CDH10 WILD-TYPE 
             32             117 
  CDH10 MUTATED CDH10 WILD-TYPE 
              8              42 
$`CDH10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 
       19.92         9.96        47.05        20.05         2.96        30.02 
TCGA-05-4427 TCGA-35-3615 TCGA-44-2657 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       26.01         0.46        13.15         8.09         8.32         6.44 
TCGA-44-6145 TCGA-44-6778 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-50-5045 
        3.35        36.49        29.75        43.20        12.13        71.47 
TCGA-50-5049 TCGA-50-5068 TCGA-50-5942 TCGA-50-6590 TCGA-50-6593 TCGA-64-5774 
       48.82        49.28         4.44        42.31        11.05        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-73-4658 TCGA-91-6828 
       30.44        39.52         0.99         1.97        52.57         1.22 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

$`CDH10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       14.93         8.98        29.95        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        15.02        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       12.26        11.47         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 
       37.02         0.10        16.67         7.33         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
        0.59         0.89         0.69        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6836 
        1.25        41.33         0.36 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.46            0.07 
  CDH10 MUTATED CDH10 WILD-TYPE 
          83.84           85.32 
  CDH10 MUTATED CDH10 WILD-TYPE 
         16.535          13.870 
[1] "0.5 - 83.8 (16.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
[1] "hr=" "2.1"
D9V2, continuous
D9V3, binary
                 cls
clus               0  1
  CDH10 MUTATED   20 14
  CDH10 WILD-TYPE 73 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     20   14
  CDH10 WILD-TYPE   73   65
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE            20              73
  MALE              14              65
D9V4, continuous
[1] "Remove cluster labels:" "CDH10 MUTATED"         
clus
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDH10 MUTATED                            0                                11
  CDH10 WILD-TYPE                          2                                28
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDH10 MUTATED                                                   20
  CDH10 WILD-TYPE                                                 94
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDH10 MUTATED                                            0
  CDH10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDH10 MUTATED                                               1
  CDH10 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CDH10 MUTATED                                1
  CDH10 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CDH10 MUTATED                                    0
  CDH10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDH10 MUTATED                              0                             1
  CDH10 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDH10 MUTATED                                               0
  CDH10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  CDH10 MUTATED                                   0
  CDH10 WILD-TYPE                                 2
D9V5, multiclass
                 vv
clus              T1 T2 T3 T4
  CDH10 MUTATED   13 17  1  3
  CDH10 WILD-TYPE 28 91 13  5
D9V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1            13              28
  T2            17              91
  T3             1              13
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  CDH10 MUTATED   24  4     5
  CDH10 WILD-TYPE 71 33    30
D9V7, multiclass
       clus
vv      CDH10 MUTATED CDH10 WILD-TYPE
  N0               24              71
  N1                4              33
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  CDH10 MUTATED    27   0   7
  CDH10 WILD-TYPE 110   9  15
D9V8, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  M0            27             110
  M1             0               9
  MX             7              15
                 vv
clus               I II III IV
  CDH10 MUTATED   24  3   6  0
  CDH10 WILD-TYPE 64 30  33  9
D9V9, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I              24              64
  II              3              30
  III             6              33
  IV              0               9
D9V10, binary
                 cls
clus                0   1
  CDH10 MUTATED     3  31
  CDH10 WILD-TYPE  13 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      3   31
  CDH10 WILD-TYPE   13  125
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  NO              3              13
  YES            31             125
D9V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CDH10 MUTATED                                            19
  CDH10 WILD-TYPE                                          43
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CDH10 MUTATED                                        8              2
  CDH10 WILD-TYPE                                     38             26
                 vv
clus              LIFELONG NON-SMOKER
  CDH10 MUTATED                     2
  CDH10 WILD-TYPE                  22
D9V12, multiclass
                                             clus
vv                                            CDH10 MUTATED CDH10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            19              43
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D9V13, continuous
                 vv
clus              R0 R1 R2 RX
  CDH10 MUTATED   18  1  0  2
  CDH10 WILD-TYPE 84  4  4  8
D9V14, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  R0            18              84
  R1             1               4
  R2             0               4
  RX             2               8

Clustering(10) Variable = MUC7 MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED   11  3
  MUC7 WILD-TYPE 88 47
  MUC7 MUTATED MUC7 WILD-TYPE 
            14            135 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             47 
$`MUC7 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-44-6778 
       19.92        37.02        30.02         7.36         8.68        36.49 
TCGA-49-4507 TCGA-49-6742 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 TCGA-64-5774 
        8.81        15.02        11.05        23.05         2.86        83.84 
TCGA-64-5781 TCGA-91-6828 
       39.52         1.22 

$`MUC7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       14.07        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MUC7 MUTATED MUC7 WILD-TYPE 
          1.22           0.07 
  MUC7 MUTATED MUC7 WILD-TYPE 
         83.84          85.32 
  MUC7 MUTATED MUC7 WILD-TYPE 
         17.47          13.15 
[1] "1.2 - 83.8 (17.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
[1] "hr=" "2"  
D10V2, continuous
D10V3, binary
                cls
clus              0  1
  MUC7 MUTATED    4 11
  MUC7 WILD-TYPE 89 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      4   11
  MUC7 WILD-TYPE   89   68
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            4             89
  MALE             11             68
D10V4, continuous
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-64-1677     TCGA-64-5778     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MUC7 MUTATED                            0                                 5
  MUC7 WILD-TYPE                          2                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MUC7 MUTATED                                                    9
  MUC7 WILD-TYPE                                                105
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MUC7 MUTATED                                            0
  MUC7 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MUC7 MUTATED                                0
  MUC7 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                                    0
  MUC7 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                              0                             0
  MUC7 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  MUC7 MUTATED                                   1
  MUC7 WILD-TYPE                                 1
D10V5, multiclass
                vv
clus              T1  T2  T3  T4
  MUC7 MUTATED     5   8   2   0
  MUC7 WILD-TYPE  36 100  12   8
D10V6, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  T1            5             36
  T2            8            100
  T3            2             12
  T4            0              8
                vv
clus             N0 N1 N2+N3
  MUC7 MUTATED    9  4     2
  MUC7 WILD-TYPE 86 33    33
D10V7, multiclass
       clus
vv      MUC7 MUTATED MUC7 WILD-TYPE
  N0               9             86
  N1               4             33
  N2+N3            2             33
                vv
clus              M0  M1  MX
  MUC7 MUTATED    12   0   3
  MUC7 WILD-TYPE 125   9  19
D10V8, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  M0           12            125
  M1            0              9
  MX            3             19
                vv
clus              I II III IV
  MUC7 MUTATED    9  3   3  0
  MUC7 WILD-TYPE 79 30  36  9
D10V9, multiclass
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  I              9             79
  II             3             30
  III            3             36
  IV             0              9
D10V10, binary
                cls
clus               0   1
  MUC7 MUTATED     1  14
  MUC7 WILD-TYPE  15 142
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      1   14
  MUC7 WILD-TYPE   15  142
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             1             15
  YES           14            142
D10V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MUC7 MUTATED                                            11
  MUC7 WILD-TYPE                                          51
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MUC7 MUTATED                                        3              1
  MUC7 WILD-TYPE                                     43             27
                vv
clus             LIFELONG NON-SMOKER
  MUC7 MUTATED                     0
  MUC7 WILD-TYPE                  24
D10V12, multiclass
                                             clus
vv                                            MUC7 MUTATED MUC7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           11             51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D10V13, continuous
                vv
clus             R0 R1 R2 RX
  MUC7 MUTATED   10  1  0  0
  MUC7 WILD-TYPE 92  4  4 10
D10V14, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  R0           10             92
  R1            1              4
  R2            0              4
  RX            0             10

Clustering(11) Variable = TMTC1 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   14  5
  TMTC1 WILD-TYPE 85 45
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             19             130 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              5              45 
$`TMTC1 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4420 
        3.98        37.02         9.96        47.05         2.96        29.95 
TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-44-3918 TCGA-50-5045 TCGA-50-5941 
       26.01        25.02        47.61         6.44        71.47         9.37 
TCGA-50-5942 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4668 TCGA-73-4670 
        4.44        16.67        39.52         1.97        15.35         0.46 
TCGA-91-6829 
       41.33 

$`TMTC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07        19.92        14.01        24.03         8.02        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 
       14.93         8.98        30.02        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        0.10        30.44         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.46            0.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          71.47           85.32 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          16.67           13.15 
[1] "0.5 - 71.5 (16.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
[1] "hr=" "1.6"
D11V2, continuous
D11V3, binary
                 cls
clus               0  1
  TMTC1 MUTATED   16  6
  TMTC1 WILD-TYPE 77 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     16    6
  TMTC1 WILD-TYPE   77   73
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE            16              77
  MALE               6              73
D11V4, continuous
[1] "Remove cluster labels:" "TMTC1 MUTATED"         
clus
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TMTC1 MUTATED                            1                                 9
  TMTC1 WILD-TYPE                          1                                30
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMTC1 MUTATED                                                    9
  TMTC1 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TMTC1 MUTATED                                            0
  TMTC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TMTC1 MUTATED                                               1
  TMTC1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TMTC1 MUTATED                                0
  TMTC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                                    1
  TMTC1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                              0                             1
  TMTC1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TMTC1 MUTATED                                               0
  TMTC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  TMTC1 MUTATED                                   0
  TMTC1 WILD-TYPE                                 2
D11V5, multiclass
                 vv
clus              T1 T2 T3 T4
  TMTC1 MUTATED    3 14  2  3
  TMTC1 WILD-TYPE 38 94 12  5
D11V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             3              38
  T2            14              94
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  TMTC1 MUTATED   11  6     5
  TMTC1 WILD-TYPE 84 31    30
D11V7, multiclass
       clus
vv      TMTC1 MUTATED TMTC1 WILD-TYPE
  N0               11              84
  N1                6              31
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  TMTC1 MUTATED    19   2   1
  TMTC1 WILD-TYPE 118   7  21
D11V8, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  M0            19             118
  M1             2               7
  MX             1              21
                 vv
clus               I II III IV
  TMTC1 MUTATED    9  3   7  2
  TMTC1 WILD-TYPE 79 30  32  7
D11V9, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  I               9              79
  II              3              30
  III             7              32
  IV              2               7
D11V10, binary
                 cls
clus                0   1
  TMTC1 MUTATED     2  20
  TMTC1 WILD-TYPE  14 136
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      2   20
  TMTC1 WILD-TYPE   14  136
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              2              14
  YES            20             136
D11V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMTC1 MUTATED                                            13
  TMTC1 WILD-TYPE                                          49
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMTC1 MUTATED                                        4              4
  TMTC1 WILD-TYPE                                     42             24
                 vv
clus              LIFELONG NON-SMOKER
  TMTC1 MUTATED                     0
  TMTC1 WILD-TYPE                  24
D11V12, multiclass
                                             clus
vv                                            TMTC1 MUTATED TMTC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D11V13, continuous
                 vv
clus              R0 R1 R2 RX
  TMTC1 MUTATED   15  1  2  0
  TMTC1 WILD-TYPE 87  4  2 10
D11V14, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  R0            15              87
  R1             1               4
  R2             2               2
  RX             0              10

Clustering(12) Variable = OR4C16 MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED   10  4
  OR4C16 WILD-TYPE 89 46
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              135 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               4               46 
$`OR4C16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-4112 TCGA-49-4487 TCGA-49-6743 TCGA-50-5049 
       19.92         9.96         4.60        28.11        12.13        48.82 
TCGA-50-5066 TCGA-50-5941 TCGA-50-6592 TCGA-50-6594 TCGA-55-1595 TCGA-64-5781 
        9.76         9.37        25.51        12.16        48.62        39.52 
TCGA-71-6725 TCGA-91-6831 
        2.01         1.28 

$`OR4C16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       41.33         1.15         0.36 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            1.28             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           48.82            85.32 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
          12.145           14.010 
[1] "1.3 - 48.8 (12.1)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
                  cls
clus                0  1
  OR4C16 MUTATED    9  5
  OR4C16 WILD-TYPE 84 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      9    5
  OR4C16 WILD-TYPE   84   74
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D12V4, continuous
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5778       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4C16 MUTATED                            0                                 4
  OR4C16 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C16 MUTATED                                                    7
  OR4C16 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4C16 MUTATED                                            0
  OR4C16 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4C16 MUTATED                                2
  OR4C16 WILD-TYPE                              0
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                                    0
  OR4C16 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                              0                             1
  OR4C16 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4C16 MUTATED                                   0
  OR4C16 WILD-TYPE                                 2
D12V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4C16 MUTATED     4   8   1   1
  OR4C16 WILD-TYPE  37 100  13   7
D12V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              4               37
  T2              8              100
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR4C16 MUTATED   10  1     3
  OR4C16 WILD-TYPE 85 36    32
D12V7, multiclass
       clus
vv      OR4C16 MUTATED OR4C16 WILD-TYPE
  N0                10               85
  N1                 1               36
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  OR4C16 MUTATED    12   0   2
  OR4C16 WILD-TYPE 125   9  20
D12V8, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0             12              125
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  OR4C16 MUTATED   10  0   4  0
  OR4C16 WILD-TYPE 78 33  35  9
D12V9, multiclass
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  I               10               78
  II               0               33
  III              4               35
  IV               0                9
D12V10, binary
                  cls
clus                 0   1
  OR4C16 MUTATED     1  13
  OR4C16 WILD-TYPE  15 143
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      1   13
  OR4C16 WILD-TYPE   15  143
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               1               15
  YES             13              143
D12V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4C16 MUTATED                                             7
  OR4C16 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4C16 MUTATED                                        2              3
  OR4C16 WILD-TYPE                                     44             25
                  vv
clus               LIFELONG NON-SMOKER
  OR4C16 MUTATED                     1
  OR4C16 WILD-TYPE                  23
D12V12, multiclass
                                             clus
vv                                            OR4C16 MUTATED OR4C16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1               23
D12V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR4C16 MUTATED    6  0  0  1
  OR4C16 WILD-TYPE 96  5  4  9
D12V14, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(13) Variable = ZNF676 MUTATION ANALYSIS
D13V1, survival
                  sevent
clus2               0  1
  ZNF676 MUTATED    9  5
  ZNF676 WILD-TYPE 90 45
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              14              135 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               5               45 
$`ZNF676 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-38-4631 TCGA-44-6144 
       19.92        14.93         8.98        30.02        11.64         0.30 
TCGA-44-6777 TCGA-50-5931 TCGA-55-1595 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 
       32.45         8.78        48.62         2.86        39.52         1.97 
TCGA-73-4658 TCGA-73-4668 
       52.57        15.35 

$`ZNF676 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4420 TCGA-05-4426 
       47.05         8.02        20.05         2.96        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ZNF676 MUTATED ZNF676 WILD-TYPE 
            0.30             0.07 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           52.57            85.32 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           15.14            13.15 
[1] "0.3 - 52.6 (15.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
D13V3, binary
                  cls
clus                0  1
  ZNF676 MUTATED    9  7
  ZNF676 WILD-TYPE 84 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      9    7
  ZNF676 WILD-TYPE   84   72
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  FEMALE              9               84
  MALE                7               72
D13V4, continuous
[1] "Remove cluster labels:" "ZNF676 MUTATED"        
clus
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF676 MUTATED                            0                                 5
  ZNF676 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF676 MUTATED                                                    9
  ZNF676 WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF676 MUTATED                                            0
  ZNF676 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF676 MUTATED                                               0
  ZNF676 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF676 MUTATED                                1
  ZNF676 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF676 MUTATED                                    1
  ZNF676 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF676 MUTATED                              0                             0
  ZNF676 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF676 MUTATED                                               0
  ZNF676 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  ZNF676 MUTATED                                   0
  ZNF676 WILD-TYPE                                 2
D13V5, multiclass
                  vv
clus               T1 T2 T3 T4
  ZNF676 MUTATED    4 10  2  0
  ZNF676 WILD-TYPE 37 98 12  8
D13V6, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  T1              4               37
  T2             10               98
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ZNF676 MUTATED   10  2     3
  ZNF676 WILD-TYPE 85 35    32
D13V7, multiclass
       clus
vv      ZNF676 MUTATED ZNF676 WILD-TYPE
  N0                10               85
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  ZNF676 MUTATED    14   1   1
  ZNF676 WILD-TYPE 123   8  21
D13V8, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  M0             14              123
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  ZNF676 MUTATED   11  2   2  1
  ZNF676 WILD-TYPE 77 31  37  8
D13V9, multiclass
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  I               11               77
  II               2               31
  III              2               37
  IV               1                8
D13V10, binary
                  cls
clus                 0   1
  ZNF676 MUTATED     1  15
  ZNF676 WILD-TYPE  15 141
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      1   15
  ZNF676 WILD-TYPE   15  141
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  NO               1               15
  YES             15              141
D13V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF676 MUTATED                                            10
  ZNF676 WILD-TYPE                                          52
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF676 MUTATED                                        2              3
  ZNF676 WILD-TYPE                                     44             25
                  vv
clus               LIFELONG NON-SMOKER
  ZNF676 MUTATED                     0
  ZNF676 WILD-TYPE                  24
D13V12, multiclass
                                             clus
vv                                            ZNF676 MUTATED ZNF676 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D13V13, continuous
                  vv
clus               R0 R1 R2 RX
  ZNF676 MUTATED   10  1  0  2
  ZNF676 WILD-TYPE 92  4  4  8
D13V14, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  R0             10               92
  R1              1                4
  R2              0                4
  RX              2                8

Clustering(14) Variable = EPHA6 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED   15  6
  EPHA6 WILD-TYPE 84 44
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             21             128 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              6              44 
$`EPHA6 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96         8.98        29.95        30.02        26.01 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6778 TCGA-49-4494 TCGA-50-5066 
       49.02        19.10         8.09        36.49        35.54         9.76 
TCGA-50-5942 TCGA-55-1595 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 
        4.44        48.62        30.44        16.67         1.97         2.04 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4677 
       23.38        29.95         1.25 

$`EPHA6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4426 TCGA-05-4430 
        8.02        20.05         2.96        14.93        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
       39.52         7.33         0.99         0.59         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        0.69        13.87         2.01        52.57        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           1.25            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          49.02           85.32 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          19.92           13.07 
[1] "1.2 - 49.0 (19.9)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
                 cls
clus               0  1
  EPHA6 MUTATED    8 14
  EPHA6 WILD-TYPE 85 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      8   14
  EPHA6 WILD-TYPE   85   65
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             8              85
  MALE              14              65
D14V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHA6 MUTATED                            1                                 7
  EPHA6 WILD-TYPE                          1                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHA6 MUTATED                                                   11
  EPHA6 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHA6 MUTATED                                            0
  EPHA6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHA6 MUTATED                                               1
  EPHA6 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHA6 MUTATED                                1
  EPHA6 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                                    0
  EPHA6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                              0                             1
  EPHA6 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHA6 MUTATED                                               0
  EPHA6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  EPHA6 MUTATED                                   0
  EPHA6 WILD-TYPE                                 2
D14V5, multiclass
                 vv
clus              T1 T2 T3 T4
  EPHA6 MUTATED    5 12  4  1
  EPHA6 WILD-TYPE 36 96 10  7
D14V6, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  T1             5              36
  T2            12              96
  T3             4              10
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  EPHA6 MUTATED   14  3     5
  EPHA6 WILD-TYPE 81 34    30
D14V7, multiclass
       clus
vv      EPHA6 MUTATED EPHA6 WILD-TYPE
  N0               14              81
  N1                3              34
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  EPHA6 MUTATED    21   0   1
  EPHA6 WILD-TYPE 116   9  21
D14V8, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            21             116
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  EPHA6 MUTATED   12  3   6  0
  EPHA6 WILD-TYPE 76 30  33  9
D14V9, multiclass
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  I              12              76
  II              3              30
  III             6              33
  IV              0               9
D14V10, binary
                 cls
clus                0   1
  EPHA6 MUTATED     2  20
  EPHA6 WILD-TYPE  14 136
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   14  136
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              14
  YES            20             136
D14V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EPHA6 MUTATED                                            12
  EPHA6 WILD-TYPE                                          50
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EPHA6 MUTATED                                        6              2
  EPHA6 WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  EPHA6 MUTATED                     2
  EPHA6 WILD-TYPE                  22
D14V12, multiclass
                                             clus
vv                                            EPHA6 MUTATED EPHA6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D14V13, continuous
                 vv
clus              R0 R1 R2 RX
  EPHA6 MUTATED   16  1  1  0
  EPHA6 WILD-TYPE 86  4  3 10
D14V14, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  R0            16              86
  R1             1               4
  R2             1               3
  RX             0              10

Clustering(15) Variable = RIMS2 MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   15 14
  RIMS2 WILD-TYPE 84 36
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             29             120 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             14              36 
$`RIMS2 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4415 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 
       38.07        19.92         2.96        49.02        35.28        44.61 
TCGA-44-2656 TCGA-44-6778 TCGA-49-4510 TCGA-49-6742 TCGA-50-5049 TCGA-50-5066 
       19.10        36.49        29.46        15.02        48.82         9.76 
TCGA-50-5932 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 
       35.87        77.88        42.31        11.05        23.05         2.86 
TCGA-64-1677 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       20.65         0.10        39.52         7.33         0.99         1.97 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-91-6828 TCGA-91-6836 
       52.57        23.38        20.28         1.22         0.36 

$`RIMS2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       28.37        11.64         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        4.44        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
        6.21        33.37        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       30.44        16.67         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        0.69        13.87         2.01        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.10            0.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          77.88           85.32 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          20.65           12.46 
[1] "0.1 - 77.9 (20.6)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
                 cls
clus               0  1
  RIMS2 MUTATED   14 18
  RIMS2 WILD-TYPE 79 61
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     14   18
  RIMS2 WILD-TYPE   79   61
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE            14              79
  MALE              18              61
D15V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIMS2 MUTATED                            0                                 6
  RIMS2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIMS2 MUTATED                                                   23
  RIMS2 WILD-TYPE                                                 91
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIMS2 MUTATED                                            0
  RIMS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RIMS2 MUTATED                                0
  RIMS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                                    0
  RIMS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                              0                             2
  RIMS2 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  RIMS2 MUTATED                                   1
  RIMS2 WILD-TYPE                                 1
D15V5, multiclass
                 vv
clus              T1 T2 T3 T4
  RIMS2 MUTATED    7 20  2  3
  RIMS2 WILD-TYPE 34 88 12  5
D15V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             7              34
  T2            20              88
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  RIMS2 MUTATED   18  8     6
  RIMS2 WILD-TYPE 77 29    29
D15V7, multiclass
       clus
vv      RIMS2 MUTATED RIMS2 WILD-TYPE
  N0               18              77
  N1                8              29
  N2+N3             6              29
                 vv
clus               M0  M1  MX
  RIMS2 MUTATED    24   2   5
  RIMS2 WILD-TYPE 113   7  17
D15V8, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            24             113
  M1             2               7
  MX             5              17
                 vv
clus               I II III IV
  RIMS2 MUTATED   16  7   7  2
  RIMS2 WILD-TYPE 72 26  32  7
D15V9, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I              16              72
  II              7              26
  III             7              32
  IV              2               7
D15V10, binary
                 cls
clus                0   1
  RIMS2 MUTATED     3  29
  RIMS2 WILD-TYPE  13 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   29
  RIMS2 WILD-TYPE   13  127
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              3              13
  YES            29             127
D15V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RIMS2 MUTATED                                            12
  RIMS2 WILD-TYPE                                          50
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RIMS2 MUTATED                                        8              6
  RIMS2 WILD-TYPE                                     38             22
                 vv
clus              LIFELONG NON-SMOKER
  RIMS2 MUTATED                     3
  RIMS2 WILD-TYPE                  21
D15V12, multiclass
                                             clus
vv                                            RIMS2 MUTATED RIMS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          6              22
  LIFELONG NON-SMOKER                                     3              21
D15V13, continuous
                 vv
clus              R0 R1 R2 RX
  RIMS2 MUTATED   20  1  1  0
  RIMS2 WILD-TYPE 82  4  3 10
D15V14, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  R0            20              82
  R1             1               4
  R2             1               3
  RX             0              10

Clustering(16) Variable = OR2L3 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  OR2L3 MUTATED   10  3
  OR2L3 WILD-TYPE 89 47
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             136 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              3              47 
$`OR2L3 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 
        3.98        19.92         9.96        26.01        25.02         8.68 
TCGA-44-2656 TCGA-44-2668 TCGA-44-6145 TCGA-55-1596 TCGA-55-6712 TCGA-91-6828 
       19.10         8.09         3.35        45.17         0.79         1.22 
TCGA-91-6829 
       41.33 

$`OR2L3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.28         1.15         0.36 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
           0.79            0.07 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          45.17           85.32 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
           9.96           13.94 
[1] "0.8 - 45.2 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                 cls
clus               0  1
  OR2L3 MUTATED    3 10
  OR2L3 WILD-TYPE 90 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      3   10
  OR2L3 WILD-TYPE   90   69
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             3              90
  MALE              10              69
D16V4, continuous
[1] "Remove cluster labels:" "OR2L3 MUTATED"         
clus
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2L3 MUTATED                            0                                 4
  OR2L3 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2L3 MUTATED                                                    8
  OR2L3 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2L3 MUTATED                                            0
  OR2L3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2L3 MUTATED                                               1
  OR2L3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2L3 MUTATED                                0
  OR2L3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2L3 MUTATED                                    0
  OR2L3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2L3 MUTATED                              0                             0
  OR2L3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2L3 MUTATED                                               0
  OR2L3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2L3 MUTATED                                   0
  OR2L3 WILD-TYPE                                 2
D16V5, multiclass
                 vv
clus              T1 T2 T3 T4
  OR2L3 MUTATED    2  9  1  1
  OR2L3 WILD-TYPE 39 99 13  7
D16V6, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR2L3 MUTATED    6  6     1
  OR2L3 WILD-TYPE 89 31    34
D16V7, multiclass
       clus
vv      OR2L3 MUTATED OR2L3 WILD-TYPE
  N0                6              89
  N1                6              31
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR2L3 MUTATED    10   0   3
  OR2L3 WILD-TYPE 127   9  19
D16V8, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             3              19
                 vv
clus               I II III IV
  OR2L3 MUTATED    6  3   3  0
  OR2L3 WILD-TYPE 82 30  36  9
D16V9, multiclass
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  I               6              82
  II              3              30
  III             3              36
  IV              0               9
D16V10, binary
                 cls
clus                0   1
  OR2L3 MUTATED     0  13
  OR2L3 WILD-TYPE  16 143
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      0   13
  OR2L3 WILD-TYPE   16  143
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  NO              0              16
  YES            13             143
D16V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2L3 MUTATED                                             9
  OR2L3 WILD-TYPE                                          53
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2L3 MUTATED                                        2              2
  OR2L3 WILD-TYPE                                     44             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2L3 MUTATED                     0
  OR2L3 WILD-TYPE                  24
D16V12, multiclass
                                             clus
vv                                            OR2L3 MUTATED OR2L3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D16V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR2L3 MUTATED    7  0  1  0
  OR2L3 WILD-TYPE 95  5  3 10
D16V14, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  R0             7              95
  R1             0               5
  R2             1               3
  RX             0              10

Clustering(17) Variable = ELTD1 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    5  7
  ELTD1 WILD-TYPE 94 43
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             12             137 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              7              43 
$`ELTD1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4427 TCGA-44-2656 TCGA-49-4494 TCGA-49-6743 
        3.98         9.96        26.01        19.10        35.54        12.13 
TCGA-50-5072 TCGA-50-6590 TCGA-50-6594 TCGA-64-1677 TCGA-73-4668 TCGA-91-6829 
        8.05        42.31        12.16        20.65        15.35        41.33 

$`ELTD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           3.98            0.07 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          42.31           85.32 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         17.225          13.150 
[1] "4.0 - 42.3 (17.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
[1] "hr=" "2"  
D17V2, continuous
D17V3, binary
                 cls
clus               0  1
  ELTD1 MUTATED    9  6
  ELTD1 WILD-TYPE 84 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      9    6
  ELTD1 WILD-TYPE   84   73
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D17V4, continuous
[1] "Remove cluster labels:" "ELTD1 MUTATED"         
clus
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ELTD1 MUTATED                            0                                 2
  ELTD1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                   10
  ELTD1 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ELTD1 MUTATED                                            0
  ELTD1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ELTD1 MUTATED                                               1
  ELTD1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ELTD1 MUTATED                                1
  ELTD1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                                    1
  ELTD1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                              0                             0
  ELTD1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ELTD1 MUTATED                                               0
  ELTD1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  ELTD1 MUTATED                                   0
  ELTD1 WILD-TYPE                                 2
D17V5, multiclass
                 vv
clus              T1 T2 T3 T4
  ELTD1 MUTATED    1  9  4  1
  ELTD1 WILD-TYPE 40 99 10  7
D17V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             1              40
  T2             9              99
  T3             4              10
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ELTD1 MUTATED    5  5     5
  ELTD1 WILD-TYPE 90 32    30
D17V7, multiclass
       clus
vv      ELTD1 MUTATED ELTD1 WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    12   0   3
  ELTD1 WILD-TYPE 125   9  19
D17V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             3              19
                 vv
clus               I II III IV
  ELTD1 MUTATED    4  4   7  0
  ELTD1 WILD-TYPE 84 29  32  9
D17V9, multiclass
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  I               4              84
  II              4              29
  III             7              32
  IV              0               9
D17V10, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  14
  ELTD1 WILD-TYPE  15 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   14
  ELTD1 WILD-TYPE   15  142
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              1              15
  YES            14             142
D17V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ELTD1 MUTATED                                             8
  ELTD1 WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ELTD1 MUTATED                                        4              3
  ELTD1 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  ELTD1 MUTATED                     0
  ELTD1 WILD-TYPE                  24
D17V12, multiclass
                                             clus
vv                                            ELTD1 MUTATED ELTD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D17V13, continuous
                 vv
clus              R0 R1 R2 RX
  ELTD1 MUTATED    8  0  1  0
  ELTD1 WILD-TYPE 94  5  3 10
D17V14, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             1               3
  RX             0              10

Clustering(18) Variable = CD5L MUTATION ANALYSIS
D18V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    6  4
  CD5L WILD-TYPE 93 46
  CD5L MUTATED CD5L WILD-TYPE 
            10            139 
  CD5L MUTATED CD5L WILD-TYPE 
             4             46 
$`CD5L MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-49-4488 TCGA-50-5072 
       19.92         9.96        24.03        19.10        28.57         8.05 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5778 TCGA-67-6215 
       77.88         9.37        30.44         0.89 

$`CD5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CD5L MUTATED CD5L WILD-TYPE 
          0.89           0.07 
  CD5L MUTATED CD5L WILD-TYPE 
         77.88          85.32 
  CD5L MUTATED CD5L WILD-TYPE 
         19.51          13.15 
[1] "0.9 - 77.9 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, binary
                cls
clus              0  1
  CD5L MUTATED    4  8
  CD5L WILD-TYPE 89 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      4    8
  CD5L WILD-TYPE   89   71
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            4             89
  MALE              8             71
D18V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CD5L MUTATED                            0                                 4
  CD5L WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CD5L MUTATED                                                    7
  CD5L WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CD5L MUTATED                                            0
  CD5L WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CD5L MUTATED                                               1
  CD5L WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CD5L MUTATED                                0
  CD5L WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CD5L MUTATED                                    0
  CD5L WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CD5L MUTATED                              0                             0
  CD5L WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CD5L MUTATED                                               0
  CD5L WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  CD5L MUTATED                                   0
  CD5L WILD-TYPE                                 2
D18V5, multiclass
                vv
clus             T1 T2 T3 T4
  CD5L MUTATED    1  9  0  2
  CD5L WILD-TYPE 40 99 14  6
D18V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            2              6
                vv
clus             N0 N1 N2+N3
  CD5L MUTATED    7  2     3
  CD5L WILD-TYPE 88 35    32
D18V7, multiclass
       clus
vv      CD5L MUTATED CD5L WILD-TYPE
  N0               7             88
  N1               2             35
  N2+N3            3             32
                vv
clus              M0  M1  MX
  CD5L MUTATED    11   0   1
  CD5L WILD-TYPE 126   9  21
D18V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0           11            126
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  CD5L MUTATED    7  1   4  0
  CD5L WILD-TYPE 81 32  35  9
D18V9, multiclass
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  I              7             81
  II             1             32
  III            4             35
  IV             0              9
D18V10, binary
                cls
clus               0   1
  CD5L MUTATED     2  10
  CD5L WILD-TYPE  14 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      2   10
  CD5L WILD-TYPE   14  146
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             2             14
  YES           10            146
D18V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CD5L MUTATED                                             4
  CD5L WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CD5L MUTATED                                        3              3
  CD5L WILD-TYPE                                     43             25
                vv
clus             LIFELONG NON-SMOKER
  CD5L MUTATED                     1
  CD5L WILD-TYPE                  23
D18V12, multiclass
                                             clus
vv                                            CD5L MUTATED CD5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    1             23
D18V13, continuous
                vv
clus             R0 R1 R2 RX
  CD5L MUTATED    7  0  0  1
  CD5L WILD-TYPE 95  5  4  9
D18V14, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  R0            7             95
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(19) Variable = CNBD1 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    6  3
  CNBD1 WILD-TYPE 93 47
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              9             140 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              3              47 
$`CNBD1 MUTATED`
TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-49-6743 TCGA-50-5931 
       37.02        24.03        47.05        26.01        12.13         8.78 
TCGA-50-6594 TCGA-55-1595 TCGA-91-6831 
       12.16        48.62         1.28 

$`CNBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 
       38.07         3.98        19.92        14.01         9.96         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.28            0.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          48.62           85.32 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 48.6 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, binary
                 cls
clus               0  1
  CNBD1 MUTATED    8  2
  CNBD1 WILD-TYPE 85 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      8    2
  CNBD1 WILD-TYPE   85   77
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             8              85
  MALE               2              77
D19V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CNBD1 MUTATED                            0                                 4
  CNBD1 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNBD1 MUTATED                                                    4
  CNBD1 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CNBD1 MUTATED                                            0
  CNBD1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CNBD1 MUTATED                                               0
  CNBD1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CNBD1 MUTATED                                2
  CNBD1 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CNBD1 MUTATED                                    0
  CNBD1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CNBD1 MUTATED                              0                             0
  CNBD1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CNBD1 MUTATED                                               0
  CNBD1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  CNBD1 MUTATED                                   0
  CNBD1 WILD-TYPE                                 2
D19V5, multiclass
                 vv
clus               T1  T2  T3  T4
  CNBD1 MUTATED     2   6   1   1
  CNBD1 WILD-TYPE  39 102  13   7
D19V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  CNBD1 MUTATED    5  2     3
  CNBD1 WILD-TYPE 90 35    32
D19V7, multiclass
       clus
vv      CNBD1 MUTATED CNBD1 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  CNBD1 MUTATED     8   0   2
  CNBD1 WILD-TYPE 129   9  20
D19V8, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  CNBD1 MUTATED    5  2   3  0
  CNBD1 WILD-TYPE 83 31  36  9
D19V9, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D19V10, binary
                 cls
clus                0   1
  CNBD1 MUTATED     0  10
  CNBD1 WILD-TYPE  16 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      0   10
  CNBD1 WILD-TYPE   16  146
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              0              16
  YES            10             146
D19V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CNBD1 MUTATED                                             5
  CNBD1 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CNBD1 MUTATED                                        0              4
  CNBD1 WILD-TYPE                                     46             24
                 vv
clus              LIFELONG NON-SMOKER
  CNBD1 MUTATED                     0
  CNBD1 WILD-TYPE                  24
D19V12, multiclass
                                             clus
vv                                            CNBD1 MUTATED CNBD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D19V13, continuous
                 vv
clus              R0 R1 R2 RX
  CNBD1 MUTATED    5  0  0  0
  CNBD1 WILD-TYPE 97  5  4 10
D19V14, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(20) Variable = REG1B MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED   10  3
  REG1B WILD-TYPE 89 47
  REG1B MUTATED REG1B WILD-TYPE 
             13             136 
  REG1B MUTATED REG1B WILD-TYPE 
              3              47 
$`REG1B MUTATED`
TCGA-05-4417 TCGA-05-4427 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-44-2657 
       14.93        26.01         0.46         7.36         8.68        13.15 
TCGA-44-3918 TCGA-49-4510 TCGA-50-5045 TCGA-50-5049 TCGA-55-1592 TCGA-73-4668 
        6.44        29.46        71.47        48.82        23.05        15.35 
TCGA-73-4676 
        4.01 

$`REG1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       29.95        20.28         0.46         1.32         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  REG1B MUTATED REG1B WILD-TYPE 
           0.46            0.07 
  REG1B MUTATED REG1B WILD-TYPE 
          71.47           85.32 
  REG1B MUTATED REG1B WILD-TYPE 
          14.93           13.51 
[1] "0.5 - 71.5 (14.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
[1] "hr=" "1.5"
D20V2, continuous
D20V3, binary
                 cls
clus               0  1
  REG1B MUTATED    7  6
  REG1B WILD-TYPE 86 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      7    6
  REG1B WILD-TYPE   86   73
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             7              86
  MALE               6              73
D20V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  REG1B MUTATED                            0                                 2
  REG1B WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1B MUTATED                                                   10
  REG1B WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  REG1B MUTATED                                            0
  REG1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  REG1B MUTATED                                               0
  REG1B WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  REG1B MUTATED                                0
  REG1B WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  REG1B MUTATED                                    1
  REG1B WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  REG1B MUTATED                              0                             0
  REG1B WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  REG1B MUTATED                                               0
  REG1B WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  REG1B MUTATED                                   0
  REG1B WILD-TYPE                                 2
D20V5, multiclass
                 vv
clus              T1 T2 T3 T4
  REG1B MUTATED    2 11  0  0
  REG1B WILD-TYPE 39 97 14  8
D20V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             2              39
  T2            11              97
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  REG1B MUTATED    6  5     1
  REG1B WILD-TYPE 89 32    34
D20V7, multiclass
       clus
vv      REG1B MUTATED REG1B WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  REG1B MUTATED    13   0   0
  REG1B WILD-TYPE 124   9  22
D20V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            13             124
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  REG1B MUTATED    8  4   1  0
  REG1B WILD-TYPE 80 29  38  9
D20V9, multiclass
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  I               8              80
  II              4              29
  III             1              38
  IV              0               9
D20V10, binary
                 cls
clus                0   1
  REG1B MUTATED     3  10
  REG1B WILD-TYPE  13 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3   10
  REG1B WILD-TYPE   13  146
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              3              13
  YES            10             146
D20V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG1B MUTATED                                             8
  REG1B WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG1B MUTATED                                        1              1
  REG1B WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  REG1B MUTATED                     1
  REG1B WILD-TYPE                  23
D20V12, multiclass
                                             clus
vv                                            REG1B MUTATED REG1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D20V13, continuous
                 vv
clus              R0 R1 R2 RX
  REG1B MUTATED   11  0  0  0
  REG1B WILD-TYPE 91  5  4 10
D20V14, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  R0            11              91
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(21) Variable = REG3A MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    9  3
  REG3A WILD-TYPE 90 47
  REG3A MUTATED REG3A WILD-TYPE 
             12             137 
  REG3A MUTATED REG3A WILD-TYPE 
              3              47 
$`REG3A MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-44-2656 TCGA-44-2657 TCGA-44-3918 
        9.96        24.03        25.02        19.10        13.15         6.44 
TCGA-44-6775 TCGA-50-5941 TCGA-55-1595 TCGA-64-5779 TCGA-64-5781 TCGA-91-6829 
        2.70         9.37        48.62        16.67        39.52        41.33 

$`REG3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       18.87        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  REG3A MUTATED REG3A WILD-TYPE 
           2.70            0.07 
  REG3A MUTATED REG3A WILD-TYPE 
          48.62           85.32 
  REG3A MUTATED REG3A WILD-TYPE 
         17.885          13.150 
[1] "2.7 - 48.6 (17.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
[1] "hr=" "1.4"
D21V2, continuous
D21V3, binary
                 cls
clus               0  1
  REG3A MUTATED    6  8
  REG3A WILD-TYPE 87 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      6    8
  REG3A WILD-TYPE   87   71
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D21V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  REG3A MUTATED                            1                                 6
  REG3A WILD-TYPE                          1                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG3A MUTATED                                                    5
  REG3A WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  REG3A MUTATED                                            0
  REG3A WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  REG3A MUTATED                                               1
  REG3A WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  REG3A MUTATED                                1
  REG3A WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  REG3A MUTATED                                    0
  REG3A WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  REG3A MUTATED                              0                             0
  REG3A WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  REG3A MUTATED                                               0
  REG3A WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  REG3A MUTATED                                   0
  REG3A WILD-TYPE                                 2
D21V5, multiclass
                 vv
clus              T1 T2 T3 T4
  REG3A MUTATED    3 10  0  1
  REG3A WILD-TYPE 38 98 14  7
D21V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             3              38
  T2            10              98
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  REG3A MUTATED    7  4     2
  REG3A WILD-TYPE 88 33    33
D21V7, multiclass
       clus
vv      REG3A MUTATED REG3A WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  REG3A MUTATED    12   0   2
  REG3A WILD-TYPE 125   9  20
D21V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0            12             125
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  REG3A MUTATED    8  3   3  0
  REG3A WILD-TYPE 80 30  36  9
D21V9, multiclass
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  I               8              80
  II              3              30
  III             3              36
  IV              0               9
D21V10, binary
                 cls
clus                0   1
  REG3A MUTATED     0  14
  REG3A WILD-TYPE  16 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   14
  REG3A WILD-TYPE   16  142
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0              16
  YES            14             142
D21V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG3A MUTATED                                             8
  REG3A WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG3A MUTATED                                        3              3
  REG3A WILD-TYPE                                     43             25
                 vv
clus              LIFELONG NON-SMOKER
  REG3A MUTATED                     0
  REG3A WILD-TYPE                  24
D21V12, multiclass
                                             clus
vv                                            REG3A MUTATED REG3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D21V13, continuous
                 vv
clus              R0 R1 R2 RX
  REG3A MUTATED    8  0  0  2
  REG3A WILD-TYPE 94  5  4  8
D21V14, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             2               8

Clustering(22) Variable = OR2T4 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  OR2T4 MUTATED    4  6
  OR2T4 WILD-TYPE 95 44
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             10             139 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              6              44 
$`OR2T4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5423 TCGA-35-3615 TCGA-35-5375 TCGA-44-6777 
       19.92         9.96         4.96         0.46         8.68        32.45 
TCGA-49-4487 TCGA-50-6592 TCGA-50-6594 TCGA-64-1677 
       28.11        25.51        12.16        20.65 

$`OR2T4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
       15.02         1.02         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR2T4 MUTATED OR2T4 WILD-TYPE 
           0.46            0.07 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          32.45           85.32 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          16.04           13.87 
[1] "0.5 - 32.5 (16.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
[1] "hr=" "3.1"
D22V2, continuous
D22V3, binary
                 cls
clus               0  1
  OR2T4 MUTATED    6  7
  OR2T4 WILD-TYPE 87 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      6    7
  OR2T4 WILD-TYPE   87   72
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  FEMALE             6              87
  MALE               7              72
D22V4, continuous
[1] "Remove cluster labels:" "OR2T4 MUTATED"         
clus
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T4 MUTATED                            0                                 5
  OR2T4 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T4 MUTATED                                                    8
  OR2T4 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T4 MUTATED                                            0
  OR2T4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T4 MUTATED                                               0
  OR2T4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2T4 MUTATED                                0
  OR2T4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T4 MUTATED                                    0
  OR2T4 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T4 MUTATED                              0                             0
  OR2T4 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T4 MUTATED                                               0
  OR2T4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2T4 MUTATED                                   0
  OR2T4 WILD-TYPE                                 2
D22V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2T4 MUTATED     1   8   2   2
  OR2T4 WILD-TYPE  40 100  12   6
D22V6, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  T1             1              40
  T2             8             100
  T3             2              12
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  OR2T4 MUTATED    6  2     4
  OR2T4 WILD-TYPE 89 35    31
D22V7, multiclass
       clus
vv      OR2T4 MUTATED OR2T4 WILD-TYPE
  N0                6              89
  N1                2              35
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  OR2T4 MUTATED    11   0   2
  OR2T4 WILD-TYPE 126   9  20
D22V8, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  OR2T4 MUTATED    6  2   5  0
  OR2T4 WILD-TYPE 82 31  34  9
D22V9, multiclass
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  I               6              82
  II              2              31
  III             5              34
  IV              0               9
D22V10, binary
                 cls
clus                0   1
  OR2T4 MUTATED     1  12
  OR2T4 WILD-TYPE  15 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      1   12
  OR2T4 WILD-TYPE   15  144
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  NO              1              15
  YES            12             144
D22V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T4 MUTATED                                             7
  OR2T4 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T4 MUTATED                                        2              2
  OR2T4 WILD-TYPE                                     44             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2T4 MUTATED                     2
  OR2T4 WILD-TYPE                  22
D22V12, multiclass
                                             clus
vv                                            OR2T4 MUTATED OR2T4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D22V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR2T4 MUTATED    9  0  0  1
  OR2T4 WILD-TYPE 93  5  4  9
D22V14, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  R0             9              93
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(23) Variable = GABRB3 MUTATION ANALYSIS
D23V1, survival
                  sevent
clus2               0  1
  GABRB3 MUTATED    3  7
  GABRB3 WILD-TYPE 96 43
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              10              139 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               7               43 
$`GABRB3 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4631 TCGA-38-4632 TCGA-49-4486 TCGA-50-6590 
       19.92         9.96        11.64        44.61        76.21        42.31 
TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 TCGA-73-4677 
       23.05        16.67        20.28         1.25 

$`GABRB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GABRB3 MUTATED GABRB3 WILD-TYPE 
            1.25             0.07 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           76.21            85.32 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           20.10            13.15 
[1] "1.2 - 76.2 (20.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
[1] "hr=" "1.6"
D23V2, continuous
D23V3, binary
                  cls
clus                0  1
  GABRB3 MUTATED    4  7
  GABRB3 WILD-TYPE 89 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      4    7
  GABRB3 WILD-TYPE   89   72
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  FEMALE              4               89
  MALE                7               72
D23V4, continuous
[1] "Remove cluster labels:" "GABRB3 MUTATED"        
clus
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GABRB3 MUTATED                            1                                 2
  GABRB3 WILD-TYPE                          1                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRB3 MUTATED                                                    8
  GABRB3 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GABRB3 MUTATED                                            0
  GABRB3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GABRB3 MUTATED                                               0
  GABRB3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GABRB3 MUTATED                                0
  GABRB3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GABRB3 MUTATED                                    0
  GABRB3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GABRB3 MUTATED                              0                             0
  GABRB3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GABRB3 MUTATED                                               0
  GABRB3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  GABRB3 MUTATED                                   0
  GABRB3 WILD-TYPE                                 2
D23V5, multiclass
                  vv
clus                T1  T2  T3  T4
  GABRB3 MUTATED     2   8   0   1
  GABRB3 WILD-TYPE  39 100  14   7
D23V6, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  T1              2               39
  T2              8              100
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  GABRB3 MUTATED    8  2     1
  GABRB3 WILD-TYPE 87 35    34
D23V7, multiclass
       clus
vv      GABRB3 MUTATED GABRB3 WILD-TYPE
  N0                 8               87
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  GABRB3 MUTATED     9   2   0
  GABRB3 WILD-TYPE 128   7  22
D23V8, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  M0              9              128
  M1              2                7
  MX              0               22
                  vv
clus                I II III IV
  GABRB3 MUTATED    7  0   2  2
  GABRB3 WILD-TYPE 81 33  37  7
D23V9, multiclass
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               2                7
D23V10, binary
                  cls
clus                 0   1
  GABRB3 MUTATED     1  10
  GABRB3 WILD-TYPE  15 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      1   10
  GABRB3 WILD-TYPE   15  146
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  NO               1               15
  YES             10              146
D23V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRB3 MUTATED                                             7
  GABRB3 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRB3 MUTATED                                        3              1
  GABRB3 WILD-TYPE                                     43             27
                  vv
clus               LIFELONG NON-SMOKER
  GABRB3 MUTATED                     0
  GABRB3 WILD-TYPE                  24
D23V12, multiclass
                                             clus
vv                                            GABRB3 MUTATED GABRB3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D23V13, continuous
                  vv
clus               R0 R1 R2 RX
  GABRB3 MUTATED   10  0  0  0
  GABRB3 WILD-TYPE 92  5  4 10
D23V14, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  R0             10               92
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(24) Variable = TRIM58 MUTATION ANALYSIS
D24V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    4  3
  TRIM58 WILD-TYPE 95 47
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               7              142 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               3               47 
$`TRIM58 MUTATED`
TCGA-05-5429 TCGA-44-2655 TCGA-44-6778 TCGA-49-4488 TCGA-50-6590 TCGA-50-6592 
        0.99        18.87        36.49        28.57        42.31        25.51 
TCGA-67-3774 
        0.59 

$`TRIM58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       63.72        32.45        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.59             0.07 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           42.31            85.32 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           25.51            13.15 
[1] "0.6 - 42.3 (25.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
                  cls
clus                0  1
  TRIM58 MUTATED    5  3
  TRIM58 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5    3
  TRIM58 WILD-TYPE   88   76
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D24V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TRIM58 MUTATED                            0                                 0
  TRIM58 WILD-TYPE                          2                                39
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRIM58 MUTATED                                                    8
  TRIM58 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TRIM58 MUTATED                                            0
  TRIM58 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TRIM58 MUTATED                                               0
  TRIM58 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  TRIM58 MUTATED                                0
  TRIM58 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  TRIM58 MUTATED                                    0
  TRIM58 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TRIM58 MUTATED                              0                             0
  TRIM58 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TRIM58 MUTATED                                               0
  TRIM58 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  TRIM58 MUTATED                                   0
  TRIM58 WILD-TYPE                                 2
D24V5, multiclass
                  vv
clus                T1  T2  T3  T4
  TRIM58 MUTATED     3   4   1   0
  TRIM58 WILD-TYPE  38 104  13   8
D24V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              3               38
  T2              4              104
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  TRIM58 MUTATED    6  1     1
  TRIM58 WILD-TYPE 89 36    34
D24V7, multiclass
       clus
vv      TRIM58 MUTATED TRIM58 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  TRIM58 MUTATED     6   0   2
  TRIM58 WILD-TYPE 131   9  20
D24V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  TRIM58 MUTATED    6  1   1  0
  TRIM58 WILD-TYPE 82 32  38  9
D24V9, multiclass
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D24V10, binary
                  cls
clus                 0   1
  TRIM58 MUTATED     0   8
  TRIM58 WILD-TYPE  16 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0    8
  TRIM58 WILD-TYPE   16  148
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0               16
  YES              8              148
D24V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TRIM58 MUTATED                                             3
  TRIM58 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TRIM58 MUTATED                                        4              0
  TRIM58 WILD-TYPE                                     42             28
                  vv
clus               LIFELONG NON-SMOKER
  TRIM58 MUTATED                     1
  TRIM58 WILD-TYPE                  23
D24V12, multiclass
                                             clus
vv                                            TRIM58 MUTATED TRIM58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D24V13, continuous
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2656 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6779       TCGA-49-4486 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  TRIM58 MUTATED    4  0  0  0
  TRIM58 WILD-TYPE 98  5  4 10
D24V14, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  R0              4               98
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(25) Variable = BAGE2 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    2  5
  BAGE2 WILD-TYPE 97 45
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             142 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              5              45 
$`BAGE2 MUTATED`
TCGA-05-4397 TCGA-50-5931 TCGA-50-5933 TCGA-50-6591 TCGA-50-6592 TCGA-64-5781 
       24.03         8.78        77.88         3.88        25.51        39.52 
TCGA-91-6831 
        1.28 

$`BAGE2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       12.26        11.47        42.31        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           1.28            0.07 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          77.88           85.32 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 77.9 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
[1] "hr=" "1.5"
D25V2, continuous
D25V3, binary
                 cls
clus               0  1
  BAGE2 MUTATED    4  5
  BAGE2 WILD-TYPE 89 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      4    5
  BAGE2 WILD-TYPE   89   74
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             4              89
  MALE               5              74
D25V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BAGE2 MUTATED                            0                                 2
  BAGE2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BAGE2 MUTATED                                                    6
  BAGE2 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BAGE2 MUTATED                                            0
  BAGE2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BAGE2 MUTATED                                               0
  BAGE2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  BAGE2 MUTATED                                0
  BAGE2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  BAGE2 MUTATED                                    0
  BAGE2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BAGE2 MUTATED                              0                             0
  BAGE2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BAGE2 MUTATED                                               1
  BAGE2 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  BAGE2 MUTATED                                   0
  BAGE2 WILD-TYPE                                 2
D25V5, multiclass
                 vv
clus               T1  T2  T3  T4
  BAGE2 MUTATED     0   7   1   1
  BAGE2 WILD-TYPE  41 101  13   7
D25V6, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  BAGE2 MUTATED    7  1     1
  BAGE2 WILD-TYPE 88 36    34
D25V7, multiclass
       clus
vv      BAGE2 MUTATED BAGE2 WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  BAGE2 MUTATED     7   1   1
  BAGE2 WILD-TYPE 130   8  21
D25V8, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             1              21
                 vv
clus               I II III IV
  BAGE2 MUTATED    6  1   1  1
  BAGE2 WILD-TYPE 82 32  38  8
D25V9, multiclass
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  I               6              82
  II              1              32
  III             1              38
  IV              1               8
D25V10, binary
                 cls
clus                0   1
  BAGE2 MUTATED     1   8
  BAGE2 WILD-TYPE  15 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      1    8
  BAGE2 WILD-TYPE   15  148
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              1              15
  YES             8             148
D25V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BAGE2 MUTATED                                             4
  BAGE2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BAGE2 MUTATED                                        0              2
  BAGE2 WILD-TYPE                                     46             26
                 vv
clus              LIFELONG NON-SMOKER
  BAGE2 MUTATED                     1
  BAGE2 WILD-TYPE                  23
D25V12, multiclass
                                             clus
vv                                            BAGE2 MUTATED BAGE2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D25V13, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-73-4659      TCGA-73-4662 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  BAGE2 MUTATED    4  0  0  0
  BAGE2 WILD-TYPE 98  5  4 10
D25V14, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(26) Variable = OR4A5 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  OR4A5 MUTATED    8  4
  OR4A5 WILD-TYPE 91 46
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             137 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              4              46 
$`OR4A5 MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2659 TCGA-44-3396 TCGA-49-6743 TCGA-49-6744 
        8.68        11.64        17.39        10.22        12.13        12.99 
TCGA-50-5930 TCGA-50-6594 TCGA-64-1677 TCGA-67-6215 TCGA-73-4670 TCGA-91-6836 
        9.27        12.16        20.65         0.89         0.46         0.36 

$`OR4A5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        43.20        15.02         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  OR4A5 MUTATED OR4A5 WILD-TYPE 
           0.36            0.07 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          20.65           85.32 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          10.93           14.96 
[1] "0.4 - 20.6 (10.9)" "0.1 - 85.3 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
[1] "hr=" "3"  
D26V2, continuous
D26V3, binary
                 cls
clus               0  1
  OR4A5 MUTATED   10  2
  OR4A5 WILD-TYPE 83 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED     10    2
  OR4A5 WILD-TYPE   83   77
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  FEMALE            10              83
  MALE               2              77
D26V4, continuous
[1] "Remove cluster labels:" "OR4A5 MUTATED"         
clus
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4A5 MUTATED                            0                                 2
  OR4A5 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4A5 MUTATED                                                    9
  OR4A5 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4A5 MUTATED                                            0
  OR4A5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4A5 MUTATED                                               0
  OR4A5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR4A5 MUTATED                                1
  OR4A5 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4A5 MUTATED                                    0
  OR4A5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4A5 MUTATED                              0                             0
  OR4A5 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4A5 MUTATED                                               0
  OR4A5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4A5 MUTATED                                   0
  OR4A5 WILD-TYPE                                 2
D26V5, multiclass
                 vv
clus              T1 T2 T3 T4
  OR4A5 MUTATED    2  9  1  0
  OR4A5 WILD-TYPE 39 99 13  8
D26V6, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR4A5 MUTATED    4  2     6
  OR4A5 WILD-TYPE 91 35    29
D26V7, multiclass
       clus
vv      OR4A5 MUTATED OR4A5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             6              29
                 vv
clus               M0  M1  MX
  OR4A5 MUTATED     8   1   3
  OR4A5 WILD-TYPE 129   8  19
D26V8, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  M0             8             129
  M1             1               8
  MX             3              19
                 vv
clus               I II III IV
  OR4A5 MUTATED    3  2   6  1
  OR4A5 WILD-TYPE 85 31  33  8
D26V9, multiclass
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  I               3              85
  II              2              31
  III             6              33
  IV              1               8
D26V10, binary
                 cls
clus                0   1
  OR4A5 MUTATED     1  11
  OR4A5 WILD-TYPE  15 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      1   11
  OR4A5 WILD-TYPE   15  145
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  NO              1              15
  YES            11             145
D26V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4A5 MUTATED                                             7
  OR4A5 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4A5 MUTATED                                        0              3
  OR4A5 WILD-TYPE                                     46             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4A5 MUTATED                     1
  OR4A5 WILD-TYPE                  23
D26V12, multiclass
                                             clus
vv                                            OR4A5 MUTATED OR4A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D26V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR4A5 MUTATED    7  0  0  1
  OR4A5 WILD-TYPE 95  5  4  9
D26V14, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  R0             7              95
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(27) Variable = BRAF MUTATION ANALYSIS
D27V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    7  4
  BRAF WILD-TYPE 92 46
  BRAF MUTATED BRAF WILD-TYPE 
            11            138 
  BRAF MUTATED BRAF WILD-TYPE 
             4             46 
$`BRAF MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-44-2662 TCGA-44-2666 TCGA-44-3918 TCGA-44-6774 
       38.07        19.92        15.78         3.19         6.44         5.42 
TCGA-50-5044 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-6594 
       20.48        77.88         9.37         4.44        12.16 

$`BRAF WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
        8.78        35.87        21.47         8.45        15.12        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  BRAF MUTATED BRAF WILD-TYPE 
          3.19           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         77.88          85.32 
  BRAF MUTATED BRAF WILD-TYPE 
         12.16          13.94 
[1] "3.2 - 77.9 (12.2)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
[1] "hr=" "1"  
D27V2, continuous
D27V3, binary
                cls
clus              0  1
  BRAF MUTATED    6  9
  BRAF WILD-TYPE 87 70
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    9
  BRAF WILD-TYPE   87   70
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            6             87
  MALE              9             70
D27V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRAF MUTATED                            0                                 4
  BRAF WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRAF MUTATED                                                   11
  BRAF WILD-TYPE                                                103
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRAF MUTATED                                            0
  BRAF WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BRAF MUTATED                                0
  BRAF WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BRAF MUTATED                                    0
  BRAF WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BRAF MUTATED                              0                             0
  BRAF WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  BRAF MUTATED                                   0
  BRAF WILD-TYPE                                 2
D27V5, multiclass
                vv
clus              T1  T2  T3  T4
  BRAF MUTATED     5   7   1   2
  BRAF WILD-TYPE  36 101  13   6
D27V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            5             36
  T2            7            101
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  BRAF MUTATED    9  2     4
  BRAF WILD-TYPE 86 35    31
D27V7, multiclass
       clus
vv      BRAF MUTATED BRAF WILD-TYPE
  N0               9             86
  N1               2             35
  N2+N3            4             31
                vv
clus              M0  M1  MX
  BRAF MUTATED    15   0   0
  BRAF WILD-TYPE 122   9  22
D27V8, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           15            122
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  BRAF MUTATED    8  1   5  0
  BRAF WILD-TYPE 80 32  34  9
D27V9, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              8             80
  II             1             32
  III            5             34
  IV             0              9
D27V10, binary
                cls
clus               0   1
  BRAF MUTATED     2  13
  BRAF WILD-TYPE  14 143
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2   13
  BRAF WILD-TYPE   14  143
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             2             14
  YES           13            143
D27V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BRAF MUTATED                                             4
  BRAF WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BRAF MUTATED                                        6              3
  BRAF WILD-TYPE                                     40             25
                vv
clus             LIFELONG NON-SMOKER
  BRAF MUTATED                     0
  BRAF WILD-TYPE                  24
D27V12, multiclass
                                             clus
vv                                            BRAF MUTATED BRAF WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6             40
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0             24
D27V13, continuous
                vv
clus             R0 R1 R2 RX
  BRAF MUTATED    8  0  0  1
  BRAF WILD-TYPE 94  5  4  9
D27V14, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  R0            8             94
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(28) Variable = OR2L8 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  OR2L8 MUTATED    9  3
  OR2L8 WILD-TYPE 90 47
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             137 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              3              47 
$`OR2L8 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-35-4123 TCGA-38-4626 TCGA-38-4629 
       19.92         9.96        26.01         5.95        85.32        28.37 
TCGA-44-2662 TCGA-44-3918 TCGA-49-4488 TCGA-50-5066 TCGA-55-1596 TCGA-64-1676 
       15.78         6.44        28.57         9.76        45.17        56.81 

$`OR2L8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        7.36         8.68        47.61        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR2L8 MUTATED OR2L8 WILD-TYPE 
           5.95            0.07 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
          85.32           83.84 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
         22.965          13.150 
[1] "6.0 - 85.3 (23.0)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
[1] "hr=" "2.2"
D28V2, continuous
D28V3, binary
                 cls
clus               0  1
  OR2L8 MUTATED    4  8
  OR2L8 WILD-TYPE 89 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      4    8
  OR2L8 WILD-TYPE   89   71
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  FEMALE             4              89
  MALE               8              71
D28V4, continuous
[1] "Remove cluster labels:" "OR2L8 MUTATED"         
clus
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2L8 MUTATED                            0                                 4
  OR2L8 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2L8 MUTATED                                                    8
  OR2L8 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2L8 MUTATED                                            0
  OR2L8 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2L8 MUTATED                                               0
  OR2L8 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2L8 MUTATED                                0
  OR2L8 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2L8 MUTATED                                    0
  OR2L8 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2L8 MUTATED                              0                             0
  OR2L8 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2L8 MUTATED                                               0
  OR2L8 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2L8 MUTATED                                   0
  OR2L8 WILD-TYPE                                 2
D28V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2L8 MUTATED     4   6   1   1
  OR2L8 WILD-TYPE  37 102  13   7
D28V6, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR2L8 MUTATED    9  3     0
  OR2L8 WILD-TYPE 86 34    35
D28V7, multiclass
       clus
vv      OR2L8 MUTATED OR2L8 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR2L8 MUTATED    11   0   1
  OR2L8 WILD-TYPE 126   9  21
D28V8, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR2L8 MUTATED    7  4   1  0
  OR2L8 WILD-TYPE 81 29  38  9
D28V9, multiclass
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  I               7              81
  II              4              29
  III             1              38
  IV              0               9
D28V10, binary
                 cls
clus                0   1
  OR2L8 MUTATED     0  12
  OR2L8 WILD-TYPE  16 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      0   12
  OR2L8 WILD-TYPE   16  144
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  NO              0              16
  YES            12             144
D28V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2L8 MUTATED                                             4
  OR2L8 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2L8 MUTATED                                        4              3
  OR2L8 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  OR2L8 MUTATED                     1
  OR2L8 WILD-TYPE                  23
D28V12, multiclass
                                             clus
vv                                            OR2L8 MUTATED OR2L8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D28V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR2L8 MUTATED   12  0  0  0
  OR2L8 WILD-TYPE 90  5  4 10
D28V14, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  R0            12              90
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(29) Variable = CRIPAK MUTATION ANALYSIS
D29V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    5  2
  CRIPAK WILD-TYPE 94 48
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               7              142 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               2               48 
$`CRIPAK MUTATED`
TCGA-05-4396 TCGA-05-5425 TCGA-05-5715 TCGA-44-2668 TCGA-44-3396 TCGA-44-6148 
        9.96         2.96         2.04         8.09        10.22         3.12 
TCGA-50-6594 
       12.16 

$`CRIPAK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 
       24.00        15.02         1.02         4.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            2.04             0.07 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           12.16            85.32 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           8.090           14.945 
[1] "2.0 - 12.2 (8.1)"  "0.1 - 85.3 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
[1] "hr=" "4"  
D29V2, continuous
D29V3, binary
                  cls
clus                0  1
  CRIPAK MUTATED    4  7
  CRIPAK WILD-TYPE 89 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      4    7
  CRIPAK WILD-TYPE   89   72
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              4               89
  MALE                7               72
D29V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CRIPAK MUTATED                            0                                 4
  CRIPAK WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CRIPAK MUTATED                                                    5
  CRIPAK WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CRIPAK MUTATED                                            0
  CRIPAK WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CRIPAK MUTATED                                               0
  CRIPAK WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CRIPAK MUTATED                                0
  CRIPAK WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                                    0
  CRIPAK WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                              1                             0
  CRIPAK WILD-TYPE                            1                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CRIPAK MUTATED                                               1
  CRIPAK WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CRIPAK MUTATED                                   0
  CRIPAK WILD-TYPE                                 2
D29V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CRIPAK MUTATED     1   8   1   1
  CRIPAK WILD-TYPE  40 100  13   7
D29V6, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  T1              1               40
  T2              8              100
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CRIPAK MUTATED    7  2     2
  CRIPAK WILD-TYPE 88 35    33
D29V7, multiclass
       clus
vv      CRIPAK MUTATED CRIPAK WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  CRIPAK MUTATED    11   0   0
  CRIPAK WILD-TYPE 126   9  22
D29V8, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0             11              126
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  CRIPAK MUTATED    7  1   3  0
  CRIPAK WILD-TYPE 81 32  36  9
D29V9, multiclass
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  I                7               81
  II               1               32
  III              3               36
  IV               0                9
D29V10, binary
                  cls
clus                 0   1
  CRIPAK MUTATED     0  11
  CRIPAK WILD-TYPE  16 145
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      0   11
  CRIPAK WILD-TYPE   16  145
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               0               16
  YES             11              145
D29V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CRIPAK MUTATED                                             3
  CRIPAK WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CRIPAK MUTATED                                        5              1
  CRIPAK WILD-TYPE                                     41             27
                  vv
clus               LIFELONG NON-SMOKER
  CRIPAK MUTATED                     2
  CRIPAK WILD-TYPE                  22
D29V12, multiclass
                                             clus
vv                                            CRIPAK MUTATED CRIPAK WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      2               22
D29V13, continuous
                  vv
clus               R0 R1 R2 RX
  CRIPAK MUTATED    9  0  0  1
  CRIPAK WILD-TYPE 93  5  4  9
D29V14, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  R0              9               93
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(30) Variable = PABPC3 MUTATION ANALYSIS
D30V1, survival
                  sevent
clus2               0  1
  PABPC3 MUTATED    7  0
  PABPC3 WILD-TYPE 92 50
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               7              142 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               0               50 
$`PABPC3 MUTATED`
TCGA-05-4390 TCGA-05-4426 TCGA-05-4427 TCGA-44-6776 TCGA-67-3771 TCGA-67-6215 
       37.02        26.01        26.01        63.72         1.97         0.89 
TCGA-73-4666 
       20.28 

$`PABPC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PABPC3 MUTATED PABPC3 WILD-TYPE 
            0.89             0.07 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           63.72            85.32 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           26.01            13.15 
[1] "0.9 - 63.7 (26.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D30V2, continuous
D30V3, binary
                  cls
clus                0  1
  PABPC3 MUTATED    6  3
  PABPC3 WILD-TYPE 87 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      6    3
  PABPC3 WILD-TYPE   87   76
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D30V4, continuous
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PABPC3 MUTATED                            0                                 4
  PABPC3 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PABPC3 MUTATED                                                    5
  PABPC3 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PABPC3 MUTATED                                            0
  PABPC3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PABPC3 MUTATED                                0
  PABPC3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                                    0
  PABPC3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                              0                             0
  PABPC3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  PABPC3 MUTATED                                   0
  PABPC3 WILD-TYPE                                 2
D30V5, multiclass
                  vv
clus                T1  T2  T3  T4
  PABPC3 MUTATED     3   6   0   0
  PABPC3 WILD-TYPE  38 102  14   8
D30V6, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  PABPC3 MUTATED    7  1     1
  PABPC3 WILD-TYPE 88 36    34
D30V7, multiclass
       clus
vv      PABPC3 MUTATED PABPC3 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  PABPC3 MUTATED     6   2   1
  PABPC3 WILD-TYPE 131   7  21
D30V8, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  M0              6              131
  M1              2                7
  MX              1               21
                  vv
clus                I II III IV
  PABPC3 MUTATED    6  1   0  2
  PABPC3 WILD-TYPE 82 32  39  7
D30V9, multiclass
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  I                6               82
  II               1               32
  III              0               39
  IV               2                7
D30V10, binary
                  cls
clus                 0   1
  PABPC3 MUTATED     1   8
  PABPC3 WILD-TYPE  15 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      1    8
  PABPC3 WILD-TYPE   15  148
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               1               15
  YES              8              148
D30V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PABPC3 MUTATED                                             7
  PABPC3 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PABPC3 MUTATED                                        1              0
  PABPC3 WILD-TYPE                                     45             28
                  vv
clus               LIFELONG NON-SMOKER
  PABPC3 MUTATED                     1
  PABPC3 WILD-TYPE                  23
D30V12, multiclass
                                             clus
vv                                            PABPC3 MUTATED PABPC3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D30V13, continuous
                  vv
clus               R0 R1 R2 RX
  PABPC3 MUTATED    6  0  0  2
  PABPC3 WILD-TYPE 96  5  4  8
D30V14, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              2                8

Clustering(31) Variable = LRRIQ3 MUTATION ANALYSIS
D31V1, survival
                  sevent
clus2               0  1
  LRRIQ3 MUTATED    6  3
  LRRIQ3 WILD-TYPE 93 47
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               9              140 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               3               47 
$`LRRIQ3 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-44-6145 TCGA-50-5944 TCGA-50-6590 
        9.96        26.01        25.02         3.35        12.26        42.31 
TCGA-50-6593 TCGA-64-5779 TCGA-67-6215 
       11.05        16.67         0.89 

$`LRRIQ3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12         9.37         4.44        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.59         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.89             0.07 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           42.31            85.32 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           12.26            13.94 
[1] "0.9 - 42.3 (12.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
D31V3, binary
                  cls
clus                0  1
  LRRIQ3 MUTATED    6  4
  LRRIQ3 WILD-TYPE 87 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    4
  LRRIQ3 WILD-TYPE   87   75
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D31V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRRIQ3 MUTATED                            2                                 5
  LRRIQ3 WILD-TYPE                          0                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRIQ3 MUTATED                                                    3
  LRRIQ3 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRRIQ3 MUTATED                                            0
  LRRIQ3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRRIQ3 MUTATED                                               0
  LRRIQ3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  LRRIQ3 MUTATED                                0
  LRRIQ3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  LRRIQ3 MUTATED                                    0
  LRRIQ3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRRIQ3 MUTATED                              0                             0
  LRRIQ3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRRIQ3 MUTATED                                               0
  LRRIQ3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  LRRIQ3 MUTATED                                   0
  LRRIQ3 WILD-TYPE                                 2
D31V5, multiclass
                  vv
clus                T1  T2  T3  T4
  LRRIQ3 MUTATED     3   6   0   1
  LRRIQ3 WILD-TYPE  38 102  14   7
D31V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  LRRIQ3 MUTATED    5  3     2
  LRRIQ3 WILD-TYPE 90 34    33
D31V7, multiclass
       clus
vv      LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0                 5               90
  N1                 3               34
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  LRRIQ3 MUTATED     9   0   1
  LRRIQ3 WILD-TYPE 128   9  21
D31V8, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  LRRIQ3 MUTATED    5  2   3  0
  LRRIQ3 WILD-TYPE 83 31  36  9
D31V9, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                5               83
  II               2               31
  III              3               36
  IV               0                9
D31V10, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED     0  10
  LRRIQ3 WILD-TYPE  16 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      0   10
  LRRIQ3 WILD-TYPE   16  146
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  NO               0               16
  YES             10              146
D31V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRIQ3 MUTATED                                             5
  LRRIQ3 WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRIQ3 MUTATED                                        2              1
  LRRIQ3 WILD-TYPE                                     44             27
                  vv
clus               LIFELONG NON-SMOKER
  LRRIQ3 MUTATED                     1
  LRRIQ3 WILD-TYPE                  23
D31V12, multiclass
                                             clus
vv                                            LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D31V13, continuous
                  vv
clus               R0 R1 R2 RX
  LRRIQ3 MUTATED    6  0  0  0
  LRRIQ3 WILD-TYPE 96  5  4 10
D31V14, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(32) Variable = ZNF804A MUTATION ANALYSIS
D32V1, survival
                   sevent
clus2                0  1
  ZNF804A MUTATED   22  5
  ZNF804A WILD-TYPE 77 45
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               27               122 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
                5                45 
$`ZNF804A MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       19.92        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4432 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-44-3398 TCGA-44-3918 
       25.02         5.95        47.61        85.32         8.32         6.44 
TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 TCGA-49-4506 TCGA-49-6742 TCGA-50-5049 
        5.42        32.45        36.49        32.84        15.02        48.82 
TCGA-50-5942 TCGA-50-6594 TCGA-64-1676 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 
        4.44        12.16        56.81        30.44        39.52         1.97 
TCGA-73-4662 TCGA-73-4668 TCGA-91-6836 
       29.95        15.35         0.36 

$`ZNF804A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        37.02        47.05         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        2.70        63.72        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  ZNF804A MUTATED ZNF804A WILD-TYPE 
             0.36              0.07 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            85.32             83.84 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            24.03             12.46 
[1] "0.4 - 85.3 (24.0)" "0.1 - 83.8 (12.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
[1] "hr=" "2.7"
D32V2, continuous
D32V3, binary
                   cls
clus                 0  1
  ZNF804A MUTATED   17 13
  ZNF804A WILD-TYPE 76 66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED     17   13
  ZNF804A WILD-TYPE   76   66
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  FEMALE              17                76
  MALE                13                66
D32V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ZNF804A MUTATED                            0
  ZNF804A WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF804A MUTATED                                   9
  ZNF804A WILD-TYPE                                30
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF804A MUTATED                                                   17
  ZNF804A WILD-TYPE                                                 97
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF804A MUTATED                                            0
  ZNF804A WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF804A MUTATED                                               1
  ZNF804A WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ZNF804A MUTATED                                0
  ZNF804A WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF804A MUTATED                                    1
  ZNF804A WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF804A MUTATED                              0                             1
  ZNF804A WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF804A MUTATED                                               0
  ZNF804A WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  ZNF804A MUTATED                                   1
  ZNF804A WILD-TYPE                                 1
D32V5, multiclass
                   vv
clus                T1 T2 T3 T4
  ZNF804A MUTATED   10 15  4  1
  ZNF804A WILD-TYPE 31 93 10  7
D32V6, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  T1              10                31
  T2              15                93
  T3               4                10
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  ZNF804A MUTATED   17  8     4
  ZNF804A WILD-TYPE 78 29    31
D32V7, multiclass
       clus
vv      ZNF804A MUTATED ZNF804A WILD-TYPE
  N0                 17                78
  N1                  8                29
  N2+N3               4                31
                   vv
clus                 M0  M1  MX
  ZNF804A MUTATED    25   0   5
  ZNF804A WILD-TYPE 112   9  17
D32V8, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  M0              25               112
  M1               0                 9
  MX               5                17
                   vv
clus                 I II III IV
  ZNF804A MUTATED   14 10   5  0
  ZNF804A WILD-TYPE 74 23  34  9
D32V9, multiclass
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  I                14                74
  II               10                23
  III               5                34
  IV                0                 9
D32V10, binary
                   cls
clus                  0   1
  ZNF804A MUTATED     4  26
  ZNF804A WILD-TYPE  12 130
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED      4   26
  ZNF804A WILD-TYPE   12  130
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  NO                4                12
  YES              26               130
D32V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF804A MUTATED                                            14
  ZNF804A WILD-TYPE                                          48
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF804A MUTATED                                        6              9
  ZNF804A WILD-TYPE                                     40             19
                   vv
clus                LIFELONG NON-SMOKER
  ZNF804A MUTATED                     0
  ZNF804A WILD-TYPE                  24
D32V12, multiclass
                                             clus
vv                                            ZNF804A MUTATED ZNF804A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                48
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                40
  CURRENT SMOKER                                            9                19
  LIFELONG NON-SMOKER                                       0                24
D32V13, continuous
                   vv
clus                R0 R1 R2 RX
  ZNF804A MUTATED   18  2  1  1
  ZNF804A WILD-TYPE 84  3  3  9
D32V14, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  R0              18                84
  R1               2                 3
  R2               1                 3
  RX               1                 9

Clustering(33) Variable = C18ORF34 MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                 0  1
  C18ORF34 MUTATED   10  5
  C18ORF34 WILD-TYPE 89 45
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                15                134 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                 5                 45 
$`C18ORF34 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-35-5375 TCGA-38-4628 TCGA-44-2668 
        3.98        19.92         9.96         8.68        49.02         8.09 
TCGA-50-6592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-64-5775 TCGA-64-5778 
       25.51        48.62        45.17         2.86         0.10        30.44 
TCGA-73-4662 TCGA-73-4666 TCGA-91-6836 
       29.95        20.28         0.36 

$`C18ORF34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        7.36         5.95        47.61        85.32        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       38.73         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        0.69        13.87         2.01        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
              0.10               0.07 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             49.02              85.32 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             19.92              13.51 
[1] "0.1 - 49.0 (19.9)" "0.1 - 85.3 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
                    cls
clus                  0  1
  C18ORF34 MUTATED    9 10
  C18ORF34 WILD-TYPE 84 69
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      9   10
  C18ORF34 WILD-TYPE   84   69
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  FEMALE                9                 84
  MALE                 10                 69
D33V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  C18ORF34 MUTATED                            0
  C18ORF34 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  C18ORF34 MUTATED                                   5
  C18ORF34 WILD-TYPE                                34
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C18ORF34 MUTATED                                                   12
  C18ORF34 WILD-TYPE                                                102
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C18ORF34 MUTATED                                            0
  C18ORF34 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C18ORF34 MUTATED                                               1
  C18ORF34 WILD-TYPE                                             1
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  C18ORF34 MUTATED                                1
  C18ORF34 WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  C18ORF34 MUTATED                                    0
  C18ORF34 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C18ORF34 MUTATED                              0                             0
  C18ORF34 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C18ORF34 MUTATED                                               0
  C18ORF34 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  C18ORF34 MUTATED                                   0
  C18ORF34 WILD-TYPE                                 2
D33V5, multiclass
                    vv
clus                 T1 T2 T3 T4
  C18ORF34 MUTATED    5 11  1  2
  C18ORF34 WILD-TYPE 36 97 13  6
D33V6, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  T1                5                 36
  T2               11                 97
  T3                1                 13
  T4                2                  6
                    vv
clus                 N0 N1 N2+N3
  C18ORF34 MUTATED   12  6     1
  C18ORF34 WILD-TYPE 83 31    34
D33V7, multiclass
       clus
vv      C18ORF34 MUTATED C18ORF34 WILD-TYPE
  N0                  12                 83
  N1                   6                 31
  N2+N3                1                 34
                    vv
clus                  M0  M1  MX
  C18ORF34 MUTATED    16   2   1
  C18ORF34 WILD-TYPE 121   7  21
D33V8, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  M0               16                121
  M1                2                  7
  MX                1                 21
                    vv
clus                  I II III IV
  C18ORF34 MUTATED   10  3   4  2
  C18ORF34 WILD-TYPE 78 30  35  7
D33V9, multiclass
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                4                 35
  IV                 2                  7
D33V10, binary
                    cls
clus                   0   1
  C18ORF34 MUTATED     2  17
  C18ORF34 WILD-TYPE  14 139
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      2   17
  C18ORF34 WILD-TYPE   14  139
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  NO                 2                 14
  YES               17                139
D33V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C18ORF34 MUTATED                                             9
  C18ORF34 WILD-TYPE                                          53
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C18ORF34 MUTATED                                        4              5
  C18ORF34 WILD-TYPE                                     42             23
                    vv
clus                 LIFELONG NON-SMOKER
  C18ORF34 MUTATED                     1
  C18ORF34 WILD-TYPE                  23
D33V12, multiclass
                                             clus
vv                                            C18ORF34 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            C18ORF34 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              23
  LIFELONG NON-SMOKER                                         23
D33V13, continuous
                    vv
clus                 R0 R1 R2 RX
  C18ORF34 MUTATED   13  1  1  1
  C18ORF34 WILD-TYPE 89  4  3  9
D33V14, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  R0               13                 89
  R1                1                  4
  R2                1                  3
  RX                1                  9

Clustering(34) Variable = SERPINB4 MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                 0  1
  SERPINB4 MUTATED    7  3
  SERPINB4 WILD-TYPE 92 47
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                139 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 3                 47 
$`SERPINB4 MUTATED`
TCGA-05-4417 TCGA-05-4424 TCGA-38-4626 TCGA-44-2668 TCGA-44-6776 TCGA-49-4486 
       14.93        30.02        85.32         8.09        63.72        76.21 
TCGA-49-4487 TCGA-50-5049 TCGA-73-4668 TCGA-73-4677 
       28.11        48.82        15.35         1.25 

$`SERPINB4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       16.41        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
              1.25               0.07 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             85.32              83.84 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
            29.065             12.990 
[1] "1.2 - 85.3 (29.1)" "0.1 - 83.8 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
[1] "hr=" "2.8"
D34V2, continuous
D34V3, binary
                    cls
clus                  0  1
  SERPINB4 MUTATED    5  5
  SERPINB4 WILD-TYPE 88 74
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      5    5
  SERPINB4 WILD-TYPE   88   74
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  FEMALE                5                 88
  MALE                  5                 74
D34V4, continuous
[1] "Remove cluster labels:" "SERPINB4 MUTATED"      
clus
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  SERPINB4 MUTATED                            0
  SERPINB4 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  SERPINB4 MUTATED                                   2
  SERPINB4 WILD-TYPE                                37
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SERPINB4 MUTATED                                                    7
  SERPINB4 WILD-TYPE                                                107
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SERPINB4 MUTATED                                            0
  SERPINB4 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SERPINB4 MUTATED                                               0
  SERPINB4 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  SERPINB4 MUTATED                                0
  SERPINB4 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  SERPINB4 MUTATED                                    1
  SERPINB4 WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SERPINB4 MUTATED                              0                             0
  SERPINB4 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SERPINB4 MUTATED                                               0
  SERPINB4 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  SERPINB4 MUTATED                                   0
  SERPINB4 WILD-TYPE                                 2
D34V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  SERPINB4 MUTATED     3   6   1   0
  SERPINB4 WILD-TYPE  38 102  13   8
D34V6, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  T1                3                 38
  T2                6                102
  T3                1                 13
  T4                0                  8
                    vv
clus                 N0 N1 N2+N3
  SERPINB4 MUTATED    9  1     0
  SERPINB4 WILD-TYPE 86 36    35
D34V7, multiclass
       clus
vv      SERPINB4 MUTATED SERPINB4 WILD-TYPE
  N0                   9                 86
  N1                   1                 36
  N2+N3                0                 35
                    vv
clus                  M0  M1  MX
  SERPINB4 MUTATED     9   0   1
  SERPINB4 WILD-TYPE 128   9  21
D34V8, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  M0                9                128
  M1                0                  9
  MX                1                 21
                    vv
clus                  I II III IV
  SERPINB4 MUTATED    7  3   0  0
  SERPINB4 WILD-TYPE 81 30  39  9
D34V9, multiclass
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  I                  7                 81
  II                 3                 30
  III                0                 39
  IV                 0                  9
D34V10, binary
                    cls
clus                   0   1
  SERPINB4 MUTATED     1   9
  SERPINB4 WILD-TYPE  15 147
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      1    9
  SERPINB4 WILD-TYPE   15  147
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  NO                 1                 15
  YES                9                147
D34V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SERPINB4 MUTATED                                             6
  SERPINB4 WILD-TYPE                                          56
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SERPINB4 MUTATED                                        2              1
  SERPINB4 WILD-TYPE                                     44             27
                    vv
clus                 LIFELONG NON-SMOKER
  SERPINB4 MUTATED                     0
  SERPINB4 WILD-TYPE                  24
D34V12, multiclass
                                             clus
vv                                            SERPINB4 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            SERPINB4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              27
  LIFELONG NON-SMOKER                                         24
D34V13, continuous
                    vv
clus                 R0 R1 R2 RX
  SERPINB4 MUTATED    7  1  0  0
  SERPINB4 WILD-TYPE 95  4  4 10
D34V14, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  R0                7                 95
  R1                1                  4
  R2                0                  4
  RX                0                 10

Clustering(35) Variable = OR2T34 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  OR2T34 MUTATED    6  3
  OR2T34 WILD-TYPE 93 47
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               9              140 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               3               47 
$`OR2T34 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-2657 TCGA-44-2668 TCGA-50-5935 
       30.02        26.01        19.10        13.15         8.09        21.47 
TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
       42.31        12.16         1.97 

$`OR2T34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2T34 MUTATED OR2T34 WILD-TYPE 
            1.97             0.07 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           42.31            85.32 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           19.10            13.51 
[1] "2.0 - 42.3 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, binary
                  cls
clus                0  1
  OR2T34 MUTATED    6  4
  OR2T34 WILD-TYPE 87 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      6    4
  OR2T34 WILD-TYPE   87   75
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D35V4, continuous
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4676 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T34 MUTATED                            0                                 2
  OR2T34 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T34 MUTATED                                                    8
  OR2T34 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T34 MUTATED                                            0
  OR2T34 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T34 MUTATED                                               0
  OR2T34 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR2T34 MUTATED                                0
  OR2T34 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T34 MUTATED                                    0
  OR2T34 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T34 MUTATED                              0                             0
  OR2T34 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T34 MUTATED                                               0
  OR2T34 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2T34 MUTATED                                   0
  OR2T34 WILD-TYPE                                 2
D35V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR2T34 MUTATED     2   6   2   0
  OR2T34 WILD-TYPE  39 102  12   8
D35V6, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  T1              2               39
  T2              6              102
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR2T34 MUTATED    7  1     1
  OR2T34 WILD-TYPE 88 36    34
D35V7, multiclass
       clus
vv      OR2T34 MUTATED OR2T34 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR2T34 MUTATED    10   0   0
  OR2T34 WILD-TYPE 127   9  22
D35V8, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR2T34 MUTATED    7  2   1  0
  OR2T34 WILD-TYPE 81 31  38  9
D35V9, multiclass
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  I                7               81
  II               2               31
  III              1               38
  IV               0                9
D35V10, binary
                  cls
clus                 0   1
  OR2T34 MUTATED     1   9
  OR2T34 WILD-TYPE  15 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      1    9
  OR2T34 WILD-TYPE   15  147
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  NO               1               15
  YES              9              147
D35V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T34 MUTATED                                             8
  OR2T34 WILD-TYPE                                          54
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T34 MUTATED                                        1              0
  OR2T34 WILD-TYPE                                     45             28
                  vv
clus               LIFELONG NON-SMOKER
  OR2T34 MUTATED                     0
  OR2T34 WILD-TYPE                  24
D35V12, multiclass
                                             clus
vv                                            OR2T34 MUTATED OR2T34 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D35V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR2T34 MUTATED    5  1  0  0
  OR2T34 WILD-TYPE 97  4  4 10
D35V14, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  R0              5               97
  R1              1                4
  R2              0                4
  RX              0               10

Clustering(36) Variable = ZNF492 MUTATION ANALYSIS
D36V1, survival
                  sevent
clus2               0  1
  ZNF492 MUTATED    4  2
  ZNF492 WILD-TYPE 95 48
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               6              143 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               2               48 
$`ZNF492 MUTATED`
TCGA-05-4430 TCGA-38-4625 TCGA-44-6777 TCGA-50-5049 TCGA-50-6593 TCGA-73-4670 
       25.02        47.61        32.45        48.82        11.05         0.46 

$`ZNF492 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZNF492 MUTATED ZNF492 WILD-TYPE 
            0.46             0.07 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
           48.82            85.32 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
          28.735           13.150 
[1] "0.5 - 48.8 (28.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
[1] "hr=" "1.5"
D36V2, continuous
D36V3, binary
                  cls
clus                0  1
  ZNF492 MUTATED    5  3
  ZNF492 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      5    3
  ZNF492 WILD-TYPE   88   76
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D36V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF492 MUTATED                            0                                 3
  ZNF492 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF492 MUTATED                                                    5
  ZNF492 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF492 MUTATED                                            0
  ZNF492 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF492 MUTATED                                               0
  ZNF492 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF492 MUTATED                                0
  ZNF492 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF492 MUTATED                                    0
  ZNF492 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF492 MUTATED                              0                             0
  ZNF492 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF492 MUTATED                                               0
  ZNF492 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  ZNF492 MUTATED                                   0
  ZNF492 WILD-TYPE                                 2
D36V5, multiclass
                  vv
clus                T1  T2  T3  T4
  ZNF492 MUTATED     1   7   0   0
  ZNF492 WILD-TYPE  40 101  14   8
D36V6, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ZNF492 MUTATED    6  0     1
  ZNF492 WILD-TYPE 89 37    34
D36V7, multiclass
       clus
vv      ZNF492 MUTATED ZNF492 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZNF492 MUTATED     6   1   1
  ZNF492 WILD-TYPE 131   8  21
D36V8, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  M0              6              131
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  ZNF492 MUTATED    6  0   1  1
  ZNF492 WILD-TYPE 82 33  38  8
D36V9, multiclass
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  I                6               82
  II               0               33
  III              1               38
  IV               1                8
D36V10, binary
                  cls
clus                 0   1
  ZNF492 MUTATED     2   6
  ZNF492 WILD-TYPE  14 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      2    6
  ZNF492 WILD-TYPE   14  150
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  NO               2               14
  YES              6              150
D36V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF492 MUTATED                                             5
  ZNF492 WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF492 MUTATED                                        1              1
  ZNF492 WILD-TYPE                                     45             27
                  vv
clus               LIFELONG NON-SMOKER
  ZNF492 MUTATED                     0
  ZNF492 WILD-TYPE                  24
D36V12, multiclass
                                             clus
vv                                            ZNF492 MUTATED ZNF492 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D36V13, continuous
                  vv
clus               R0 R1 R2 RX
  ZNF492 MUTATED    4  0  0  1
  ZNF492 WILD-TYPE 98  5  4  9
D36V14, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  R0              4               98
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(37) Variable = OR4C15 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  OR4C15 MUTATED   10  2
  OR4C15 WILD-TYPE 89 48
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              12              137 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               48 
$`OR4C15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4430 TCGA-35-5375 TCGA-44-3398 
        9.96        47.05        29.95        25.02         8.68         8.32 
TCGA-49-6743 TCGA-50-5066 TCGA-50-5941 TCGA-55-6712 TCGA-73-4668 TCGA-91-6829 
       12.13         9.76         9.37         0.79        15.35        41.33 

$`OR4C15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86         0.07        32.61        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  OR4C15 MUTATED OR4C15 WILD-TYPE 
            0.79             0.07 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
           47.05            85.32 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
          11.045           14.010 
[1] "0.8 - 47.0 (11.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
                  cls
clus                0  1
  OR4C15 MUTATED    6  7
  OR4C15 WILD-TYPE 87 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      6    7
  OR4C15 WILD-TYPE   87   72
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  FEMALE              6               87
  MALE                7               72
D37V4, continuous
[1] "Remove cluster labels:" "OR4C15 MUTATED"        
clus
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4C15 MUTATED                            0                                 6
  OR4C15 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C15 MUTATED                                                    4
  OR4C15 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4C15 MUTATED                                            0
  OR4C15 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4C15 MUTATED                                               1
  OR4C15 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4C15 MUTATED                                1
  OR4C15 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4C15 MUTATED                                    1
  OR4C15 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4C15 MUTATED                              0                             0
  OR4C15 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4C15 MUTATED                                               0
  OR4C15 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4C15 MUTATED                                   0
  OR4C15 WILD-TYPE                                 2
D37V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4C15 MUTATED     3   8   0   2
  OR4C15 WILD-TYPE  38 100  14   6
D37V6, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  T1              3               38
  T2              8              100
  T3              0               14
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  OR4C15 MUTATED    5  4     4
  OR4C15 WILD-TYPE 90 33    31
D37V7, multiclass
       clus
vv      OR4C15 MUTATED OR4C15 WILD-TYPE
  N0                 5               90
  N1                 4               33
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  OR4C15 MUTATED    10   0   3
  OR4C15 WILD-TYPE 127   9  19
D37V8, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              3               19
                  vv
clus                I II III IV
  OR4C15 MUTATED    5  2   5  0
  OR4C15 WILD-TYPE 83 31  34  9
D37V9, multiclass
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  I                5               83
  II               2               31
  III              5               34
  IV               0                9
D37V10, binary
                  cls
clus                 0   1
  OR4C15 MUTATED     0  13
  OR4C15 WILD-TYPE  16 143
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      0   13
  OR4C15 WILD-TYPE   16  143
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  NO               0               16
  YES             13              143
D37V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4C15 MUTATED                                             7
  OR4C15 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4C15 MUTATED                                        2              3
  OR4C15 WILD-TYPE                                     44             25
                  vv
clus               LIFELONG NON-SMOKER
  OR4C15 MUTATED                     1
  OR4C15 WILD-TYPE                  23
D37V12, multiclass
                                             clus
vv                                            OR4C15 MUTATED OR4C15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1               23
D37V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR4C15 MUTATED    9  0  0  0
  OR4C15 WILD-TYPE 93  5  4 10
D37V14, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  R0              9               93
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(38) Variable = TBX22 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  TBX22 MUTATED    7  4
  TBX22 WILD-TYPE 92 46
  TBX22 MUTATED TBX22 WILD-TYPE 
             11             138 
  TBX22 MUTATED TBX22 WILD-TYPE 
              4              46 
$`TBX22 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4628 TCGA-44-2656 TCGA-49-4514 TCGA-49-6743 
       19.92         9.96        49.02        19.10        43.20        12.13 
TCGA-50-5066 TCGA-50-6593 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
        9.76        11.05         0.10        30.44        39.52 

$`TBX22 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  TBX22 MUTATED TBX22 WILD-TYPE 
           0.10            0.07 
  TBX22 MUTATED TBX22 WILD-TYPE 
          49.02           85.32 
  TBX22 MUTATED TBX22 WILD-TYPE 
          19.10           13.51 
[1] "0.1 - 49.0 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
                 cls
clus               0  1
  TBX22 MUTATED    5  7
  TBX22 WILD-TYPE 88 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      5    7
  TBX22 WILD-TYPE   88   72
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  FEMALE             5              88
  MALE               7              72
D38V4, continuous
[1] "Remove cluster labels:" "TBX22 MUTATED"         
clus
  TBX22 MUTATED TBX22 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX22 MUTATED                            0                                 6
  TBX22 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX22 MUTATED                                                    3
  TBX22 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX22 MUTATED                                            0
  TBX22 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX22 MUTATED                                               1
  TBX22 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX22 MUTATED                                1
  TBX22 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX22 MUTATED                                    0
  TBX22 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX22 MUTATED                              0                             1
  TBX22 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX22 MUTATED                                               0
  TBX22 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  TBX22 MUTATED                                   0
  TBX22 WILD-TYPE                                 2
D38V5, multiclass
                 vv
clus               T1  T2  T3  T4
  TBX22 MUTATED     4   6   0   2
  TBX22 WILD-TYPE  37 102  14   6
D38V6, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  TBX22 MUTATED    8  2     2
  TBX22 WILD-TYPE 87 35    33
D38V7, multiclass
       clus
vv      TBX22 MUTATED TBX22 WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  TBX22 MUTATED    11   0   1
  TBX22 WILD-TYPE 126   9  21
D38V8, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  TBX22 MUTATED    7  1   4  0
  TBX22 WILD-TYPE 81 32  35  9
D38V9, multiclass
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D38V10, binary
                 cls
clus                0   1
  TBX22 MUTATED     0  12
  TBX22 WILD-TYPE  16 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      0   12
  TBX22 WILD-TYPE   16  144
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  NO              0              16
  YES            12             144
D38V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TBX22 MUTATED                                             6
  TBX22 WILD-TYPE                                          56
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TBX22 MUTATED                                        3              1
  TBX22 WILD-TYPE                                     43             27
                 vv
clus              LIFELONG NON-SMOKER
  TBX22 MUTATED                     2
  TBX22 WILD-TYPE                  22
D38V12, multiclass
                                             clus
vv                                            TBX22 MUTATED TBX22 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     2              22
D38V13, continuous
                 vv
clus              R0 R1 R2 RX
  TBX22 MUTATED    8  0  0  1
  TBX22 WILD-TYPE 94  5  4  9
D38V14, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(39) Variable = U2AF1 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 94 49
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             143 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              1              49 
$`U2AF1 MUTATED`
TCGA-49-4505 TCGA-49-6743 TCGA-49-6744 TCGA-50-5941 TCGA-55-1595 TCGA-64-1680 
       14.07        12.13        12.99         9.37        48.62        37.02 

$`U2AF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  U2AF1 MUTATED U2AF1 WILD-TYPE 
           9.37            0.07 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          48.62           85.32 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          13.53           13.87 
[1] "9.4 - 48.6 (13.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
[1] "hr=" "2.3"
D39V2, continuous
D39V3, binary
                 cls
clus               0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 88 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      5    1
  U2AF1 WILD-TYPE   88   78
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  FEMALE             5              88
  MALE               1              78
D39V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  U2AF1 MUTATED                            0                                 2
  U2AF1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  U2AF1 MUTATED                                                    2
  U2AF1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  U2AF1 MUTATED                                            0
  U2AF1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  U2AF1 MUTATED                                2
  U2AF1 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                                    0
  U2AF1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                              0                             0
  U2AF1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  U2AF1 MUTATED                                   0
  U2AF1 WILD-TYPE                                 2
D39V5, multiclass
                 vv
clus               T1  T2  T3  T4
  U2AF1 MUTATED     2   4   0   0
  U2AF1 WILD-TYPE  39 104  14   8
D39V6, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  U2AF1 MUTATED    1  2     3
  U2AF1 WILD-TYPE 94 35    32
D39V7, multiclass
       clus
vv      U2AF1 MUTATED U2AF1 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  U2AF1 MUTATED     3   1   2
  U2AF1 WILD-TYPE 134   8  20
D39V8, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  M0             3             134
  M1             1               8
  MX             2              20
                 vv
clus               I II III IV
  U2AF1 MUTATED    1  2   2  1
  U2AF1 WILD-TYPE 87 31  37  8
D39V9, multiclass
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  I               1              87
  II              2              31
  III             2              37
  IV              1               8
D39V10, binary
                 cls
clus                0   1
  U2AF1 MUTATED     1   5
  U2AF1 WILD-TYPE  15 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      1    5
  U2AF1 WILD-TYPE   15  151
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  NO              1              15
  YES             5             151
D39V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  U2AF1 MUTATED                                             4
  U2AF1 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  U2AF1 MUTATED                                        1              1
  U2AF1 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  U2AF1 MUTATED                     0
  U2AF1 WILD-TYPE                  24
D39V12, multiclass
                                             clus
vv                                            U2AF1 MUTATED U2AF1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D39V13, continuous
                 vv
clus               R0  R1  R2  RX
  U2AF1 MUTATED     2   0   0   1
  U2AF1 WILD-TYPE 100   5   4   9
D39V14, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  R0             2             100
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(40) Variable = FERD3L MUTATION ANALYSIS
D40V1, survival
                  sevent
clus2               0  1
  FERD3L MUTATED    5  2
  FERD3L WILD-TYPE 94 48
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              142 
  FERD3L MUTATED FERD3L WILD-TYPE 
               2               48 
$`FERD3L MUTATED`
TCGA-05-4424 TCGA-38-4626 TCGA-44-5645 TCGA-50-5045 TCGA-50-5933 TCGA-64-1676 
       30.02        85.32         6.84        71.47        77.88        56.81 
TCGA-64-5781 
       39.52 

$`FERD3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         3.48         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FERD3L MUTATED FERD3L WILD-TYPE 
            6.84             0.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
           85.32            83.84 
  FERD3L MUTATED FERD3L WILD-TYPE 
           56.81            13.07 
[1] "6.8 - 85.3 (56.8)" "0.1 - 83.8 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
[1] "hr=" "5.6"
D40V2, continuous
D40V3, binary
                  cls
clus                0  1
  FERD3L MUTATED    4  3
  FERD3L WILD-TYPE 89 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    3
  FERD3L WILD-TYPE   89   76
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D40V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FERD3L MUTATED                            0                                 2
  FERD3L WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FERD3L MUTATED                                                    5
  FERD3L WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FERD3L MUTATED                                            0
  FERD3L WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FERD3L MUTATED                                0
  FERD3L WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                                    0
  FERD3L WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                              0                             0
  FERD3L WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  FERD3L MUTATED                                   0
  FERD3L WILD-TYPE                                 2
D40V5, multiclass
                  vv
clus                T1  T2  T3  T4
  FERD3L MUTATED     1   3   1   1
  FERD3L WILD-TYPE  40 105  13   7
D40V6, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  T1              1               40
  T2              3              105
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  FERD3L MUTATED    4  1     1
  FERD3L WILD-TYPE 91 36    34
D40V7, multiclass
       clus
vv      FERD3L MUTATED FERD3L WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  FERD3L MUTATED     6   0   0
  FERD3L WILD-TYPE 131   9  22
D40V8, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  FERD3L MUTATED    4  2   1  0
  FERD3L WILD-TYPE 84 31  38  9
D40V9, multiclass
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  I                4               84
  II               2               31
  III              1               38
  IV               0                9
D40V10, binary
                  cls
clus                 0   1
  FERD3L MUTATED     2   5
  FERD3L WILD-TYPE  14 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      2    5
  FERD3L WILD-TYPE   14  151
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               2               14
  YES              5              151
D40V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FERD3L MUTATED                                             2
  FERD3L WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FERD3L MUTATED                                        1              2
  FERD3L WILD-TYPE                                     45             26
                  vv
clus               LIFELONG NON-SMOKER
  FERD3L MUTATED                     0
  FERD3L WILD-TYPE                  24
D40V12, multiclass
                                             clus
vv                                            FERD3L MUTATED FERD3L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D40V13, continuous
                  vv
clus               R0 R1 R2 RX
  FERD3L MUTATED    3  1  0  0
  FERD3L WILD-TYPE 99  4  4 10
D40V14, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  R0              3               99
  R1              1                4
  R2              0                4
  RX              0               10

Clustering(41) Variable = LRRTM4 MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  LRRTM4 MUTATED   11  5
  LRRTM4 WILD-TYPE 88 45
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              16              133 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
               5               45 
$`LRRTM4 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4432 TCGA-05-4434 TCGA-38-4631 TCGA-44-2659 
       38.07        19.92        25.02        15.02        11.64        17.39 
TCGA-44-6144 TCGA-44-6778 TCGA-49-4494 TCGA-49-6743 TCGA-55-1592 TCGA-64-1676 
        0.30        36.49        35.54        12.13        23.05        56.81 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-73-4677 
       83.84        16.67        39.52         1.25 

$`LRRTM4 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-5420 
       30.02        26.01        26.01        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
            0.30             0.07 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
           83.84            85.32 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
          21.485           12.660 
[1] "0.3 - 83.8 (21.5)" "0.1 - 85.3 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
D41V3, binary
                  cls
clus                0  1
  LRRTM4 MUTATED    5 13
  LRRTM4 WILD-TYPE 88 66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      5   13
  LRRTM4 WILD-TYPE   88   66
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  FEMALE              5               88
  MALE               13               66
D41V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRRTM4 MUTATED                            1                                 5
  LRRTM4 WILD-TYPE                          1                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRTM4 MUTATED                                                   10
  LRRTM4 WILD-TYPE                                                104
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRRTM4 MUTATED                                            0
  LRRTM4 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRRTM4 MUTATED                                               0
  LRRTM4 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  LRRTM4 MUTATED                                1
  LRRTM4 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  LRRTM4 MUTATED                                    0
  LRRTM4 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRRTM4 MUTATED                              0                             0
  LRRTM4 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRRTM4 MUTATED                                               1
  LRRTM4 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  LRRTM4 MUTATED                                   0
  LRRTM4 WILD-TYPE                                 2
D41V5, multiclass
                  vv
clus               T1 T2 T3 T4
  LRRTM4 MUTATED    5 11  1  1
  LRRTM4 WILD-TYPE 36 97 13  7
D41V6, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  T1              5               36
  T2             11               97
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  LRRTM4 MUTATED   12  3     3
  LRRTM4 WILD-TYPE 83 34    32
D41V7, multiclass
       clus
vv      LRRTM4 MUTATED LRRTM4 WILD-TYPE
  N0                12               83
  N1                 3               34
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  LRRTM4 MUTATED    15   1   2
  LRRTM4 WILD-TYPE 122   8  20
D41V8, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  M0             15              122
  M1              1                8
  MX              2               20
                  vv
clus                I II III IV
  LRRTM4 MUTATED   12  2   3  1
  LRRTM4 WILD-TYPE 76 31  36  8
D41V9, multiclass
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  I               12               76
  II               2               31
  III              3               36
  IV               1                8
D41V10, binary
                  cls
clus                 0   1
  LRRTM4 MUTATED     0  18
  LRRTM4 WILD-TYPE  16 138
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      0   18
  LRRTM4 WILD-TYPE   16  138
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  NO               0               16
  YES             18              138
D41V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRTM4 MUTATED                                            11
  LRRTM4 WILD-TYPE                                          51
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRTM4 MUTATED                                        3              4
  LRRTM4 WILD-TYPE                                     43             24
                  vv
clus               LIFELONG NON-SMOKER
  LRRTM4 MUTATED                     0
  LRRTM4 WILD-TYPE                  24
D41V12, multiclass
                                             clus
vv                                            LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0               24
D41V13, continuous
                  vv
clus               R0 R1 R2 RX
  LRRTM4 MUTATED   13  0  1  2
  LRRTM4 WILD-TYPE 89  5  3  8
D41V14, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  R0             13               89
  R1              0                5
  R2              1                3
  RX              2                8

Clustering(42) Variable = OR5W2 MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  OR5W2 MUTATED    5  4
  OR5W2 WILD-TYPE 94 46
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             140 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              4              46 
$`OR5W2 MUTATED`
TCGA-05-4382 TCGA-05-4415 TCGA-44-2665 TCGA-49-4507 TCGA-50-6592 TCGA-55-1595 
       19.92         2.96        13.15         8.81        25.51        48.62 
TCGA-64-1678 TCGA-73-4659 TCGA-91-6836 
       39.09        23.38         0.36 

$`OR5W2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  OR5W2 MUTATED OR5W2 WILD-TYPE 
           0.36            0.07 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          48.62           85.32 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 48.6 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
[1] "hr=" "1.4"
D42V2, continuous
D42V3, binary
                 cls
clus               0  1
  OR5W2 MUTATED    6  3
  OR5W2 WILD-TYPE 87 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      6    3
  OR5W2 WILD-TYPE   87   76
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D42V4, continuous
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5W2 MUTATED                            0                                 2
  OR5W2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5W2 MUTATED                                                    6
  OR5W2 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5W2 MUTATED                                            0
  OR5W2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5W2 MUTATED                                               0
  OR5W2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5W2 MUTATED                                1
  OR5W2 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5W2 MUTATED                                    0
  OR5W2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5W2 MUTATED                              0                             0
  OR5W2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5W2 MUTATED                                               0
  OR5W2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5W2 MUTATED                                   0
  OR5W2 WILD-TYPE                                 2
D42V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5W2 MUTATED     1   6   1   1
  OR5W2 WILD-TYPE  40 102  13   7
D42V6, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR5W2 MUTATED    5  2     2
  OR5W2 WILD-TYPE 90 35    33
D42V7, multiclass
       clus
vv      OR5W2 MUTATED OR5W2 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  OR5W2 MUTATED     8   0   1
  OR5W2 WILD-TYPE 129   9  21
D42V8, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR5W2 MUTATED    4  2   3  0
  OR5W2 WILD-TYPE 84 31  36  9
D42V9, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  I               4              84
  II              2              31
  III             3              36
  IV              0               9
D42V10, binary
                 cls
clus                0   1
  OR5W2 MUTATED     1   8
  OR5W2 WILD-TYPE  15 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      1    8
  OR5W2 WILD-TYPE   15  148
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  NO              1              15
  YES             8             148
D42V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5W2 MUTATED                                             5
  OR5W2 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5W2 MUTATED                                        2              1
  OR5W2 WILD-TYPE                                     44             27
                 vv
clus              LIFELONG NON-SMOKER
  OR5W2 MUTATED                     1
  OR5W2 WILD-TYPE                  23
D42V12, multiclass
                                             clus
vv                                            OR5W2 MUTATED OR5W2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D42V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR5W2 MUTATED    6  0  0  0
  OR5W2 WILD-TYPE 96  5  4 10
D42V14, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  R0             6              96
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(43) Variable = RIT1 MUTATION ANALYSIS
D43V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    6  2
  RIT1 WILD-TYPE 93 48
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            141 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             48 
$`RIT1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-44-6779 TCGA-49-4514 TCGA-55-1596 TCGA-73-4666 
       14.01         9.96        16.41        43.20        45.17        20.28 
TCGA-73-4675 TCGA-91-6836 
        1.32         0.36 

$`RIT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         0.46         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  RIT1 MUTATED RIT1 WILD-TYPE 
          0.36           0.07 
  RIT1 MUTATED RIT1 WILD-TYPE 
         45.17          85.32 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.21          13.15 
[1] "0.4 - 45.2 (15.2)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, binary
                cls
clus              0  1
  RIT1 MUTATED    4  4
  RIT1 WILD-TYPE 89 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      4    4
  RIT1 WILD-TYPE   89   75
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D43V4, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIT1 MUTATED                            0                                 2
  RIT1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIT1 MUTATED                                                    5
  RIT1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIT1 MUTATED                                            0
  RIT1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  RIT1 MUTATED                                0
  RIT1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                                    0
  RIT1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                              0                             1
  RIT1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  RIT1 MUTATED                                   0
  RIT1 WILD-TYPE                                 2
D43V5, multiclass
                vv
clus              T1  T2  T3  T4
  RIT1 MUTATED     2   4   1   1
  RIT1 WILD-TYPE  39 104  13   7
D43V6, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  RIT1 MUTATED    3  4     1
  RIT1 WILD-TYPE 92 33    34
D43V7, multiclass
       clus
vv      RIT1 MUTATED RIT1 WILD-TYPE
  N0               3             92
  N1               4             33
  N2+N3            1             34
                vv
clus              M0  M1  MX
  RIT1 MUTATED     5   1   2
  RIT1 WILD-TYPE 132   8  20
D43V8, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            5            132
  M1            1              8
  MX            2             20
                vv
clus              I II III IV
  RIT1 MUTATED    2  2   3  1
  RIT1 WILD-TYPE 86 31  36  8
D43V9, multiclass
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  I              2             86
  II             2             31
  III            3             36
  IV             1              8
D43V10, binary
                cls
clus               0   1
  RIT1 MUTATED     1   7
  RIT1 WILD-TYPE  15 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   15  149
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             15
  YES            7            149
D43V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RIT1 MUTATED                                             3
  RIT1 WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RIT1 MUTATED                                        3              2
  RIT1 WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  RIT1 MUTATED                     0
  RIT1 WILD-TYPE                  24
D43V12, multiclass
                                             clus
vv                                            RIT1 MUTATED RIT1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D43V13, continuous
                vv
clus             R0 R1 R2 RX
  RIT1 MUTATED    3  0  0  3
  RIT1 WILD-TYPE 99  5  4  7
D43V14, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  R0            3             99
  R1            0              5
  R2            0              4
  RX            3              7

Clustering(44) Variable = OR5D14 MUTATION ANALYSIS
D44V1, survival
                  sevent
clus2               0  1
  OR5D14 MUTATED    7  4
  OR5D14 WILD-TYPE 92 46
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              11              138 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               4               46 
$`OR5D14 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-38-4627 TCGA-38-4631 TCGA-50-5045 
       19.92        29.95        25.02        37.71        11.64        71.47 
TCGA-50-5049 TCGA-50-5941 TCGA-50-6590 TCGA-64-5778 TCGA-73-4668 
       48.82         9.37        42.31        30.44        15.35 

$`OR5D14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4628 
        7.36         5.95         8.68        47.61        85.32        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR5D14 MUTATED OR5D14 WILD-TYPE 
            9.37             0.07 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
           71.47            85.32 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
          29.950           12.825 
[1] "9.4 - 71.5 (29.9)" "0.1 - 85.3 (12.8)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
                  cls
clus                0  1
  OR5D14 MUTATED    7  6
  OR5D14 WILD-TYPE 86 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      7    6
  OR5D14 WILD-TYPE   86   73
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  FEMALE              7               86
  MALE                6               73
D44V4, continuous
[1] "Remove cluster labels:" "OR5D14 MUTATED"        
clus
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5D14 MUTATED                            0                                 3
  OR5D14 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5D14 MUTATED                                                    6
  OR5D14 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5D14 MUTATED                                            0
  OR5D14 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5D14 MUTATED                                               1
  OR5D14 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR5D14 MUTATED                                0
  OR5D14 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5D14 MUTATED                                    1
  OR5D14 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5D14 MUTATED                              0                             1
  OR5D14 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5D14 MUTATED                                               1
  OR5D14 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5D14 MUTATED                                   0
  OR5D14 WILD-TYPE                                 2
D44V5, multiclass
                  vv
clus               T1 T2 T3 T4
  OR5D14 MUTATED    1 11  1  0
  OR5D14 WILD-TYPE 40 97 13  8
D44V6, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  T1              1               40
  T2             11               97
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR5D14 MUTATED    7  4     2
  OR5D14 WILD-TYPE 88 33    33
D44V7, multiclass
       clus
vv      OR5D14 MUTATED OR5D14 WILD-TYPE
  N0                 7               88
  N1                 4               33
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  OR5D14 MUTATED    13   0   0
  OR5D14 WILD-TYPE 124   9  22
D44V8, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  M0             13              124
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR5D14 MUTATED    8  3   2  0
  OR5D14 WILD-TYPE 80 30  37  9
D44V9, multiclass
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D44V10, binary
                  cls
clus                 0   1
  OR5D14 MUTATED     2  11
  OR5D14 WILD-TYPE  14 145
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      2   11
  OR5D14 WILD-TYPE   14  145
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  NO               2               14
  YES             11              145
D44V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5D14 MUTATED                                             8
  OR5D14 WILD-TYPE                                          54
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5D14 MUTATED                                        0              3
  OR5D14 WILD-TYPE                                     46             25
                  vv
clus               LIFELONG NON-SMOKER
  OR5D14 MUTATED                     0
  OR5D14 WILD-TYPE                  24
D44V12, multiclass
                                             clus
vv                                            OR5D14 MUTATED OR5D14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D44V13, continuous
[1] "Remove cluster labels:" "OR5D14 MUTATED"        
clus
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6642       TCGA-55-6712       TCGA-64-1677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  OR5D14 MUTATED    8  0  1  0
  OR5D14 WILD-TYPE 94  5  3 10
D44V14, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  R0              8               94
  R1              0                5
  R2              1                3
  RX              0               10

Clustering(45) Variable = OR8H2 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  OR8H2 MUTATED    6  3
  OR8H2 WILD-TYPE 93 47
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              9             140 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              3              47 
$`OR8H2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-38-4629 TCGA-44-6145 TCGA-49-4507 
        9.96        26.01         7.36        28.37         3.35         8.81 
TCGA-50-5072 TCGA-64-5778 TCGA-64-5781 
        8.05        30.44        39.52 

$`OR8H2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR8H2 MUTATED OR8H2 WILD-TYPE 
           3.35            0.07 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
          39.52           85.32 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
           9.96           13.94 
[1] "3.4 - 39.5 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
                 cls
clus               0  1
  OR8H2 MUTATED    4  7
  OR8H2 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      4    7
  OR8H2 WILD-TYPE   89   72
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D45V4, continuous
[1] "Remove cluster labels:" "OR8H2 MUTATED"         
clus
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              2              10 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-71-6725 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR8H2 MUTATED                            0                                 5
  OR8H2 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8H2 MUTATED                                                    5
  OR8H2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR8H2 MUTATED                                            0
  OR8H2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR8H2 MUTATED                                               1
  OR8H2 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR8H2 MUTATED                                0
  OR8H2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR8H2 MUTATED                                    0
  OR8H2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR8H2 MUTATED                              0                             0
  OR8H2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR8H2 MUTATED                                               0
  OR8H2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR8H2 MUTATED                                   0
  OR8H2 WILD-TYPE                                 2
D45V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR8H2 MUTATED     3   5   2   1
  OR8H2 WILD-TYPE  38 103  12   7
D45V6, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR8H2 MUTATED    6  4     1
  OR8H2 WILD-TYPE 89 33    34
D45V7, multiclass
       clus
vv      OR8H2 MUTATED OR8H2 WILD-TYPE
  N0                6              89
  N1                4              33
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR8H2 MUTATED    11   0   0
  OR8H2 WILD-TYPE 126   9  22
D45V8, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  OR8H2 MUTATED    5  3   3  0
  OR8H2 WILD-TYPE 83 30  36  9
D45V9, multiclass
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  I               5              83
  II              3              30
  III             3              36
  IV              0               9
D45V10, binary
                 cls
clus                0   1
  OR8H2 MUTATED     2   9
  OR8H2 WILD-TYPE  14 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      2    9
  OR8H2 WILD-TYPE   14  147
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  NO              2              14
  YES             9             147
D45V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8H2 MUTATED                                             8
  OR8H2 WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8H2 MUTATED                                        3              0
  OR8H2 WILD-TYPE                                     43             28
                 vv
clus              LIFELONG NON-SMOKER
  OR8H2 MUTATED                     0
  OR8H2 WILD-TYPE                  24
D45V12, multiclass
                                             clus
vv                                            OR8H2 MUTATED OR8H2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D45V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR8H2 MUTATED    8  0  0  1
  OR8H2 WILD-TYPE 94  5  4  9
D45V14, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(46) Variable = NRG3 MUTATION ANALYSIS
D46V1, survival
                sevent
clus2             0  1
  NRG3 MUTATED    9  3
  NRG3 WILD-TYPE 90 47
  NRG3 MUTATED NRG3 WILD-TYPE 
            12            137 
  NRG3 MUTATED NRG3 WILD-TYPE 
             3             47 
$`NRG3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        9.96        47.05        30.02        26.01        25.02         5.95 
TCGA-44-2662 TCGA-44-5643 TCGA-44-6145 TCGA-50-5931 TCGA-50-5935 TCGA-73-4668 
       15.78         3.48         3.35         8.78        21.47        15.35 

$`NRG3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NRG3 MUTATED NRG3 WILD-TYPE 
          3.35           0.07 
  NRG3 MUTATED NRG3 WILD-TYPE 
         47.05          85.32 
  NRG3 MUTATED NRG3 WILD-TYPE 
        15.565         13.150 
[1] "3.4 - 47.0 (15.6)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
D46V3, binary
                cls
clus              0  1
  NRG3 MUTATED    6  7
  NRG3 WILD-TYPE 87 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      6    7
  NRG3 WILD-TYPE   87   72
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  FEMALE            6             87
  MALE              7             72
D46V4, continuous
[1] "Remove cluster labels:" "NRG3 MUTATED"          
clus
  NRG3 MUTATED NRG3 WILD-TYPE 
             2             10 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NRG3 MUTATED                            0                                 6
  NRG3 WILD-TYPE                          2                                33
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NRG3 MUTATED                                                    6
  NRG3 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NRG3 MUTATED                                            0
  NRG3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NRG3 MUTATED                                               0
  NRG3 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  NRG3 MUTATED                                0
  NRG3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  NRG3 MUTATED                                    1
  NRG3 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NRG3 MUTATED                              0                             0
  NRG3 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NRG3 MUTATED                                               0
  NRG3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  NRG3 MUTATED                                   0
  NRG3 WILD-TYPE                                 2
D46V5, multiclass
                vv
clus              T1  T2  T3  T4
  NRG3 MUTATED     3   7   1   2
  NRG3 WILD-TYPE  38 101  13   6
D46V6, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  T1            3             38
  T2            7            101
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  NRG3 MUTATED    7  4     2
  NRG3 WILD-TYPE 88 33    33
D46V7, multiclass
       clus
vv      NRG3 MUTATED NRG3 WILD-TYPE
  N0               7             88
  N1               4             33
  N2+N3            2             33
                vv
clus              M0  M1  MX
  NRG3 MUTATED    13   0   0
  NRG3 WILD-TYPE 124   9  22
D46V8, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  M0           13            124
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  NRG3 MUTATED    6  4   3  0
  NRG3 WILD-TYPE 82 29  36  9
D46V9, multiclass
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  I              6             82
  II             4             29
  III            3             36
  IV             0              9
D46V10, binary
                cls
clus               0   1
  NRG3 MUTATED     2  11
  NRG3 WILD-TYPE  14 145
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      2   11
  NRG3 WILD-TYPE   14  145
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  NO             2             14
  YES           11            145
D46V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NRG3 MUTATED                                             6
  NRG3 WILD-TYPE                                          56
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NRG3 MUTATED                                        2              3
  NRG3 WILD-TYPE                                     44             25
                vv
clus             LIFELONG NON-SMOKER
  NRG3 MUTATED                     0
  NRG3 WILD-TYPE                  24
D46V12, multiclass
                                             clus
vv                                            NRG3 MUTATED NRG3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0             24
D46V13, continuous
                vv
clus             R0 R1 R2 RX
  NRG3 MUTATED    7  1  0  1
  NRG3 WILD-TYPE 95  4  4  9
D46V14, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  R0            7             95
  R1            1              4
  R2            0              4
  RX            1              9

Clustering(47) Variable = HEATR7B2 MUTATION ANALYSIS
D47V1, survival
                    sevent
clus2                 0  1
  HEATR7B2 MUTATED   11  7
  HEATR7B2 WILD-TYPE 88 43
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                18                131 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                 7                 43 
$`HEATR7B2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 
       19.92        37.02         9.96        14.93        30.02        26.01 
TCGA-38-4629 TCGA-44-3918 TCGA-44-6776 TCGA-49-4505 TCGA-49-4506 TCGA-49-6743 
       28.37         6.44        63.72        14.07        32.84        12.13 
TCGA-50-5044 TCGA-50-6590 TCGA-64-1676 TCGA-64-5781 TCGA-73-4677 TCGA-91-6831 
       20.48        42.31        56.81        39.52         1.25         1.28 

$`HEATR7B2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        46.72         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.15         0.36 

  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
              1.25               0.07 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
             63.72              85.32 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
            23.245             12.660 
[1] "1.2 - 63.7 (23.2)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, binary
                    cls
clus                  0  1
  HEATR7B2 MUTATED   11  9
  HEATR7B2 WILD-TYPE 82 70
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED     11    9
  HEATR7B2 WILD-TYPE   82   70
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  FEMALE               11                 82
  MALE                  9                 70
D47V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  HEATR7B2 MUTATED                            0
  HEATR7B2 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  HEATR7B2 MUTATED                                   9
  HEATR7B2 WILD-TYPE                                30
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HEATR7B2 MUTATED                                                   10
  HEATR7B2 WILD-TYPE                                                104
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HEATR7B2 MUTATED                                            0
  HEATR7B2 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HEATR7B2 MUTATED                                               0
  HEATR7B2 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  HEATR7B2 MUTATED                                1
  HEATR7B2 WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  HEATR7B2 MUTATED                                    0
  HEATR7B2 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HEATR7B2 MUTATED                              0                             0
  HEATR7B2 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HEATR7B2 MUTATED                                               0
  HEATR7B2 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  HEATR7B2 MUTATED                                   0
  HEATR7B2 WILD-TYPE                                 2
D47V5, multiclass
                    vv
clus                 T1 T2 T3 T4
  HEATR7B2 MUTATED    4 12  2  2
  HEATR7B2 WILD-TYPE 37 96 12  6
D47V6, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  T1                4                 37
  T2               12                 96
  T3                2                 12
  T4                2                  6
                    vv
clus                 N0 N1 N2+N3
  HEATR7B2 MUTATED   14  5     1
  HEATR7B2 WILD-TYPE 81 32    34
D47V7, multiclass
       clus
vv      HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  N0                  14                 81
  N1                   5                 32
  N2+N3                1                 34
                    vv
clus                  M0  M1  MX
  HEATR7B2 MUTATED    17   0   3
  HEATR7B2 WILD-TYPE 120   9  19
D47V8, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  M0               17                120
  M1                0                  9
  MX                3                 19
                    vv
clus                  I II III IV
  HEATR7B2 MUTATED   12  5   3  0
  HEATR7B2 WILD-TYPE 76 28  36  9
D47V9, multiclass
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  I                 12                 76
  II                 5                 28
  III                3                 36
  IV                 0                  9
D47V10, binary
                    cls
clus                   0   1
  HEATR7B2 MUTATED     0  20
  HEATR7B2 WILD-TYPE  16 136
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED      0   20
  HEATR7B2 WILD-TYPE   16  136
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  NO                 0                 16
  YES               20                136
D47V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HEATR7B2 MUTATED                                            12
  HEATR7B2 WILD-TYPE                                          50
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HEATR7B2 MUTATED                                        4              3
  HEATR7B2 WILD-TYPE                                     42             25
                    vv
clus                 LIFELONG NON-SMOKER
  HEATR7B2 MUTATED                     0
  HEATR7B2 WILD-TYPE                  24
D47V12, multiclass
                                             clus
vv                                            HEATR7B2 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            HEATR7B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         24
D47V13, continuous
                    vv
clus                 R0 R1 R2 RX
  HEATR7B2 MUTATED   12  2  0  1
  HEATR7B2 WILD-TYPE 90  3  4  9
D47V14, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  R0               12                 90
  R1                2                  3
  R2                0                  4
  RX                1                  9

Clustering(48) Variable = ZNF268 MUTATION ANALYSIS
D48V1, survival
                  sevent
clus2               0  1
  ZNF268 MUTATED    2  2
  ZNF268 WILD-TYPE 97 48
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               4              145 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2               48 
$`ZNF268 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-55-1592 
       24.03        19.10         6.44        23.05 

$`ZNF268 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZNF268 MUTATED ZNF268 WILD-TYPE 
            6.44             0.07 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           24.03            85.32 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
          21.075           13.150 
[1] "6.4 - 24.0 (21.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
[1] "hr=" "2.2"
D48V2, continuous
D48V3, binary
                  cls
clus                0  1
  ZNF268 MUTATED    1  4
  ZNF268 WILD-TYPE 92 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      1    4
  ZNF268 WILD-TYPE   92   75
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D48V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF268 MUTATED                            0                                 1
  ZNF268 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF268 MUTATED                                                    4
  ZNF268 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF268 MUTATED                                            0
  ZNF268 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF268 MUTATED                                0
  ZNF268 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                                    0
  ZNF268 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                              0                             0
  ZNF268 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  ZNF268 MUTATED                                   0
  ZNF268 WILD-TYPE                                 2
D48V5, multiclass
                  vv
clus                T1  T2  T3  T4
  ZNF268 MUTATED     1   4   0   0
  ZNF268 WILD-TYPE  40 104  14   8
D48V6, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ZNF268 MUTATED    3  1     1
  ZNF268 WILD-TYPE 92 36    34
D48V7, multiclass
       clus
vv      ZNF268 MUTATED ZNF268 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZNF268 MUTATED     4   1   0
  ZNF268 WILD-TYPE 133   8  22
D48V8, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
                  vv
clus                I II III IV
  ZNF268 MUTATED    3  1   0  1
  ZNF268 WILD-TYPE 85 32  39  8
D48V9, multiclass
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  I                3               85
  II               1               32
  III              0               39
  IV               1                8
D48V10, binary
                  cls
clus                 0   1
  ZNF268 MUTATED     0   5
  ZNF268 WILD-TYPE  16 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   16  151
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               16
  YES              5              151
D48V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF268 MUTATED                                             3
  ZNF268 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF268 MUTATED                                        1              1
  ZNF268 WILD-TYPE                                     45             27
                  vv
clus               LIFELONG NON-SMOKER
  ZNF268 MUTATED                     0
  ZNF268 WILD-TYPE                  24
D48V12, multiclass
                                             clus
vv                                            ZNF268 MUTATED ZNF268 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D48V13, continuous
                  vv
clus               R0 R1 R2 RX
  ZNF268 MUTATED    3  0  0  1
  ZNF268 WILD-TYPE 99  5  4  9
D48V14, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  R0              3               99
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(49) Variable = OR5I1 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  OR5I1 MUTATED    5  3
  OR5I1 WILD-TYPE 94 47
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              8             141 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              3              47 
$`OR5I1 MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-05-4424 TCGA-44-6144 TCGA-49-6742 TCGA-50-5933 
        9.96         8.98        30.02         0.30        15.02        77.88 
TCGA-50-5941 TCGA-64-5781 
        9.37        39.52 

$`OR5I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR5I1 MUTATED OR5I1 WILD-TYPE 
           0.30            0.07 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          77.88           85.32 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          12.49           13.87 
[1] "0.3 - 77.9 (12.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
                 cls
clus               0  1
  OR5I1 MUTATED    3  8
  OR5I1 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      3    8
  OR5I1 WILD-TYPE   90   71
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D49V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5I1 MUTATED                            0                                 5
  OR5I1 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5I1 MUTATED                                                    5
  OR5I1 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5I1 MUTATED                                            0
  OR5I1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5I1 MUTATED                                0
  OR5I1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                                    0
  OR5I1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                              0                             0
  OR5I1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5I1 MUTATED                                   1
  OR5I1 WILD-TYPE                                 1
D49V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5I1 MUTATED     2   4   3   2
  OR5I1 WILD-TYPE  39 104  11   6
D49V6, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             3              11
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  OR5I1 MUTATED    4  3     4
  OR5I1 WILD-TYPE 91 34    31
D49V7, multiclass
       clus
vv      OR5I1 MUTATED OR5I1 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  OR5I1 MUTATED    10   0   1
  OR5I1 WILD-TYPE 127   9  21
D49V8, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR5I1 MUTATED    3  3   5  0
  OR5I1 WILD-TYPE 85 30  34  9
D49V9, multiclass
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  I               3              85
  II              3              30
  III             5              34
  IV              0               9
D49V10, binary
                 cls
clus                0   1
  OR5I1 MUTATED     1  10
  OR5I1 WILD-TYPE  15 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      1   10
  OR5I1 WILD-TYPE   15  146
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              1              15
  YES            10             146
D49V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5I1 MUTATED                                             3
  OR5I1 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5I1 MUTATED                                        3              3
  OR5I1 WILD-TYPE                                     43             25
                 vv
clus              LIFELONG NON-SMOKER
  OR5I1 MUTATED                     1
  OR5I1 WILD-TYPE                  23
D49V12, multiclass
                                             clus
vv                                            OR5I1 MUTATED OR5I1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D49V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR5I1 MUTATED    6  1  0  1
  OR5I1 WILD-TYPE 96  4  4  9
D49V14, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  R0             6              96
  R1             1               4
  R2             0               4
  RX             1               9

Clustering(50) Variable = KCNT2 MUTATION ANALYSIS
D50V1, survival
                 sevent
clus2              0  1
  KCNT2 MUTATED   12  2
  KCNT2 WILD-TYPE 87 48
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             14             135 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              2              48 
$`KCNT2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 
       19.92        37.02         9.96        30.02        26.01        25.02 
TCGA-38-4632 TCGA-44-2668 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 
       44.61         8.09        43.20        15.02        12.13        48.82 
TCGA-64-1676 TCGA-91-6836 
       56.81         0.36 

$`KCNT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        29.75        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  KCNT2 MUTATED KCNT2 WILD-TYPE 
           0.36            0.07 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
          56.81           85.32 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
         25.515          12.990 
[1] "0.4 - 56.8 (25.5)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
[1] "hr=" "3.6"
D50V2, continuous
D50V3, binary
                 cls
clus               0  1
  KCNT2 MUTATED    6 11
  KCNT2 WILD-TYPE 87 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      6   11
  KCNT2 WILD-TYPE   87   68
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  FEMALE             6              87
  MALE              11              68
D50V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KCNT2 MUTATED                            0                                 7
  KCNT2 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KCNT2 MUTATED                                                    7
  KCNT2 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KCNT2 MUTATED                                            0
  KCNT2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KCNT2 MUTATED                                               0
  KCNT2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KCNT2 MUTATED                                1
  KCNT2 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KCNT2 MUTATED                                    0
  KCNT2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KCNT2 MUTATED                              0                             1
  KCNT2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KCNT2 MUTATED                                               0
  KCNT2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  KCNT2 MUTATED                                   1
  KCNT2 WILD-TYPE                                 1
D50V5, multiclass
                 vv
clus              T1 T2 T3 T4
  KCNT2 MUTATED    3 11  2  1
  KCNT2 WILD-TYPE 38 97 12  7
D50V6, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  T1             3              38
  T2            11              97
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  KCNT2 MUTATED   10  5     2
  KCNT2 WILD-TYPE 85 32    33
D50V7, multiclass
       clus
vv      KCNT2 MUTATED KCNT2 WILD-TYPE
  N0               10              85
  N1                5              32
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  KCNT2 MUTATED    11   2   4
  KCNT2 WILD-TYPE 126   7  18
D50V8, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  M0            11             126
  M1             2               7
  MX             4              18
                 vv
clus               I II III IV
  KCNT2 MUTATED    8  5   2  2
  KCNT2 WILD-TYPE 80 28  37  7
D50V9, multiclass
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  I               8              80
  II              5              28
  III             2              37
  IV              2               7
D50V10, binary
                 cls
clus                0   1
  KCNT2 MUTATED     1  16
  KCNT2 WILD-TYPE  15 140
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      1   16
  KCNT2 WILD-TYPE   15  140
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  NO              1              15
  YES            16             140
D50V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KCNT2 MUTATED                                             9
  KCNT2 WILD-TYPE                                          53
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KCNT2 MUTATED                                        3              4
  KCNT2 WILD-TYPE                                     43             24
                 vv
clus              LIFELONG NON-SMOKER
  KCNT2 MUTATED                     0
  KCNT2 WILD-TYPE                  24
D50V12, multiclass
                                             clus
vv                                            KCNT2 MUTATED KCNT2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D50V13, continuous
                 vv
clus              R0 R1 R2 RX
  KCNT2 MUTATED    9  1  0  3
  KCNT2 WILD-TYPE 93  4  4  7
D50V14, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  R0             9              93
  R1             1               4
  R2             0               4
  RX             3               7

Clustering(51) Variable = HGF MUTATION ANALYSIS
D51V1, survival
               sevent
clus2            0  1
  HGF MUTATED    9  4
  HGF WILD-TYPE 90 46
  HGF MUTATED HGF WILD-TYPE 
           13           136 
  HGF MUTATED HGF WILD-TYPE 
            4            46 
$`HGF MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-38-4632 
       19.92         9.96        29.95        30.02        26.01        44.61 
TCGA-44-2659 TCGA-44-3918 TCGA-44-4112 TCGA-49-4506 TCGA-50-5049 TCGA-64-1676 
       17.39         6.44         4.60        32.84        48.82        56.81 
TCGA-91-6829 
       41.33 

$`HGF WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  HGF MUTATED HGF WILD-TYPE 
         4.60          0.07 
  HGF MUTATED HGF WILD-TYPE 
        56.81         85.32 
  HGF MUTATED HGF WILD-TYPE 
       29.950        12.825 
[1] "4.6 - 56.8 (29.9)" "0.1 - 85.3 (12.8)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
[1] "hr=" "1.7"
D51V2, continuous
D51V3, binary
               cls
clus             0  1
  HGF MUTATED    5 11
  HGF WILD-TYPE 88 68
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      5   11
  HGF WILD-TYPE   88   68
        clus
vv       HGF MUTATED HGF WILD-TYPE
  FEMALE           5            88
  MALE            11            68
D51V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HGF MUTATED                            0                                 8
  HGF WILD-TYPE                          2                                31
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HGF MUTATED                                                    7
  HGF WILD-TYPE                                                107
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HGF MUTATED                                            0
  HGF WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HGF MUTATED                                               1
  HGF WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  HGF MUTATED                                0
  HGF WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  HGF MUTATED                                    0                            0
  HGF WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  HGF MUTATED                               0
  HGF WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HGF MUTATED                                               0
  HGF WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  HGF MUTATED                                   0
  HGF WILD-TYPE                                 2
D51V5, multiclass
               vv
clus            T1 T2 T3 T4
  HGF MUTATED    4 10  1  1
  HGF WILD-TYPE 37 98 13  7
D51V6, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  T1           4            37
  T2          10            98
  T3           1            13
  T4           1             7
               vv
clus            N0 N1 N2+N3
  HGF MUTATED   10  6     0
  HGF WILD-TYPE 85 31    35
D51V7, multiclass
       clus
vv      HGF MUTATED HGF WILD-TYPE
  N0             10            85
  N1              6            31
  N2+N3           0            35
               vv
clus             M0  M1  MX
  HGF MUTATED    14   1   1
  HGF WILD-TYPE 123   8  21
D51V8, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  M0          14           123
  M1           1             8
  MX           1            21
               vv
clus             I II III IV
  HGF MUTATED    9  5   1  1
  HGF WILD-TYPE 79 28  38  8
D51V9, multiclass
     clus
vv    HGF MUTATED HGF WILD-TYPE
  I             9            79
  II            5            28
  III           1            38
  IV            1             8
D51V10, binary
               cls
clus              0   1
  HGF MUTATED     1  15
  HGF WILD-TYPE  15 141
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      1   15
  HGF WILD-TYPE   15  141
     clus
vv    HGF MUTATED HGF WILD-TYPE
  NO            1            15
  YES          15           141
D51V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HGF MUTATED                                             8
  HGF WILD-TYPE                                          54
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HGF MUTATED                                        4              3
  HGF WILD-TYPE                                     42             25
               vv
clus            LIFELONG NON-SMOKER
  HGF MUTATED                     0
  HGF WILD-TYPE                  24
D51V12, multiclass
                                             clus
vv                                            HGF MUTATED HGF WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8            54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            42
  CURRENT SMOKER                                        3            25
  LIFELONG NON-SMOKER                                   0            24
D51V13, continuous
               vv
clus            R0 R1 R2 RX
  HGF MUTATED   11  2  0  1
  HGF WILD-TYPE 91  3  4  9
D51V14, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  R0          11            91
  R1           2             3
  R2           0             4
  RX           1             9

Clustering(52) Variable = THEMIS MUTATION ANALYSIS
D52V1, survival
                  sevent
clus2               0  1
  THEMIS MUTATED    4  4
  THEMIS WILD-TYPE 95 46
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              141 
  THEMIS MUTATED THEMIS WILD-TYPE 
               4               46 
$`THEMIS MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-35-4123 TCGA-44-4112 TCGA-49-4501 TCGA-55-1592 
        9.96         8.98         5.95         4.60        46.72        23.05 
TCGA-67-3772 TCGA-73-4670 
        0.59         0.46 

$`THEMIS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  THEMIS MUTATED THEMIS WILD-TYPE 
            0.46             0.07 
  THEMIS MUTATED THEMIS WILD-TYPE 
           46.72            85.32 
  THEMIS MUTATED THEMIS WILD-TYPE 
           7.465           14.070 
[1] "0.5 - 46.7 (7.5)"  "0.1 - 85.3 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
[1] "hr=" "2.7"
D52V2, continuous
D52V3, binary
                  cls
clus                0  1
  THEMIS MUTATED    4  6
  THEMIS WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      4    6
  THEMIS WILD-TYPE   89   73
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D52V4, continuous
[1] "Remove cluster labels:" "THEMIS MUTATED"        
clus
  THEMIS MUTATED THEMIS WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  THEMIS MUTATED                            0                                 3
  THEMIS WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  THEMIS MUTATED                                                    7
  THEMIS WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  THEMIS MUTATED                                            0
  THEMIS WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  THEMIS MUTATED                                0
  THEMIS WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                                    0
  THEMIS WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                              0                             0
  THEMIS WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  THEMIS MUTATED                                   0
  THEMIS WILD-TYPE                                 2
D52V5, multiclass
                  vv
clus                T1  T2  T3  T4
  THEMIS MUTATED     1   7   1   1
  THEMIS WILD-TYPE  40 101  13   7
D52V6, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  T1              1               40
  T2              7              101
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  THEMIS MUTATED    8  1     1
  THEMIS WILD-TYPE 87 36    34
D52V7, multiclass
       clus
vv      THEMIS MUTATED THEMIS WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  THEMIS MUTATED     9   1   0
  THEMIS WILD-TYPE 128   8  22
D52V8, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  M0              9              128
  M1              1                8
  MX              0               22
                  vv
clus                I II III IV
  THEMIS MUTATED    7  0   2  1
  THEMIS WILD-TYPE 81 33  37  8
D52V9, multiclass
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               1                8
D52V10, binary
                  cls
clus                 0   1
  THEMIS MUTATED     0  10
  THEMIS WILD-TYPE  16 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      0   10
  THEMIS WILD-TYPE   16  146
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               0               16
  YES             10              146
D52V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  THEMIS MUTATED                                             4
  THEMIS WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  THEMIS MUTATED                                        3              1
  THEMIS WILD-TYPE                                     43             27
                  vv
clus               LIFELONG NON-SMOKER
  THEMIS MUTATED                     2
  THEMIS WILD-TYPE                  22
D52V12, multiclass
                                             clus
vv                                            THEMIS MUTATED THEMIS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      2               22
D52V13, continuous
                  vv
clus               R0 R1 R2 RX
  THEMIS MUTATED    8  0  0  1
  THEMIS WILD-TYPE 94  5  4  9
D52V14, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  R0              8               94
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(53) Variable = IL1RAPL1 MUTATION ANALYSIS
D53V1, survival
                    sevent
clus2                 0  1
  IL1RAPL1 MUTATED    5  5
  IL1RAPL1 WILD-TYPE 94 45
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                10                139 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 5                 45 
$`IL1RAPL1 MUTATED`
TCGA-38-4626 TCGA-38-4632 TCGA-44-2662 TCGA-44-2665 TCGA-44-6774 TCGA-49-4488 
       85.32        44.61        15.78        13.15         5.42        28.57 
TCGA-49-4505 TCGA-50-5931 TCGA-64-1677 TCGA-67-3774 
       14.07         8.78        20.65         0.59 

$`IL1RAPL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
              0.59               0.07 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
             85.32              83.84 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            14.925             13.150 
[1] "0.6 - 85.3 (14.9)" "0.1 - 83.8 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
                    cls
clus                  0  1
  IL1RAPL1 MUTATED    8  3
  IL1RAPL1 WILD-TYPE 85 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      8    3
  IL1RAPL1 WILD-TYPE   85   76
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  FEMALE                8                 85
  MALE                  3                 76
D53V4, continuous
[1] "Remove cluster labels:" "IL1RAPL1 MUTATED"      
clus
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  IL1RAPL1 MUTATED                            0
  IL1RAPL1 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  IL1RAPL1 MUTATED                                   1
  IL1RAPL1 WILD-TYPE                                38
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IL1RAPL1 MUTATED                                                   10
  IL1RAPL1 WILD-TYPE                                                104
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IL1RAPL1 MUTATED                                            0
  IL1RAPL1 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  IL1RAPL1 MUTATED                                0
  IL1RAPL1 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                                    0
  IL1RAPL1 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                              0                             0
  IL1RAPL1 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  IL1RAPL1 MUTATED                                   0
  IL1RAPL1 WILD-TYPE                                 2
D53V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  IL1RAPL1 MUTATED     3   8   0   0
  IL1RAPL1 WILD-TYPE  38 100  14   8
D53V6, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  T1                3                 38
  T2                8                100
  T3                0                 14
  T4                0                  8
                    vv
clus                 N0 N1 N2+N3
  IL1RAPL1 MUTATED    5  4     2
  IL1RAPL1 WILD-TYPE 90 33    33
D53V7, multiclass
       clus
vv      IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  N0                   5                 90
  N1                   4                 33
  N2+N3                2                 33
                    vv
clus                  M0  M1  MX
  IL1RAPL1 MUTATED     9   1   1
  IL1RAPL1 WILD-TYPE 128   8  21
D53V8, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  M0                9                128
  M1                1                  8
  MX                1                 21
                    vv
clus                  I II III IV
  IL1RAPL1 MUTATED    4  4   2  1
  IL1RAPL1 WILD-TYPE 84 29  37  8
D53V9, multiclass
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  I                  4                 84
  II                 4                 29
  III                2                 37
  IV                 1                  8
D53V10, binary
                    cls
clus                   0   1
  IL1RAPL1 MUTATED     0  11
  IL1RAPL1 WILD-TYPE  16 145
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      0   11
  IL1RAPL1 WILD-TYPE   16  145
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 0                 16
  YES               11                145
D53V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  IL1RAPL1 MUTATED                                             2
  IL1RAPL1 WILD-TYPE                                          60
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  IL1RAPL1 MUTATED                                        4              3
  IL1RAPL1 WILD-TYPE                                     42             25
                    vv
clus                 LIFELONG NON-SMOKER
  IL1RAPL1 MUTATED                     1
  IL1RAPL1 WILD-TYPE                  23
D53V12, multiclass
                                             clus
vv                                            IL1RAPL1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            IL1RAPL1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         23
D53V13, continuous
                    vv
clus                 R0 R1 R2 RX
  IL1RAPL1 MUTATED    8  0  0  0
  IL1RAPL1 WILD-TYPE 94  5  4 10
D53V14, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  R0                8                 94
  R1                0                  5
  R2                0                  4
  RX                0                 10

Clustering(54) Variable = ADAMTS2 MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                0  1
  ADAMTS2 MUTATED    8  4
  ADAMTS2 WILD-TYPE 91 46
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               12               137 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                4                46 
$`ADAMTS2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4427 TCGA-44-3396 TCGA-44-4112 
       19.92        37.02        24.03        26.01        10.22         4.60 
TCGA-44-6777 TCGA-50-6593 TCGA-55-6642 TCGA-64-1676 TCGA-73-4659 TCGA-91-6831 
       32.45        11.05        32.61        56.81        23.38         1.28 

$`ADAMTS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01         9.96        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 
       48.62        45.17         2.86         0.07         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
             1.28              0.07 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            56.81             85.32 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
           23.705            13.150 
[1] "1.3 - 56.8 (23.7)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
D54V3, binary
                   cls
clus                 0  1
  ADAMTS2 MUTATED    6  8
  ADAMTS2 WILD-TYPE 87 71
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      6    8
  ADAMTS2 WILD-TYPE   87   71
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  FEMALE               6                87
  MALE                 8                71
D54V4, continuous
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ADAMTS2 MUTATED                            0
  ADAMTS2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS2 MUTATED                                   6
  ADAMTS2 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS2 MUTATED                                                    8
  ADAMTS2 WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS2 MUTATED                                            0
  ADAMTS2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS2 MUTATED                                               0
  ADAMTS2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS2 MUTATED                                0
  ADAMTS2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS2 MUTATED                                    0
  ADAMTS2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS2 MUTATED                              0                             0
  ADAMTS2 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS2 MUTATED                                               0
  ADAMTS2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  ADAMTS2 MUTATED                                   0
  ADAMTS2 WILD-TYPE                                 2
D54V5, multiclass
                   vv
clus                T1 T2 T3 T4
  ADAMTS2 MUTATED    2 11  0  1
  ADAMTS2 WILD-TYPE 39 97 14  7
D54V6, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  T1               2                39
  T2              11                97
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  ADAMTS2 MUTATED    7  2     4
  ADAMTS2 WILD-TYPE 88 35    31
D54V7, multiclass
       clus
vv      ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               4                31
                   vv
clus                 M0  M1  MX
  ADAMTS2 MUTATED    11   0   3
  ADAMTS2 WILD-TYPE 126   9  19
D54V8, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               3                19
                   vv
clus                 I II III IV
  ADAMTS2 MUTATED    8  2   4  0
  ADAMTS2 WILD-TYPE 80 31  35  9
D54V9, multiclass
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  I                 8                80
  II                2                31
  III               4                35
  IV                0                 9
D54V10, binary
                   cls
clus                  0   1
  ADAMTS2 MUTATED     1  13
  ADAMTS2 WILD-TYPE  15 143
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      1   13
  ADAMTS2 WILD-TYPE   15  143
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  NO                1                15
  YES              13               143
D54V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ADAMTS2 MUTATED                                             5
  ADAMTS2 WILD-TYPE                                          57
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ADAMTS2 MUTATED                                        3              5
  ADAMTS2 WILD-TYPE                                     43             23
                   vv
clus                LIFELONG NON-SMOKER
  ADAMTS2 MUTATED                     1
  ADAMTS2 WILD-TYPE                  23
D54V12, multiclass
                                             clus
vv                                            ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            5                23
  LIFELONG NON-SMOKER                                       1                23
D54V13, continuous
                   vv
clus                R0 R1 R2 RX
  ADAMTS2 MUTATED   10  0  0  0
  ADAMTS2 WILD-TYPE 92  5  4 10
D54V14, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  R0              10                92
  R1               0                 5
  R2               0                 4
  RX               0                10

Clustering(55) Variable = SPANXN2 MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  SPANXN2 MUTATED    3  3
  SPANXN2 WILD-TYPE 96 47
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                6               143 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                3                47 
$`SPANXN2 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-44-3918 TCGA-55-1592 
       37.02         9.96        24.03        26.01         6.44        23.05 

$`SPANXN2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
             6.44              0.07 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            37.02             85.32 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            23.54             13.15 
[1] "6.4 - 37.0 (23.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
[1] "hr=" "1.7"
D55V2, continuous
D55V3, binary
                   cls
clus                 0  1
  SPANXN2 MUTATED    3  4
  SPANXN2 WILD-TYPE 90 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      3    4
  SPANXN2 WILD-TYPE   90   75
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D55V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SPANXN2 MUTATED                            0
  SPANXN2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPANXN2 MUTATED                                   5
  SPANXN2 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPANXN2 MUTATED                                                    2
  SPANXN2 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPANXN2 MUTATED                                            0
  SPANXN2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPANXN2 MUTATED                                               0
  SPANXN2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SPANXN2 MUTATED                                0
  SPANXN2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SPANXN2 MUTATED                                    0
  SPANXN2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPANXN2 MUTATED                              0                             0
  SPANXN2 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPANXN2 MUTATED                                               0
  SPANXN2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  SPANXN2 MUTATED                                   0
  SPANXN2 WILD-TYPE                                 2
D55V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  SPANXN2 MUTATED     1   5   0   1
  SPANXN2 WILD-TYPE  40 103  14   7
D55V6, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  SPANXN2 MUTATED    4  3     0
  SPANXN2 WILD-TYPE 91 34    35
D55V7, multiclass
       clus
vv      SPANXN2 MUTATED SPANXN2 WILD-TYPE
  N0                  4                91
  N1                  3                34
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  SPANXN2 MUTATED     7   0   0
  SPANXN2 WILD-TYPE 130   9  22
D55V8, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
                   vv
clus                 I II III IV
  SPANXN2 MUTATED    4  2   1  0
  SPANXN2 WILD-TYPE 84 31  38  9
D55V9, multiclass
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D55V10, binary
                   cls
clus                  0   1
  SPANXN2 MUTATED     0   7
  SPANXN2 WILD-TYPE  16 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      0    7
  SPANXN2 WILD-TYPE   16  149
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  NO                0                16
  YES               7               149
D55V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPANXN2 MUTATED                                             4
  SPANXN2 WILD-TYPE                                          58
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPANXN2 MUTATED                                        2              1
  SPANXN2 WILD-TYPE                                     44             27
                   vv
clus                LIFELONG NON-SMOKER
  SPANXN2 MUTATED                     0
  SPANXN2 WILD-TYPE                  24
D55V12, multiclass
                                             clus
vv                                            SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D55V13, continuous
                   vv
clus                R0 R1 R2 RX
  SPANXN2 MUTATED    6  0  0  1
  SPANXN2 WILD-TYPE 96  5  4  9
D55V14, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  R0               6                96
  R1               0                 5
  R2               0                 4
  RX               1                 9

Clustering(56) Variable = GBA3 MUTATION ANALYSIS
D56V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    3  5
  GBA3 WILD-TYPE 96 45
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            141 
  GBA3 MUTATED GBA3 WILD-TYPE 
             5             45 
$`GBA3 MUTATED`
TCGA-38-4631 TCGA-44-6145 TCGA-49-4514 TCGA-50-5931 TCGA-64-5778 TCGA-73-4658 
       11.64         3.35        43.20         8.78        30.44        52.57 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`GBA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GBA3 MUTATED GBA3 WILD-TYPE 
          1.25           0.07 
  GBA3 MUTATED GBA3 WILD-TYPE 
         52.57          85.32 
  GBA3 MUTATED GBA3 WILD-TYPE 
         21.04          13.87 
[1] "1.2 - 52.6 (21.0)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
[1] "hr=" "1.5"
D56V2, continuous
D56V3, binary
                cls
clus              0  1
  GBA3 MUTATED    5  3
  GBA3 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      5    3
  GBA3 WILD-TYPE   88   76
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D56V4, continuous
[1] "Remove cluster labels:" "GBA3 MUTATED"          
clus
  GBA3 MUTATED GBA3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GBA3 MUTATED                            0                                 0
  GBA3 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GBA3 MUTATED                                                    5
  GBA3 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GBA3 MUTATED                                            0
  GBA3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GBA3 MUTATED                                               2
  GBA3 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GBA3 MUTATED                                0
  GBA3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                                    0
  GBA3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                              0                             1
  GBA3 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GBA3 MUTATED                                               0
  GBA3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  GBA3 MUTATED                                   0
  GBA3 WILD-TYPE                                 2
D56V5, multiclass
                vv
clus              T1  T2  T3  T4
  GBA3 MUTATED     2   6   0   0
  GBA3 WILD-TYPE  39 102  14   8
D56V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  GBA3 MUTATED    8  0     0
  GBA3 WILD-TYPE 87 37    35
D56V7, multiclass
       clus
vv      GBA3 MUTATED GBA3 WILD-TYPE
  N0               8             87
  N1               0             37
  N2+N3            0             35
                vv
clus              M0  M1  MX
  GBA3 MUTATED     7   0   1
  GBA3 WILD-TYPE 130   9  21
D56V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            7            130
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  GBA3 MUTATED    8  0   0  0
  GBA3 WILD-TYPE 80 33  39  9
D56V9, multiclass
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  I              8             80
  II             0             33
  III            0             39
  IV             0              9
D56V10, binary
                cls
clus               0   1
  GBA3 MUTATED     0   8
  GBA3 WILD-TYPE  16 148
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   16  148
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             16
  YES            8            148
D56V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GBA3 MUTATED                                             4
  GBA3 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GBA3 MUTATED                                        3              0
  GBA3 WILD-TYPE                                     43             28
                vv
clus             LIFELONG NON-SMOKER
  GBA3 MUTATED                     0
  GBA3 WILD-TYPE                  24
D56V12, multiclass
                                             clus
vv                                            GBA3 MUTATED GBA3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D56V13, continuous
                vv
clus             R0 R1 R2 RX
  GBA3 MUTATED    4  0  0  1
  GBA3 WILD-TYPE 98  5  4  9
D56V14, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  R0            4             98
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(57) Variable = CPXCR1 MUTATION ANALYSIS
D57V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    7  0
  CPXCR1 WILD-TYPE 92 50
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               7              142 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               50 
$`CPXCR1 MUTATED`
TCGA-05-4427 TCGA-44-4112 TCGA-44-6774 TCGA-44-6778 TCGA-64-1678 TCGA-67-3771 
       26.01         4.60         5.42        36.49        39.09         1.97 
TCGA-73-4662 
       29.95 

$`CPXCR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            1.97             0.07 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           39.09            85.32 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           26.01            13.51 
[1] "2.0 - 39.1 (26.0)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D57V2, continuous
D57V3, binary
                  cls
clus                0  1
  CPXCR1 MUTATED    8  2
  CPXCR1 WILD-TYPE 85 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      8    2
  CPXCR1 WILD-TYPE   85   77
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              8               85
  MALE                2               77
D57V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CPXCR1 MUTATED                            0                                 2
  CPXCR1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CPXCR1 MUTATED                                                    8
  CPXCR1 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CPXCR1 MUTATED                                            0
  CPXCR1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CPXCR1 MUTATED                                               0
  CPXCR1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CPXCR1 MUTATED                                0
  CPXCR1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CPXCR1 MUTATED                                    0
  CPXCR1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CPXCR1 MUTATED                              0                             0
  CPXCR1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CPXCR1 MUTATED                                               0
  CPXCR1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CPXCR1 MUTATED                                   0
  CPXCR1 WILD-TYPE                                 2
D57V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CPXCR1 MUTATED     4   5   1   0
  CPXCR1 WILD-TYPE  37 103  13   8
D57V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CPXCR1 MUTATED    8  1     1
  CPXCR1 WILD-TYPE 87 36    34
D57V7, multiclass
       clus
vv      CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  CPXCR1 MUTATED     8   0   2
  CPXCR1 WILD-TYPE 129   9  20
D57V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  CPXCR1 MUTATED    6  3   1  0
  CPXCR1 WILD-TYPE 82 30  38  9
D57V9, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                6               82
  II               3               30
  III              1               38
  IV               0                9
D57V10, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     1   9
  CPXCR1 WILD-TYPE  15 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    9
  CPXCR1 WILD-TYPE   15  147
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               1               15
  YES              9              147
D57V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CPXCR1 MUTATED                                             4
  CPXCR1 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CPXCR1 MUTATED                                        3              3
  CPXCR1 WILD-TYPE                                     43             25
                  vv
clus               LIFELONG NON-SMOKER
  CPXCR1 MUTATED                     0
  CPXCR1 WILD-TYPE                  24
D57V12, multiclass
                                             clus
vv                                            CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D57V13, continuous
                  vv
clus               R0 R1 R2 RX
  CPXCR1 MUTATED    7  0  0  1
  CPXCR1 WILD-TYPE 95  5  4  9
D57V14, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  R0              7               95
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(58) Variable = TBX15 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  TBX15 MUTATED    4  6
  TBX15 WILD-TYPE 95 44
  TBX15 MUTATED TBX15 WILD-TYPE 
             10             139 
  TBX15 MUTATED TBX15 WILD-TYPE 
              6              44 
$`TBX15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4630 TCGA-38-4632 TCGA-44-2666 
        9.96        47.05        26.01        35.28        44.61         3.19 
TCGA-49-4488 TCGA-64-5779 TCGA-73-4662 TCGA-91-6829 
       28.57        16.67        29.95        41.33 

$`TBX15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX15 MUTATED TBX15 WILD-TYPE 
           3.19            0.07 
  TBX15 MUTATED TBX15 WILD-TYPE 
          47.05           85.32 
  TBX15 MUTATED TBX15 WILD-TYPE 
          29.26           12.99 
[1] "3.2 - 47.0 (29.3)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
                 cls
clus               0  1
  TBX15 MUTATED    5  6
  TBX15 WILD-TYPE 88 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      5    6
  TBX15 WILD-TYPE   88   73
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  FEMALE             5              88
  MALE               6              73
D58V4, continuous
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX15 MUTATED                            1                                 4
  TBX15 WILD-TYPE                          1                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX15 MUTATED                                                    4
  TBX15 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX15 MUTATED                                            0
  TBX15 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX15 MUTATED                                               1
  TBX15 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX15 MUTATED                                0
  TBX15 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                                    0
  TBX15 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                              0                             1
  TBX15 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX15 MUTATED                                               0
  TBX15 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  TBX15 MUTATED                                   0
  TBX15 WILD-TYPE                                 2
D58V5, multiclass
                 vv
clus               T1  T2  T3  T4
  TBX15 MUTATED     2   6   0   3
  TBX15 WILD-TYPE  39 102  14   5
D58V6, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  TBX15 MUTATED    5  3     3
  TBX15 WILD-TYPE 90 34    32
D58V7, multiclass
       clus
vv      TBX15 MUTATED TBX15 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  TBX15 MUTATED     7   1   2
  TBX15 WILD-TYPE 130   8  20
D58V8, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             2              20
                 vv
clus               I II III IV
  TBX15 MUTATED    5  1   4  1
  TBX15 WILD-TYPE 83 32  35  8
D58V9, multiclass
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  I               5              83
  II              1              32
  III             4              35
  IV              1               8
D58V10, binary
                 cls
clus                0   1
  TBX15 MUTATED     1  10
  TBX15 WILD-TYPE  15 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      1   10
  TBX15 WILD-TYPE   15  146
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              1              15
  YES            10             146
D58V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TBX15 MUTATED                                             4
  TBX15 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TBX15 MUTATED                                        3              2
  TBX15 WILD-TYPE                                     43             26
                 vv
clus              LIFELONG NON-SMOKER
  TBX15 MUTATED                     2
  TBX15 WILD-TYPE                  22
D58V12, multiclass
                                             clus
vv                                            TBX15 MUTATED TBX15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D58V13, continuous
                 vv
clus              R0 R1 R2 RX
  TBX15 MUTATED    9  1  0  0
  TBX15 WILD-TYPE 93  4  4 10
D58V14, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  R0             9              93
  R1             1               4
  R2             0               4
  RX             0              10

Clustering(59) Variable = WDR49 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  WDR49 MUTATED    4  3
  WDR49 WILD-TYPE 95 47
  WDR49 MUTATED WDR49 WILD-TYPE 
              7             142 
  WDR49 MUTATED WDR49 WILD-TYPE 
              3              47 
$`WDR49 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-49-6743 TCGA-50-5045 TCGA-50-6590 TCGA-73-4666 
        9.96        25.02        12.13        71.47        42.31        20.28 
TCGA-73-4670 
        0.46 

$`WDR49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  WDR49 MUTATED WDR49 WILD-TYPE 
           0.46            0.07 
  WDR49 MUTATED WDR49 WILD-TYPE 
          71.47           85.32 
  WDR49 MUTATED WDR49 WILD-TYPE 
          20.28           13.51 
[1] "0.5 - 71.5 (20.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
[1] "hr=" "1"  
D59V2, continuous
D59V3, binary
                 cls
clus               0  1
  WDR49 MUTATED    6  3
  WDR49 WILD-TYPE 87 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      6    3
  WDR49 WILD-TYPE   87   76
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D59V4, continuous
[1] "Remove cluster labels:" "WDR49 MUTATED"         
clus
  WDR49 MUTATED WDR49 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  WDR49 MUTATED                            0                                 3
  WDR49 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  WDR49 MUTATED                                                    5
  WDR49 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  WDR49 MUTATED                                            0
  WDR49 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  WDR49 MUTATED                                               0
  WDR49 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  WDR49 MUTATED                                1
  WDR49 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  WDR49 MUTATED                                    0
  WDR49 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  WDR49 MUTATED                              0                             0
  WDR49 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  WDR49 MUTATED                                               0
  WDR49 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  WDR49 MUTATED                                   0
  WDR49 WILD-TYPE                                 2
D59V5, multiclass
                 vv
clus               T1  T2  T3  T4
  WDR49 MUTATED     2   6   0   1
  WDR49 WILD-TYPE  39 102  14   7
D59V6, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  WDR49 MUTATED    5  3     1
  WDR49 WILD-TYPE 90 34    34
D59V7, multiclass
       clus
vv      WDR49 MUTATED WDR49 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  WDR49 MUTATED     6   2   1
  WDR49 WILD-TYPE 131   7  21
D59V8, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  M0             6             131
  M1             2               7
  MX             1              21
                 vv
clus               I II III IV
  WDR49 MUTATED    4  1   2  2
  WDR49 WILD-TYPE 84 32  37  7
D59V9, multiclass
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              2               7
D59V10, binary
                 cls
clus                0   1
  WDR49 MUTATED     2   7
  WDR49 WILD-TYPE  14 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      2    7
  WDR49 WILD-TYPE   14  149
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  NO              2              14
  YES             7             149
D59V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  WDR49 MUTATED                                             5
  WDR49 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  WDR49 MUTATED                                        1              2
  WDR49 WILD-TYPE                                     45             26
                 vv
clus              LIFELONG NON-SMOKER
  WDR49 MUTATED                     0
  WDR49 WILD-TYPE                  24
D59V12, multiclass
                                             clus
vv                                            WDR49 MUTATED WDR49 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D59V13, continuous
                 vv
clus              R0 R1 R2 RX
  WDR49 MUTATED    5  0  0  1
  WDR49 WILD-TYPE 97  5  4  9
D59V14, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(60) Variable = PCK1 MUTATION ANALYSIS
D60V1, survival
                sevent
clus2             0  1
  PCK1 MUTATED    3  5
  PCK1 WILD-TYPE 96 45
  PCK1 MUTATED PCK1 WILD-TYPE 
             8            141 
  PCK1 MUTATED PCK1 WILD-TYPE 
             5             45 
$`PCK1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-38-4632 TCGA-44-2655 TCGA-50-5049 TCGA-64-1677 
        3.98         9.96        44.61        18.87        48.82        20.65 
TCGA-64-5775 TCGA-67-3771 
        0.10         1.97 

$`PCK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        56.81        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  PCK1 MUTATED PCK1 WILD-TYPE 
          0.10           0.07 
  PCK1 MUTATED PCK1 WILD-TYPE 
         48.82          85.32 
  PCK1 MUTATED PCK1 WILD-TYPE 
        14.415         13.870 
[1] "0.1 - 48.8 (14.4)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
[1] "hr=" "2.2"
D60V2, continuous
D60V3, binary
                cls
clus              0  1
  PCK1 MUTATED    5  5
  PCK1 WILD-TYPE 88 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      5    5
  PCK1 WILD-TYPE   88   74
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D60V4, continuous
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PCK1 MUTATED                            0                                 3
  PCK1 WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PCK1 MUTATED                                                    7
  PCK1 WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PCK1 MUTATED                                            0
  PCK1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PCK1 MUTATED                                0
  PCK1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                                    0
  PCK1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                              0                             0
  PCK1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  PCK1 MUTATED                                   0
  PCK1 WILD-TYPE                                 2
D60V5, multiclass
                vv
clus              T1  T2  T3  T4
  PCK1 MUTATED     2   5   1   2
  PCK1 WILD-TYPE  39 103  13   6
D60V6, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  T1            2             39
  T2            5            103
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  PCK1 MUTATED    6  3     1
  PCK1 WILD-TYPE 89 34    34
D60V7, multiclass
       clus
vv      PCK1 MUTATED PCK1 WILD-TYPE
  N0               6             89
  N1               3             34
  N2+N3            1             34
                vv
clus              M0  M1  MX
  PCK1 MUTATED     8   2   0
  PCK1 WILD-TYPE 129   7  22
D60V8, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  M0            8            129
  M1            2              7
  MX            0             22
                vv
clus              I II III IV
  PCK1 MUTATED    4  0   4  2
  PCK1 WILD-TYPE 84 33  35  7
D60V9, multiclass
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  I              4             84
  II             0             33
  III            4             35
  IV             2              7
D60V10, binary
                cls
clus               0   1
  PCK1 MUTATED     1   9
  PCK1 WILD-TYPE  15 147
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      1    9
  PCK1 WILD-TYPE   15  147
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  NO             1             15
  YES            9            147
D60V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PCK1 MUTATED                                             4
  PCK1 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PCK1 MUTATED                                        3              2
  PCK1 WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  PCK1 MUTATED                     0
  PCK1 WILD-TYPE                  24
D60V12, multiclass
                                             clus
vv                                            PCK1 MUTATED PCK1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D60V13, continuous
                vv
clus             R0 R1 R2 RX
  PCK1 MUTATED    6  1  1  1
  PCK1 WILD-TYPE 96  4  3  9
D60V14, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  R0            6             96
  R1            1              4
  R2            1              3
  RX            1              9

Clustering(61) Variable = CXORF59 MUTATION ANALYSIS
D61V1, survival
                   sevent
clus2                0  1
  CXORF59 MUTATED    6  0
  CXORF59 WILD-TYPE 93 50
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                6               143 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                0                50 
$`CXORF59 MUTATED`
TCGA-05-4382 TCGA-05-4430 TCGA-05-5420 TCGA-35-5375 TCGA-49-6744 TCGA-55-1595 
       19.92        25.02         1.02         8.68        12.99        48.62 

$`CXORF59 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CXORF59 MUTATED CXORF59 WILD-TYPE 
             1.02              0.07 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
            48.62             85.32 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
           16.455            13.870 
[1] "1.0 - 48.6 (16.5)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D61V2, continuous
D61V3, binary
                   cls
clus                 0  1
  CXORF59 MUTATED    5  3
  CXORF59 WILD-TYPE 88 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      5    3
  CXORF59 WILD-TYPE   88   76
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D61V4, continuous
[1] "Remove cluster labels:" "CXORF59 MUTATED"       
clus
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  CXORF59 MUTATED                            0
  CXORF59 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  CXORF59 MUTATED                                   3
  CXORF59 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CXORF59 MUTATED                                                    3
  CXORF59 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CXORF59 MUTATED                                            0
  CXORF59 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CXORF59 MUTATED                                               0
  CXORF59 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  CXORF59 MUTATED                                1
  CXORF59 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  CXORF59 MUTATED                                    0
  CXORF59 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CXORF59 MUTATED                              0                             1
  CXORF59 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CXORF59 MUTATED                                               0
  CXORF59 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  CXORF59 MUTATED                                   0
  CXORF59 WILD-TYPE                                 2
D61V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  CXORF59 MUTATED     1   6   1   0
  CXORF59 WILD-TYPE  40 102  13   8
D61V6, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  T1               1                40
  T2               6               102
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  CXORF59 MUTATED    4  1     3
  CXORF59 WILD-TYPE 91 36    32
D61V7, multiclass
       clus
vv      CXORF59 MUTATED CXORF59 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               3                32
                   vv
clus                 M0  M1  MX
  CXORF59 MUTATED     7   0   1
  CXORF59 WILD-TYPE 130   9  21
D61V8, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  CXORF59 MUTATED    4  1   3  0
  CXORF59 WILD-TYPE 84 32  36  9
D61V9, multiclass
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  I                 4                84
  II                1                32
  III               3                36
  IV                0                 9
D61V10, binary
                   cls
clus                  0   1
  CXORF59 MUTATED     0   8
  CXORF59 WILD-TYPE  16 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      0    8
  CXORF59 WILD-TYPE   16  148
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  NO                0                16
  YES               8               148
D61V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CXORF59 MUTATED                                             7
  CXORF59 WILD-TYPE                                          55
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CXORF59 MUTATED                                        0              1
  CXORF59 WILD-TYPE                                     46             27
                   vv
clus                LIFELONG NON-SMOKER
  CXORF59 MUTATED                     0
  CXORF59 WILD-TYPE                  24
D61V12, multiclass
                                             clus
vv                                            CXORF59 MUTATED CXORF59 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D61V13, continuous
                   vv
clus                R0 R1 R2 RX
  CXORF59 MUTATED    5  0  1  1
  CXORF59 WILD-TYPE 97  5  3  9
D61V14, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  R0               5                97
  R1               0                 5
  R2               1                 3
  RX               1                 9

Clustering(62) Variable = ZIC4 MUTATION ANALYSIS
D62V1, survival
                sevent
clus2             0  1
  ZIC4 MUTATED    4  6
  ZIC4 WILD-TYPE 95 44
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            10            139 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
             6             44 
$`ZIC4 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4632 TCGA-44-5643 TCGA-49-4486 TCGA-49-6743 
        9.96        29.95        44.61         3.48        76.21        12.13 
TCGA-50-5931 TCGA-55-1592 TCGA-64-5775 TCGA-64-5815 
        8.78        23.05         0.10         7.33 

$`ZIC4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZIC4 MUTATED ZIC4 WILD-TYPE 
          0.10           0.07 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
         76.21          85.32 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
        11.045         14.010 
[1] "0.1 - 76.2 (11.0)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
[1] "hr=" "1.7"
D62V2, continuous
D62V3, binary
                cls
clus              0  1
  ZIC4 MUTATED    3 10
  ZIC4 WILD-TYPE 90 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      3   10
  ZIC4 WILD-TYPE   90   69
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  FEMALE            3             90
  MALE             10             69
D62V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZIC4 MUTATED                            0                                 4
  ZIC4 WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZIC4 MUTATED                                                    8
  ZIC4 WILD-TYPE                                                106
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZIC4 MUTATED                                            0
  ZIC4 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZIC4 MUTATED                                               0
  ZIC4 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  ZIC4 MUTATED                                1
  ZIC4 WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  ZIC4 MUTATED                                    0
  ZIC4 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZIC4 MUTATED                              0                             0
  ZIC4 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZIC4 MUTATED                                               0
  ZIC4 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  ZIC4 MUTATED                                   0
  ZIC4 WILD-TYPE                                 2
D62V5, multiclass
                vv
clus              T1  T2  T3  T4
  ZIC4 MUTATED     2   8   1   2
  ZIC4 WILD-TYPE  39 100  13   6
D62V6, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  T1            2             39
  T2            8            100
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  ZIC4 MUTATED    7  3     3
  ZIC4 WILD-TYPE 88 34    32
D62V7, multiclass
       clus
vv      ZIC4 MUTATED ZIC4 WILD-TYPE
  N0               7             88
  N1               3             34
  N2+N3            3             32
                vv
clus              M0  M1  MX
  ZIC4 MUTATED     9   2   2
  ZIC4 WILD-TYPE 128   7  20
D62V8, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  M0            9            128
  M1            2              7
  MX            2             20
                vv
clus              I II III IV
  ZIC4 MUTATED    5  2   4  2
  ZIC4 WILD-TYPE 83 31  35  7
D62V9, multiclass
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  I              5             83
  II             2             31
  III            4             35
  IV             2              7
D62V10, binary
                cls
clus               0   1
  ZIC4 MUTATED     1  12
  ZIC4 WILD-TYPE  15 144
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      1   12
  ZIC4 WILD-TYPE   15  144
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  NO             1             15
  YES           12            144
D62V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZIC4 MUTATED                                             5
  ZIC4 WILD-TYPE                                          57
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZIC4 MUTATED                                        3              4
  ZIC4 WILD-TYPE                                     43             24
                vv
clus             LIFELONG NON-SMOKER
  ZIC4 MUTATED                     0
  ZIC4 WILD-TYPE                  24
D62V12, multiclass
                                             clus
vv                                            ZIC4 MUTATED ZIC4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D62V13, continuous
                vv
clus             R0 R1 R2 RX
  ZIC4 MUTATED    8  0  0  2
  ZIC4 WILD-TYPE 94  5  4  8
D62V14, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  R0            8             94
  R1            0              5
  R2            0              4
  RX            2              8

Clustering(63) Variable = OR52E4 MUTATION ANALYSIS
D63V1, survival
                  sevent
clus2               0  1
  OR52E4 MUTATED    3  1
  OR52E4 WILD-TYPE 96 49
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               4              145 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               1               49 
$`OR52E4 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-55-5899 TCGA-64-1678 
       19.92        24.03         2.86        39.09 

$`OR52E4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR52E4 MUTATED OR52E4 WILD-TYPE 
            2.86             0.07 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
           39.09            85.32 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
          21.975           13.150 
[1] "2.9 - 39.1 (22.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
[1] "hr=" "1.3"
D63V2, continuous
D63V3, binary
                  cls
clus                0  1
  OR52E4 MUTATED    1  5
  OR52E4 WILD-TYPE 92 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      1    5
  OR52E4 WILD-TYPE   92   74
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D63V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR52E4 MUTATED                            0                                 3
  OR52E4 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR52E4 MUTATED                                                    3
  OR52E4 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR52E4 MUTATED                                            0
  OR52E4 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR52E4 MUTATED                                               0
  OR52E4 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR52E4 MUTATED                                0
  OR52E4 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR52E4 MUTATED                                    0
  OR52E4 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR52E4 MUTATED                              0                             0
  OR52E4 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR52E4 MUTATED                                               0
  OR52E4 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR52E4 MUTATED                                   0
  OR52E4 WILD-TYPE                                 2
D63V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR52E4 MUTATED     1   4   0   1
  OR52E4 WILD-TYPE  40 104  14   7
D63V6, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR52E4 MUTATED    3  2     1
  OR52E4 WILD-TYPE 92 35    34
D63V7, multiclass
       clus
vv      OR52E4 MUTATED OR52E4 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR52E4 MUTATED     6   0   0
  OR52E4 WILD-TYPE 131   9  22
D63V8, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR52E4 MUTATED    3  2   1  0
  OR52E4 WILD-TYPE 85 31  38  9
D63V9, multiclass
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  I                3               85
  II               2               31
  III              1               38
  IV               0                9
D63V10, binary
                  cls
clus                 0   1
  OR52E4 MUTATED     0   6
  OR52E4 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      0    6
  OR52E4 WILD-TYPE   16  150
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  NO               0               16
  YES              6              150
D63V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR52E4 MUTATED                                             1
  OR52E4 WILD-TYPE                                          61
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR52E4 MUTATED                                        2              2
  OR52E4 WILD-TYPE                                     44             26
                  vv
clus               LIFELONG NON-SMOKER
  OR52E4 MUTATED                     1
  OR52E4 WILD-TYPE                  23
D63V12, multiclass
                                             clus
vv                                            OR52E4 MUTATED OR52E4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1               23
D63V13, continuous
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  OR52E4 MUTATED    6  0  0  0
  OR52E4 WILD-TYPE 96  5  4 10
D63V14, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(64) Variable = LRRIQ1 MUTATION ANALYSIS
D64V1, survival
                  sevent
clus2               0  1
  LRRIQ1 MUTATED   13  6
  LRRIQ1 WILD-TYPE 86 44
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              19              130 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               6               44 
$`LRRIQ1 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-35-4123 TCGA-38-4626 TCGA-38-4628 
        9.96        24.03        14.93         5.95        85.32        49.02 
TCGA-38-4631 TCGA-44-3396 TCGA-44-3398 TCGA-44-6145 TCGA-49-6743 TCGA-50-5049 
       11.64        10.22         8.32         3.35        12.13        48.82 
TCGA-50-5066 TCGA-50-5939 TCGA-50-5941 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
        9.76        15.12         9.37        42.31        39.09        39.52 
TCGA-91-6836 
        0.36 

$`LRRIQ1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 
        7.36         8.68        47.61        37.71        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 
        3.39        15.78        13.15         3.19         8.09         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.78        35.87        77.88        21.47         8.45         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
            0.36             0.07 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           85.32            83.84 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           12.13            13.94 
[1] "0.4 - 85.3 (12.1)" "0.1 - 83.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
[1] "hr=" "1.4"
D64V2, continuous
D64V3, binary
                  cls
clus                0  1
  LRRIQ1 MUTATED   14  7
  LRRIQ1 WILD-TYPE 79 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED     14    7
  LRRIQ1 WILD-TYPE   79   72
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  FEMALE             14               79
  MALE                7               72
D64V4, continuous
[1] "Remove cluster labels:" "LRRIQ1 MUTATED"        
clus
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRRIQ1 MUTATED                            0                                 7
  LRRIQ1 WILD-TYPE                          2                                32
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRIQ1 MUTATED                                                   12
  LRRIQ1 WILD-TYPE                                                102
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRRIQ1 MUTATED                                            0
  LRRIQ1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRRIQ1 MUTATED                                               0
  LRRIQ1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  LRRIQ1 MUTATED                                1
  LRRIQ1 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  LRRIQ1 MUTATED                                    0
  LRRIQ1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRRIQ1 MUTATED                              0                             1
  LRRIQ1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRRIQ1 MUTATED                                               0
  LRRIQ1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  LRRIQ1 MUTATED                                   0
  LRRIQ1 WILD-TYPE                                 2
D64V5, multiclass
                  vv
clus               T1 T2 T3 T4
  LRRIQ1 MUTATED    4 15  1  1
  LRRIQ1 WILD-TYPE 37 93 13  7
D64V6, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  T1              4               37
  T2             15               93
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  LRRIQ1 MUTATED   14  3     4
  LRRIQ1 WILD-TYPE 81 34    31
D64V7, multiclass
       clus
vv      LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  N0                14               81
  N1                 3               34
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  LRRIQ1 MUTATED    19   0   2
  LRRIQ1 WILD-TYPE 118   9  20
D64V8, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  M0             19              118
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  LRRIQ1 MUTATED   12  4   5  0
  LRRIQ1 WILD-TYPE 76 29  34  9
D64V9, multiclass
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  I               12               76
  II               4               29
  III              5               34
  IV               0                9
D64V10, binary
                  cls
clus                 0   1
  LRRIQ1 MUTATED     1  20
  LRRIQ1 WILD-TYPE  15 136
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED      1   20
  LRRIQ1 WILD-TYPE   15  136
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  NO               1               15
  YES             20              136
D64V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRIQ1 MUTATED                                            10
  LRRIQ1 WILD-TYPE                                          52
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRIQ1 MUTATED                                        3              5
  LRRIQ1 WILD-TYPE                                     43             23
                  vv
clus               LIFELONG NON-SMOKER
  LRRIQ1 MUTATED                     2
  LRRIQ1 WILD-TYPE                  22
D64V12, multiclass
                                             clus
vv                                            LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           5               23
  LIFELONG NON-SMOKER                                      2               22
D64V13, continuous
                  vv
clus               R0 R1 R2 RX
  LRRIQ1 MUTATED   12  0  1  1
  LRRIQ1 WILD-TYPE 90  5  3  9
D64V14, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  R0             12               90
  R1              0                5
  R2              1                3
  RX              1                9

Clustering(65) Variable = ASTN2 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    7  6
  ASTN2 WILD-TYPE 92 44
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             13             136 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              6              44 
$`ASTN2 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-38-4625 TCGA-38-4631 
       38.07         9.96        24.03        26.01        47.61        11.64 
TCGA-49-4487 TCGA-50-6593 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-73-4670 
       28.11        11.05        30.44        16.67        39.52         0.46 
TCGA-91-6829 
       41.33 

$`ASTN2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           0.46            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          47.61           85.32 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          26.01           13.07 
[1] "0.5 - 47.6 (26.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
                 cls
clus               0  1
  ASTN2 MUTATED    8  6
  ASTN2 WILD-TYPE 85 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      8    6
  ASTN2 WILD-TYPE   85   73
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             8              85
  MALE               6              73
D65V4, continuous
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ASTN2 MUTATED                            1                                 6
  ASTN2 WILD-TYPE                          1                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASTN2 MUTATED                                                    5
  ASTN2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ASTN2 MUTATED                                            0
  ASTN2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ASTN2 MUTATED                                               2
  ASTN2 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ASTN2 MUTATED                                0
  ASTN2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                                    0
  ASTN2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                              0                             0
  ASTN2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ASTN2 MUTATED                                               0
  ASTN2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  ASTN2 MUTATED                                   0
  ASTN2 WILD-TYPE                                 2
D65V5, multiclass
                 vv
clus              T1 T2 T3 T4
  ASTN2 MUTATED    2 11  0  1
  ASTN2 WILD-TYPE 39 97 14  7
D65V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             2              39
  T2            11              97
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ASTN2 MUTATED    9  3     2
  ASTN2 WILD-TYPE 86 34    33
D65V7, multiclass
       clus
vv      ASTN2 MUTATED ASTN2 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  ASTN2 MUTATED    11   2   1
  ASTN2 WILD-TYPE 126   7  21
D65V8, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            11             126
  M1             2               7
  MX             1              21
                 vv
clus               I II III IV
  ASTN2 MUTATED    7  2   3  2
  ASTN2 WILD-TYPE 81 31  36  7
D65V9, multiclass
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  I               7              81
  II              2              31
  III             3              36
  IV              2               7
D65V10, binary
                 cls
clus                0   1
  ASTN2 MUTATED     0  14
  ASTN2 WILD-TYPE  16 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      0   14
  ASTN2 WILD-TYPE   16  142
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              0              16
  YES            14             142
D65V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ASTN2 MUTATED                                             9
  ASTN2 WILD-TYPE                                          53
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ASTN2 MUTATED                                        3              2
  ASTN2 WILD-TYPE                                     43             26
                 vv
clus              LIFELONG NON-SMOKER
  ASTN2 MUTATED                     0
  ASTN2 WILD-TYPE                  24
D65V12, multiclass
                                             clus
vv                                            ASTN2 MUTATED ASTN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D65V13, continuous
                 vv
clus              R0 R1 R2 RX
  ASTN2 MUTATED   11  1  0  0
  ASTN2 WILD-TYPE 91  4  4 10
D65V14, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  R0            11              91
  R1             1               4
  R2             0               4
  RX             0              10

Clustering(66) Variable = FAM71B MUTATION ANALYSIS
D66V1, survival
                  sevent
clus2               0  1
  FAM71B MUTATED    9  5
  FAM71B WILD-TYPE 90 45
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              135 
  FAM71B MUTATED FAM71B WILD-TYPE 
               5               45 
$`FAM71B MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-35-3615 TCGA-38-4625 TCGA-44-6776 TCGA-49-4501 
       37.02         9.96         0.46        47.61        63.72        46.72 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6745 TCGA-50-6593 TCGA-55-1595 TCGA-64-5775 
       29.46        43.20         4.93        11.05        48.62         0.10 
TCGA-64-5815 TCGA-91-6836 
        7.33         0.36 

$`FAM71B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81        29.75        15.02        12.13 
TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       12.26        11.47        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84        30.44        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  FAM71B MUTATED FAM71B WILD-TYPE 
            0.10             0.07 
  FAM71B MUTATED FAM71B WILD-TYPE 
           63.72            85.32 
  FAM71B MUTATED FAM71B WILD-TYPE 
          20.255           13.870 
[1] "0.1 - 63.7 (20.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
[1] "hr=" "1.3"
D66V2, continuous
D66V3, binary
                  cls
clus                0  1
  FAM71B MUTATED    9  5
  FAM71B WILD-TYPE 84 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      9    5
  FAM71B WILD-TYPE   84   74
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D66V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM71B MUTATED                            0                                 4
  FAM71B WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM71B MUTATED                                                    7
  FAM71B WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM71B MUTATED                                            0
  FAM71B WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM71B MUTATED                                               0
  FAM71B WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FAM71B MUTATED                                1
  FAM71B WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM71B MUTATED                                    0
  FAM71B WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM71B MUTATED                              0                             2
  FAM71B WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM71B MUTATED                                               0
  FAM71B WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  FAM71B MUTATED                                   0
  FAM71B WILD-TYPE                                 2
D66V5, multiclass
                  vv
clus                T1  T2  T3  T4
  FAM71B MUTATED     4   8   0   2
  FAM71B WILD-TYPE  37 100  14   6
D66V6, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  T1              4               37
  T2              8              100
  T3              0               14
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  FAM71B MUTATED    9  3     2
  FAM71B WILD-TYPE 86 34    33
D66V7, multiclass
       clus
vv      FAM71B MUTATED FAM71B WILD-TYPE
  N0                 9               86
  N1                 3               34
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  FAM71B MUTATED    11   0   3
  FAM71B WILD-TYPE 126   9  19
D66V8, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  M0             11              126
  M1              0                9
  MX              3               19
                  vv
clus                I II III IV
  FAM71B MUTATED    8  2   4  0
  FAM71B WILD-TYPE 80 31  35  9
D66V9, multiclass
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  I                8               80
  II               2               31
  III              4               35
  IV               0                9
D66V10, binary
                  cls
clus                 0   1
  FAM71B MUTATED     0  14
  FAM71B WILD-TYPE  16 142
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      0   14
  FAM71B WILD-TYPE   16  142
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  NO               0               16
  YES             14              142
D66V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM71B MUTATED                                             5
  FAM71B WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM71B MUTATED                                        3              4
  FAM71B WILD-TYPE                                     43             24
                  vv
clus               LIFELONG NON-SMOKER
  FAM71B MUTATED                     2
  FAM71B WILD-TYPE                  22
D66V12, multiclass
                                             clus
vv                                            FAM71B MUTATED FAM71B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      2               22
D66V13, continuous
                  vv
clus               R0 R1 R2 RX
  FAM71B MUTATED    8  0  0  1
  FAM71B WILD-TYPE 94  5  4  9
D66V14, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  R0              8               94
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(67) Variable = EPHB1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  EPHB1 MUTATED   13  4
  EPHB1 WILD-TYPE 86 46
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             17             132 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              4              46 
$`EPHB1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96        47.05        29.95        30.02        26.01 
TCGA-38-4625 TCGA-44-3918 TCGA-44-6777 TCGA-49-6743 TCGA-50-5049 TCGA-50-5072 
       47.61         6.44        32.45        12.13        48.82         8.05 
TCGA-55-5899 TCGA-67-3771 TCGA-73-4658 TCGA-73-4668 TCGA-73-4677 
        2.86         1.97        52.57        15.35         1.25 

$`EPHB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96        14.93         8.98        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  EPHB1 MUTATED EPHB1 WILD-TYPE 
           1.25            0.07 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          52.57           85.32 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          19.92           13.15 
[1] "1.2 - 52.6 (19.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
[1] "hr=" "1.8"
D67V2, continuous
D67V3, binary
                 cls
clus               0  1
  EPHB1 MUTATED    9  9
  EPHB1 WILD-TYPE 84 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      9    9
  EPHB1 WILD-TYPE   84   70
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  FEMALE             9              84
  MALE               9              70
D67V4, continuous
[1] "Remove cluster labels:" "EPHB1 MUTATED"         
clus
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHB1 MUTATED                            0                                 7
  EPHB1 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHB1 MUTATED                                                    9
  EPHB1 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHB1 MUTATED                                            0
  EPHB1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHB1 MUTATED                                               0
  EPHB1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHB1 MUTATED                                1
  EPHB1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHB1 MUTATED                                    1
  EPHB1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHB1 MUTATED                              0                             0
  EPHB1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHB1 MUTATED                                               0
  EPHB1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  EPHB1 MUTATED                                   0
  EPHB1 WILD-TYPE                                 2
D67V5, multiclass
                 vv
clus              T1 T2 T3 T4
  EPHB1 MUTATED    4 11  1  2
  EPHB1 WILD-TYPE 37 97 13  6
D67V6, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  T1             4              37
  T2            11              97
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  EPHB1 MUTATED   10  4     3
  EPHB1 WILD-TYPE 85 33    32
D67V7, multiclass
       clus
vv      EPHB1 MUTATED EPHB1 WILD-TYPE
  N0               10              85
  N1                4              33
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  EPHB1 MUTATED    16   0   2
  EPHB1 WILD-TYPE 121   9  20
D67V8, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  M0            16             121
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  EPHB1 MUTATED   11  3   4  0
  EPHB1 WILD-TYPE 77 30  35  9
D67V9, multiclass
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  I              11              77
  II              3              30
  III             4              35
  IV              0               9
D67V10, binary
                 cls
clus                0   1
  EPHB1 MUTATED     3  15
  EPHB1 WILD-TYPE  13 141
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      3   15
  EPHB1 WILD-TYPE   13  141
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  NO              3              13
  YES            15             141
D67V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EPHB1 MUTATED                                             8
  EPHB1 WILD-TYPE                                          54
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EPHB1 MUTATED                                        5              4
  EPHB1 WILD-TYPE                                     41             24
                 vv
clus              LIFELONG NON-SMOKER
  EPHB1 MUTATED                     0
  EPHB1 WILD-TYPE                  24
D67V12, multiclass
                                             clus
vv                                            EPHB1 MUTATED EPHB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D67V13, continuous
                 vv
clus              R0 R1 R2 RX
  EPHB1 MUTATED   12  1  0  1
  EPHB1 WILD-TYPE 90  4  4  9
D67V14, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  R0            12              90
  R1             1               4
  R2             0               4
  RX             1               9

Clustering(68) Variable = OR8H3 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    4  4
  OR8H3 WILD-TYPE 95 46
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              8             141 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              4              46 
$`OR8H3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4432 TCGA-38-4629 TCGA-44-3918 TCGA-50-5933 
        9.96        47.05        25.02        28.37         6.44        77.88 
TCGA-50-5939 TCGA-64-5781 
       15.12        39.52 

$`OR8H3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           6.44            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          77.88           85.32 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
         26.695          13.150 
[1] "6.4 - 77.9 (26.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
                 cls
clus               0  1
  OR8H3 MUTATED    4  7
  OR8H3 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      4    7
  OR8H3 WILD-TYPE   89   72
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D68V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR8H3 MUTATED                            0                                 7
  OR8H3 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8H3 MUTATED                                                    3
  OR8H3 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR8H3 MUTATED                                            0
  OR8H3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR8H3 MUTATED                                               0
  OR8H3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR8H3 MUTATED                                0
  OR8H3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR8H3 MUTATED                                    0
  OR8H3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR8H3 MUTATED                              0                             1
  OR8H3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR8H3 MUTATED                                               0
  OR8H3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR8H3 MUTATED                                   0
  OR8H3 WILD-TYPE                                 2
D68V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR8H3 MUTATED     2   4   2   3
  OR8H3 WILD-TYPE  39 104  12   5
D68V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  OR8H3 MUTATED    5  3     3
  OR8H3 WILD-TYPE 90 34    32
D68V7, multiclass
       clus
vv      OR8H3 MUTATED OR8H3 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  OR8H3 MUTATED    11   0   0
  OR8H3 WILD-TYPE 126   9  22
D68V8, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  OR8H3 MUTATED    4  3   4  0
  OR8H3 WILD-TYPE 84 30  35  9
D68V9, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               4              84
  II              3              30
  III             4              35
  IV              0               9
D68V10, binary
                 cls
clus                0   1
  OR8H3 MUTATED     1  10
  OR8H3 WILD-TYPE  15 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      1   10
  OR8H3 WILD-TYPE   15  146
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  NO              1              15
  YES            10             146
D68V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8H3 MUTATED                                             4
  OR8H3 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8H3 MUTATED                                        4              2
  OR8H3 WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  OR8H3 MUTATED                     0
  OR8H3 WILD-TYPE                  24
D68V12, multiclass
                                             clus
vv                                            OR8H3 MUTATED OR8H3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D68V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR8H3 MUTATED    7  0  1  1
  OR8H3 WILD-TYPE 95  5  3  9
D68V14, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  R0             7              95
  R1             0               5
  R2             1               3
  RX             1               9

Clustering(69) Variable = RPL10L MUTATION ANALYSIS
D69V1, survival
                  sevent
clus2               0  1
  RPL10L MUTATED    3  2
  RPL10L WILD-TYPE 96 48
  RPL10L MUTATED RPL10L WILD-TYPE 
               5              144 
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               48 
$`RPL10L MUTATED`
TCGA-05-4427 TCGA-38-4631 TCGA-50-5045 TCGA-64-5778 TCGA-73-4668 
       26.01        11.64        71.47        30.44        15.35 

$`RPL10L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  RPL10L MUTATED RPL10L WILD-TYPE 
           11.64             0.07 
  RPL10L MUTATED RPL10L WILD-TYPE 
           71.47            85.32 
  RPL10L MUTATED RPL10L WILD-TYPE 
           26.01            13.15 
[1] "11.6 - 71.5 (26.0)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
                  cls
clus                0  1
  RPL10L MUTATED    4  2
  RPL10L WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      4    2
  RPL10L WILD-TYPE   89   77
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D69V4, continuous
[1] "Remove cluster labels:" "RPL10L MUTATED"        
clus
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RPL10L MUTATED                            0                                 1
  RPL10L WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RPL10L MUTATED                                                    3
  RPL10L WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RPL10L MUTATED                                            0
  RPL10L WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RPL10L MUTATED                                               1
  RPL10L WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  RPL10L MUTATED                                0
  RPL10L WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  RPL10L MUTATED                                    1
  RPL10L WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RPL10L MUTATED                              0                             0
  RPL10L WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RPL10L MUTATED                                               0
  RPL10L WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  RPL10L MUTATED                                   0
  RPL10L WILD-TYPE                                 2
D69V5, multiclass
                  vv
clus                T1  T2  T3  T4
  RPL10L MUTATED     0   6   0   0
  RPL10L WILD-TYPE  41 102  14   8
D69V6, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  T1              0               41
  T2              6              102
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  RPL10L MUTATED    2  3     1
  RPL10L WILD-TYPE 93 34    34
D69V7, multiclass
       clus
vv      RPL10L MUTATED RPL10L WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  RPL10L MUTATED     5   1   0
  RPL10L WILD-TYPE 132   8  22
D69V8, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  M0              5              132
  M1              1                8
  MX              0               22
                  vv
clus                I II III IV
  RPL10L MUTATED    3  2   0  1
  RPL10L WILD-TYPE 85 31  39  8
D69V9, multiclass
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  I                3               85
  II               2               31
  III              0               39
  IV               1                8
D69V10, binary
                  cls
clus                 0   1
  RPL10L MUTATED     1   5
  RPL10L WILD-TYPE  15 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      1    5
  RPL10L WILD-TYPE   15  151
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  NO               1               15
  YES              5              151
D69V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RPL10L MUTATED                                             5
  RPL10L WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RPL10L MUTATED                                        0              0
  RPL10L WILD-TYPE                                     46             28
                  vv
clus               LIFELONG NON-SMOKER
  RPL10L MUTATED                     0
  RPL10L WILD-TYPE                  24
D69V12, multiclass
                                             clus
vv                                            RPL10L MUTATED RPL10L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D69V13, continuous
                  vv
clus               R0 R1 R2 RX
  RPL10L MUTATED    4  0  0  1
  RPL10L WILD-TYPE 98  5  4  9
D69V14, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  R0              4               98
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(70) Variable = OR4S2 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  OR4S2 MUTATED    4  1
  OR4S2 WILD-TYPE 95 49
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              5             144 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              1              49 
$`OR4S2 MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-49-4514 TCGA-64-5781 TCGA-67-3771 
        4.96        28.37        43.20        39.52         1.97 

$`OR4S2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       16.67         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR4S2 MUTATED OR4S2 WILD-TYPE 
           1.97            0.07 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          43.20           85.32 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          28.37           13.51 
[1] "2.0 - 43.2 (28.4)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
[1] "hr=" "2"  
D70V2, continuous
D70V3, binary
                 cls
clus               0  1
  OR4S2 MUTATED    3  3
  OR4S2 WILD-TYPE 90 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      3    3
  OR4S2 WILD-TYPE   90   76
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D70V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4S2 MUTATED                            0                                 2
  OR4S2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4S2 MUTATED                                                    3
  OR4S2 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4S2 MUTATED                                            0
  OR4S2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4S2 MUTATED                                               0
  OR4S2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR4S2 MUTATED                                0
  OR4S2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4S2 MUTATED                                    0
  OR4S2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4S2 MUTATED                              0                             1
  OR4S2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4S2 MUTATED                                               0
  OR4S2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4S2 MUTATED                                   0
  OR4S2 WILD-TYPE                                 2
D70V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR4S2 MUTATED     2   3   1   0
  OR4S2 WILD-TYPE  39 105  13   8
D70V6, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR4S2 MUTATED    4  1     1
  OR4S2 WILD-TYPE 91 36    34
D70V7, multiclass
       clus
vv      OR4S2 MUTATED OR4S2 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR4S2 MUTATED     5   1   0
  OR4S2 WILD-TYPE 132   8  22
D70V8, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  M0             5             132
  M1             1               8
  MX             0              22
                 vv
clus               I II III IV
  OR4S2 MUTATED    3  2   0  1
  OR4S2 WILD-TYPE 85 31  39  8
D70V9, multiclass
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  I               3              85
  II              2              31
  III             0              39
  IV              1               8
D70V10, binary
                 cls
clus                0   1
  OR4S2 MUTATED     0   6
  OR4S2 WILD-TYPE  16 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      0    6
  OR4S2 WILD-TYPE   16  150
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  NO              0              16
  YES             6             150
D70V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4S2 MUTATED                                             4
  OR4S2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4S2 MUTATED                                        2              0
  OR4S2 WILD-TYPE                                     44             28
                 vv
clus              LIFELONG NON-SMOKER
  OR4S2 MUTATED                     0
  OR4S2 WILD-TYPE                  24
D70V12, multiclass
                                             clus
vv                                            OR4S2 MUTATED OR4S2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D70V13, continuous
[1] "Remove cluster labels:" "OR4S2 MUTATED"         
clus
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5779      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  OR4S2 MUTATED    4  0  0  2
  OR4S2 WILD-TYPE 98  5  4  8
D70V14, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             0               4
  RX             2               8

Clustering(71) Variable = PJA1 MUTATION ANALYSIS
D71V1, survival
                sevent
clus2             0  1
  PJA1 MUTATED    5  1
  PJA1 WILD-TYPE 94 49
  PJA1 MUTATED PJA1 WILD-TYPE 
             6            143 
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             49 
$`PJA1 MUTATED`
TCGA-05-4390 TCGA-44-3398 TCGA-49-4514 TCGA-50-6592 TCGA-64-1676 TCGA-73-4668 
       37.02         8.32        43.20        25.51        56.81        15.35 

$`PJA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  PJA1 MUTATED PJA1 WILD-TYPE 
          8.32           0.07 
  PJA1 MUTATED PJA1 WILD-TYPE 
         56.81          85.32 
  PJA1 MUTATED PJA1 WILD-TYPE 
        31.265         13.150 
[1] "8.3 - 56.8 (31.3)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
[1] "hr=" "3.6"
D71V2, continuous
D71V3, binary
                cls
clus              0  1
  PJA1 MUTATED    5  3
  PJA1 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      5    3
  PJA1 WILD-TYPE   88   76
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D71V4, continuous
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4676     TCGA-75-5122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PJA1 MUTATED                            0                                 2
  PJA1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PJA1 MUTATED                                                    4
  PJA1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PJA1 MUTATED                                            0
  PJA1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PJA1 MUTATED                                0
  PJA1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                                    1
  PJA1 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                              0                             1
  PJA1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  PJA1 MUTATED                                   0
  PJA1 WILD-TYPE                                 2
D71V5, multiclass
                vv
clus              T1  T2  T3  T4
  PJA1 MUTATED     4   4   0   0
  PJA1 WILD-TYPE  37 104  14   8
D71V6, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  PJA1 MUTATED    6  1     1
  PJA1 WILD-TYPE 89 36    34
D71V7, multiclass
       clus
vv      PJA1 MUTATED PJA1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  PJA1 MUTATED     8   0   0
  PJA1 WILD-TYPE 129   9  22
D71V8, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  PJA1 MUTATED    6  1   1  0
  PJA1 WILD-TYPE 82 32  38  9
D71V9, multiclass
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  I              6             82
  II             1             32
  III            1             38
  IV             0              9
D71V10, binary
                cls
clus               0   1
  PJA1 MUTATED     0   8
  PJA1 WILD-TYPE  16 148
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      0    8
  PJA1 WILD-TYPE   16  148
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             0             16
  YES            8            148
D71V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PJA1 MUTATED                                             4
  PJA1 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PJA1 MUTATED                                        3              1
  PJA1 WILD-TYPE                                     43             27
                vv
clus             LIFELONG NON-SMOKER
  PJA1 MUTATED                     0
  PJA1 WILD-TYPE                  24
D71V12, multiclass
                                             clus
vv                                            PJA1 MUTATED PJA1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D71V13, continuous
                vv
clus             R0 R1 R2 RX
  PJA1 MUTATED    6  0  0  1
  PJA1 WILD-TYPE 96  5  4  9
D71V14, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  R0            6             96
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(72) Variable = INHBA MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    6  3
  INHBA WILD-TYPE 93 47
  INHBA MUTATED INHBA WILD-TYPE 
              9             140 
  INHBA MUTATED INHBA WILD-TYPE 
              3              47 
$`INHBA MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-44-3396 TCGA-44-6774 TCGA-50-5045 TCGA-50-5051 
       47.05         8.98        10.22         5.42        71.47        14.96 
TCGA-64-5778 TCGA-64-5781 TCGA-73-4677 
       30.44        39.52         1.25 

$`INHBA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       24.03         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  INHBA MUTATED INHBA WILD-TYPE 
           1.25            0.07 
  INHBA MUTATED INHBA WILD-TYPE 
          71.47           85.32 
  INHBA MUTATED INHBA WILD-TYPE 
          14.96           13.51 
[1] "1.2 - 71.5 (15.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
                 cls
clus               0  1
  INHBA MUTATED    6  3
  INHBA WILD-TYPE 87 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      6    3
  INHBA WILD-TYPE   87   76
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D72V4, continuous
[1] "Remove cluster labels:" "INHBA MUTATED"         
clus
  INHBA MUTATED INHBA WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  INHBA MUTATED                            0                                 3
  INHBA WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  INHBA MUTATED                                                    5
  INHBA WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  INHBA MUTATED                                            0
  INHBA WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  INHBA MUTATED                                               1
  INHBA WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  INHBA MUTATED                                0
  INHBA WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  INHBA MUTATED                                    0
  INHBA WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  INHBA MUTATED                              0                             0
  INHBA WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  INHBA MUTATED                                               0
  INHBA WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  INHBA MUTATED                                   0
  INHBA WILD-TYPE                                 2
D72V5, multiclass
                 vv
clus               T1  T2  T3  T4
  INHBA MUTATED     1   6   1   1
  INHBA WILD-TYPE  40 102  13   7
D72V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  INHBA MUTATED    3  1     5
  INHBA WILD-TYPE 92 36    30
D72V7, multiclass
       clus
vv      INHBA MUTATED INHBA WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  INHBA MUTATED     9   0   0
  INHBA WILD-TYPE 128   9  22
D72V8, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  INHBA MUTATED    4  0   5  0
  INHBA WILD-TYPE 84 33  34  9
D72V9, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D72V10, binary
                 cls
clus                0   1
  INHBA MUTATED     2   7
  INHBA WILD-TYPE  14 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    7
  INHBA WILD-TYPE   14  149
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  NO              2              14
  YES             7             149
D72V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  INHBA MUTATED                                             3
  INHBA WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  INHBA MUTATED                                        1              4
  INHBA WILD-TYPE                                     45             24
                 vv
clus              LIFELONG NON-SMOKER
  INHBA MUTATED                     0
  INHBA WILD-TYPE                  24
D72V12, multiclass
                                             clus
vv                                            INHBA MUTATED INHBA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D72V13, continuous
                 vv
clus              R0 R1 R2 RX
  INHBA MUTATED    6  0  0  0
  INHBA WILD-TYPE 96  5  4 10
D72V14, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  R0             6              96
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(73) Variable = RBM10 MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  RBM10 MUTATED    7  3
  RBM10 WILD-TYPE 92 47
  RBM10 MUTATED RBM10 WILD-TYPE 
             10             139 
  RBM10 MUTATED RBM10 WILD-TYPE 
              3              47 
$`RBM10 MUTATED`
TCGA-05-4418 TCGA-05-4424 TCGA-35-3615 TCGA-44-2655 TCGA-44-4112 TCGA-49-4494 
        8.98        30.02         0.46        18.87         4.60        35.54 
TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 TCGA-91-6828 
       56.81         0.10         0.99         1.22 

$`RBM10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  RBM10 MUTATED RBM10 WILD-TYPE 
           0.10            0.07 
  RBM10 MUTATED RBM10 WILD-TYPE 
          56.81           85.32 
  RBM10 MUTATED RBM10 WILD-TYPE 
           6.79           14.01 
[1] "0.1 - 56.8 (6.8)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
[1] "hr=" "1.1"
D73V2, continuous
D73V3, binary
                 cls
clus               0  1
  RBM10 MUTATED    3  9
  RBM10 WILD-TYPE 90 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      3    9
  RBM10 WILD-TYPE   90   70
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  FEMALE             3              90
  MALE               9              70
D73V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RBM10 MUTATED                            0                                 4
  RBM10 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RBM10 MUTATED                                                    8
  RBM10 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RBM10 MUTATED                                            0
  RBM10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RBM10 MUTATED                                0
  RBM10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                                    0
  RBM10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                              0                             0
  RBM10 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  RBM10 MUTATED                                   0
  RBM10 WILD-TYPE                                 2
D73V5, multiclass
                 vv
clus               T1  T2  T3  T4
  RBM10 MUTATED     4   3   3   2
  RBM10 WILD-TYPE  37 105  11   6
D73V6, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             3              11
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  RBM10 MUTATED    9  0     3
  RBM10 WILD-TYPE 86 37    32
D73V7, multiclass
       clus
vv      RBM10 MUTATED RBM10 WILD-TYPE
  N0                9              86
  N1                0              37
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  RBM10 MUTATED    11   0   1
  RBM10 WILD-TYPE 126   9  21
D73V8, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  RBM10 MUTATED    7  1   4  0
  RBM10 WILD-TYPE 81 32  35  9
D73V9, multiclass
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D73V10, binary
                 cls
clus                0   1
  RBM10 MUTATED     0  12
  RBM10 WILD-TYPE  16 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      0   12
  RBM10 WILD-TYPE   16  144
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              0              16
  YES            12             144
D73V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RBM10 MUTATED                                             1
  RBM10 WILD-TYPE                                          61
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RBM10 MUTATED                                        6              3
  RBM10 WILD-TYPE                                     40             25
                 vv
clus              LIFELONG NON-SMOKER
  RBM10 MUTATED                     2
  RBM10 WILD-TYPE                  22
D73V12, multiclass
                                             clus
vv                                            RBM10 MUTATED RBM10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     2              22
D73V13, continuous
                 vv
clus              R0 R1 R2 RX
  RBM10 MUTATED   10  1  0  0
  RBM10 WILD-TYPE 92  4  4 10
D73V14, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  R0            10              92
  R1             1               4
  R2             0               4
  RX             0              10

Clustering(74) Variable = MARCH11 MUTATION ANALYSIS
D74V1, survival
                   sevent
clus2                0  1
  MARCH11 MUTATED    4  3
  MARCH11 WILD-TYPE 95 47
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               142 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                3                47 
$`MARCH11 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-44-6778 TCGA-55-1595 TCGA-64-5775 
        9.96        24.03        47.05        36.49        48.62         0.10 
TCGA-64-5781 
       39.52 

$`MARCH11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4402 
       38.07         3.98        19.92        14.01        37.02         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MARCH11 MUTATED MARCH11 WILD-TYPE 
             0.10              0.07 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            48.62             85.32 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            36.49             13.15 
[1] "0.1 - 48.6 (36.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
[1] "hr=" "1.2"
D74V2, continuous
D74V3, binary
                   cls
clus                 0  1
  MARCH11 MUTATED    4  4
  MARCH11 WILD-TYPE 89 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      4    4
  MARCH11 WILD-TYPE   89   75
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  FEMALE               4                89
  MALE                 4                75
D74V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  MARCH11 MUTATED                            0
  MARCH11 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  MARCH11 MUTATED                                   4
  MARCH11 WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MARCH11 MUTATED                                                    2
  MARCH11 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MARCH11 MUTATED                                            0
  MARCH11 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MARCH11 MUTATED                                               0
  MARCH11 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  MARCH11 MUTATED                                1
  MARCH11 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  MARCH11 MUTATED                                    0
  MARCH11 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MARCH11 MUTATED                              0                             1
  MARCH11 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MARCH11 MUTATED                                               0
  MARCH11 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  MARCH11 MUTATED                                   0
  MARCH11 WILD-TYPE                                 2
D74V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  MARCH11 MUTATED     2   2   1   3
  MARCH11 WILD-TYPE  39 106  13   5
D74V6, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  T1               2                39
  T2               2               106
  T3               1                13
  T4               3                 5
                   vv
clus                N0 N1 N2+N3
  MARCH11 MUTATED    4  2     2
  MARCH11 WILD-TYPE 91 35    33
D74V7, multiclass
       clus
vv      MARCH11 MUTATED MARCH11 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  MARCH11 MUTATED     7   0   1
  MARCH11 WILD-TYPE 130   9  21
D74V8, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  MARCH11 MUTATED    3  1   4  0
  MARCH11 WILD-TYPE 85 32  35  9
D74V9, multiclass
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  I                 3                85
  II                1                32
  III               4                35
  IV                0                 9
D74V10, binary
                   cls
clus                  0   1
  MARCH11 MUTATED     0   8
  MARCH11 WILD-TYPE  16 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      0    8
  MARCH11 WILD-TYPE   16  148
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  NO                0                16
  YES               8               148
D74V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MARCH11 MUTATED                                             4
  MARCH11 WILD-TYPE                                          58
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MARCH11 MUTATED                                        1              3
  MARCH11 WILD-TYPE                                     45             25
                   vv
clus                LIFELONG NON-SMOKER
  MARCH11 MUTATED                     0
  MARCH11 WILD-TYPE                  24
D74V12, multiclass
                                             clus
vv                                            MARCH11 MUTATED MARCH11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D74V13, continuous
                   vv
clus                R0 R1 R2 RX
  MARCH11 MUTATED    5  0  1  0
  MARCH11 WILD-TYPE 97  5  3 10
D74V14, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  R0               5                97
  R1               0                 5
  R2               1                 3
  RX               0                10

Clustering(75) Variable = OR14I1 MUTATION ANALYSIS
D75V1, survival
                  sevent
clus2               0  1
  OR14I1 MUTATED    5  1
  OR14I1 WILD-TYPE 94 49
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              143 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               49 
$`OR14I1 MUTATED`
TCGA-05-4382 TCGA-44-6778 TCGA-55-1595 TCGA-64-1676 TCGA-67-3770 TCGA-73-4659 
       19.92        36.49        48.62        56.81         0.99        23.38 

$`OR14I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.89         0.69        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR14I1 MUTATED OR14I1 WILD-TYPE 
            0.99             0.07 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
           56.81            85.32 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
          29.935           13.150 
[1] "1.0 - 56.8 (29.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
[1] "hr=" "3.6"
D75V2, continuous
D75V3, binary
                  cls
clus                0  1
  OR14I1 MUTATED    2  4
  OR14I1 WILD-TYPE 91 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      2    4
  OR14I1 WILD-TYPE   91   75
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D75V4, continuous
[1] "Remove cluster labels:" "OR14I1 MUTATED"        
clus
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR14I1 MUTATED                            0                                 1
  OR14I1 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR14I1 MUTATED                                                    4
  OR14I1 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR14I1 MUTATED                                            0
  OR14I1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR14I1 MUTATED                                               0
  OR14I1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR14I1 MUTATED                                1
  OR14I1 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR14I1 MUTATED                                    0
  OR14I1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR14I1 MUTATED                              0                             0
  OR14I1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR14I1 MUTATED                                               0
  OR14I1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR14I1 MUTATED                                   0
  OR14I1 WILD-TYPE                                 2
D75V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR14I1 MUTATED     4   2   0   0
  OR14I1 WILD-TYPE  37 106  14   8
D75V6, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  T1              4               37
  T2              2              106
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR14I1 MUTATED    5  0     1
  OR14I1 WILD-TYPE 90 37    34
D75V7, multiclass
       clus
vv      OR14I1 MUTATED OR14I1 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR14I1 MUTATED     5   0   1
  OR14I1 WILD-TYPE 132   9  21
D75V8, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR14I1 MUTATED    5  0   1  0
  OR14I1 WILD-TYPE 83 33  38  9
D75V9, multiclass
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D75V10, binary
                  cls
clus                 0   1
  OR14I1 MUTATED     0   6
  OR14I1 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      0    6
  OR14I1 WILD-TYPE   16  150
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  NO               0               16
  YES              6              150
D75V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR14I1 MUTATED                                             3
  OR14I1 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR14I1 MUTATED                                        2              1
  OR14I1 WILD-TYPE                                     44             27
                  vv
clus               LIFELONG NON-SMOKER
  OR14I1 MUTATED                     0
  OR14I1 WILD-TYPE                  24
D75V12, multiclass
                                             clus
vv                                            OR14I1 MUTATED OR14I1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D75V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR14I1 MUTATED    4  0  0  0
  OR14I1 WILD-TYPE 98  5  4 10
D75V14, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  R0              4               98
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(76) Variable = PTH MUTATION ANALYSIS
D76V1, survival
               sevent
clus2            0  1
  PTH MUTATED    1  2
  PTH WILD-TYPE 98 48
  PTH MUTATED PTH WILD-TYPE 
            3           146 
  PTH MUTATED PTH WILD-TYPE 
            2            48 
$`PTH MUTATED`
TCGA-05-4415 TCGA-44-2657 TCGA-49-4505 
        2.96        13.15        14.07 

$`PTH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        19.10        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PTH MUTATED PTH WILD-TYPE 
         2.96          0.07 
  PTH MUTATED PTH WILD-TYPE 
        14.07         85.32 
  PTH MUTATED PTH WILD-TYPE 
        13.15         13.94 
[1] "3.0 - 14.1 (13.2)" "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
[1] "hr=" "5.5"
D76V2, continuous
D76V3, binary
               cls
clus             0  1
  PTH MUTATED    2  1
  PTH WILD-TYPE 91 78
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      2    1
  PTH WILD-TYPE   91   78
        clus
vv       PTH MUTATED PTH WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D76V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PTH MUTATED                            0                                 1
  PTH WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTH MUTATED                                                    2
  PTH WILD-TYPE                                                112
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PTH MUTATED                                            0
  PTH WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  PTH MUTATED                                0
  PTH WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  PTH MUTATED                                    0                            0
  PTH WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  PTH MUTATED                               0
  PTH WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  PTH MUTATED                                   0
  PTH WILD-TYPE                                 2
D76V5, multiclass
               vv
clus             T1  T2  T3  T4
  PTH MUTATED     0   2   0   1
  PTH WILD-TYPE  41 106  14   7
D76V6, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  T1           0            41
  T2           2           106
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  PTH MUTATED    0  1     1
  PTH WILD-TYPE 95 36    34
D76V7, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           165 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4403    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1592    TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-1676    TCGA-64-1677 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3770    TCGA-67-3771 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3772    TCGA-67-3773    TCGA-67-3774    TCGA-67-4679    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6207    TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
               vv
clus             M0  M1  MX
  PTH MUTATED     3   0   0
  PTH WILD-TYPE 134   9  22
D76V8, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  M0           3           134
  M1           0             9
  MX           0            22
               vv
clus             I II III IV
  PTH MUTATED    1  1   1  0
  PTH WILD-TYPE 87 32  38  9
D76V9, multiclass
     clus
vv    PTH MUTATED PTH WILD-TYPE
  I             1            87
  II            1            32
  III           1            38
  IV            0             9
D76V10, binary
               cls
clus              0   1
  PTH MUTATED     0   3
  PTH WILD-TYPE  16 153
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   16  153
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            16
  YES           3           153
D76V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PTH MUTATED                                             3
  PTH WILD-TYPE                                          59
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PTH MUTATED                                        0              0
  PTH WILD-TYPE                                     46             28
               vv
clus            LIFELONG NON-SMOKER
  PTH MUTATED                     0
  PTH WILD-TYPE                  24
D76V12, multiclass
                                             clus
vv                                            PTH MUTATED PTH WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           3            59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0            46
  CURRENT SMOKER                                        0            28
  LIFELONG NON-SMOKER                                   0            24
D76V13, continuous
               vv
clus            R0 R1 R2 RX
  PTH MUTATED    3  0  0  0
  PTH WILD-TYPE 99  5  4 10
D76V14, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  R0           3            99
  R1           0             5
  R2           0             4
  RX           0            10

Clustering(77) Variable = FLI1 MUTATION ANALYSIS
D77V1, survival
                sevent
clus2             0  1
  FLI1 MUTATED    5  1
  FLI1 WILD-TYPE 94 49
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            143 
  FLI1 MUTATED FLI1 WILD-TYPE 
             1             49 
$`FLI1 MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-44-2661 TCGA-44-3398 TCGA-44-3918 TCGA-50-5045 
       29.95        30.02         3.39         8.32         6.44        71.47 

$`FLI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 
        5.19        18.87        19.10        13.15        17.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19         8.09        10.22         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FLI1 MUTATED FLI1 WILD-TYPE 
          3.39           0.07 
  FLI1 MUTATED FLI1 WILD-TYPE 
         71.47          85.32 
  FLI1 MUTATED FLI1 WILD-TYPE 
        19.135         13.870 
[1] "3.4 - 71.5 (19.1)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
[1] "hr=" "2.7"
D77V2, continuous
D77V3, binary
                cls
clus              0  1
  FLI1 MUTATED    4  2
  FLI1 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      4    2
  FLI1 WILD-TYPE   89   77
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D77V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FLI1 MUTATED                            0                                 2
  FLI1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FLI1 MUTATED                                                    4
  FLI1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FLI1 MUTATED                                            0
  FLI1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FLI1 MUTATED                                0
  FLI1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                                    0
  FLI1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                              0                             0
  FLI1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  FLI1 MUTATED                                   0
  FLI1 WILD-TYPE                                 2
D77V5, multiclass
                vv
clus              T1  T2  T3  T4
  FLI1 MUTATED     3   2   1   0
  FLI1 WILD-TYPE  38 106  13   8
D77V6, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  T1            3             38
  T2            2            106
  T3            1             13
  T4            0              8
                vv
clus             N0 N1 N2+N3
  FLI1 MUTATED    5  1     0
  FLI1 WILD-TYPE 90 36    35
D77V7, multiclass
       clus
vv      FLI1 MUTATED FLI1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  FLI1 MUTATED     6   0   0
  FLI1 WILD-TYPE 131   9  22
D77V8, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  FLI1 MUTATED    5  1   0  0
  FLI1 WILD-TYPE 83 32  39  9
D77V9, multiclass
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  I              5             83
  II             1             32
  III            0             39
  IV             0              9
D77V10, binary
                cls
clus               0   1
  FLI1 MUTATED     1   5
  FLI1 WILD-TYPE  15 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      1    5
  FLI1 WILD-TYPE   15  151
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             1             15
  YES            5            151
D77V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FLI1 MUTATED                                             2
  FLI1 WILD-TYPE                                          60
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FLI1 MUTATED                                        1              1
  FLI1 WILD-TYPE                                     45             27
                vv
clus             LIFELONG NON-SMOKER
  FLI1 MUTATED                     1
  FLI1 WILD-TYPE                  23
D77V12, multiclass
                                             clus
vv                                            FLI1 MUTATED FLI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1             23
D77V13, continuous
                vv
clus             R0 R1 R2 RX
  FLI1 MUTATED    4  1  0  0
  FLI1 WILD-TYPE 98  4  4 10
D77V14, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  R0            4             98
  R1            1              4
  R2            0              4
  RX            0             10

Clustering(78) Variable = GPR174 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  GPR174 MUTATED    4  2
  GPR174 WILD-TYPE 95 48
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              143 
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               48 
$`GPR174 MUTATED`
TCGA-05-4405 TCGA-38-4626 TCGA-49-6743 TCGA-50-5931 TCGA-50-6597 TCGA-91-6829 
       20.05        85.32        12.13         8.78        33.37        41.33 

$`GPR174 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  GPR174 MUTATED GPR174 WILD-TYPE 
            8.78             0.07 
  GPR174 MUTATED GPR174 WILD-TYPE 
           85.32            83.84 
  GPR174 MUTATED GPR174 WILD-TYPE 
           26.71            13.15 
[1] "8.8 - 85.3 (26.7)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
[1] "hr=" "2"  
D78V2, continuous
D78V3, binary
                  cls
clus                0  1
  GPR174 MUTATED    5  1
  GPR174 WILD-TYPE 88 78
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      5    1
  GPR174 WILD-TYPE   88   78
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D78V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR174 MUTATED                            0                                 1
  GPR174 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR174 MUTATED                                                    3
  GPR174 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR174 MUTATED                                            0
  GPR174 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR174 MUTATED                                               1
  GPR174 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR174 MUTATED                                1
  GPR174 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                                    0
  GPR174 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                              0                             0
  GPR174 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR174 MUTATED                                               0
  GPR174 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  GPR174 MUTATED                                   0
  GPR174 WILD-TYPE                                 2
D78V5, multiclass
                  vv
clus                T1  T2  T3  T4
  GPR174 MUTATED     1   5   0   0
  GPR174 WILD-TYPE  40 103  14   8
D78V6, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  GPR174 MUTATED    5  0     1
  GPR174 WILD-TYPE 90 37    34
D78V7, multiclass
       clus
vv      GPR174 MUTATED GPR174 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  GPR174 MUTATED     4   0   2
  GPR174 WILD-TYPE 133   9  20
D78V8, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  GPR174 MUTATED    4  1   1  0
  GPR174 WILD-TYPE 84 32  38  9
D78V9, multiclass
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  I                4               84
  II               1               32
  III              1               38
  IV               0                9
D78V10, binary
                  cls
clus                 0   1
  GPR174 MUTATED     0   6
  GPR174 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      0    6
  GPR174 WILD-TYPE   16  150
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               0               16
  YES              6              150
D78V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GPR174 MUTATED                                             3
  GPR174 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GPR174 MUTATED                                        0              1
  GPR174 WILD-TYPE                                     46             27
                  vv
clus               LIFELONG NON-SMOKER
  GPR174 MUTATED                     1
  GPR174 WILD-TYPE                  23
D78V12, multiclass
                                             clus
vv                                            GPR174 MUTATED GPR174 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D78V13, continuous
                  vv
clus                R0  R1  R2  RX
  GPR174 MUTATED     2   0   0   0
  GPR174 WILD-TYPE 100   5   4  10
D78V14, multiclass
[1] "Remove cluster labels:" "GPR174 MUTATED"        
clus
  GPR174 MUTATED GPR174 WILD-TYPE 
               2              119 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4422       TCGA-05-4424 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-3615       TCGA-35-4122       TCGA-35-4123 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4627       TCGA-38-4628 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4629       TCGA-38-4630       TCGA-38-4631       TCGA-38-4632 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-2655       TCGA-44-2657       TCGA-44-2659 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-6144       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6775       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4501       TCGA-49-4505       TCGA-49-4506 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4507       TCGA-49-4510       TCGA-49-4514       TCGA-49-6744 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5055       TCGA-50-5066       TCGA-55-1592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1596       TCGA-55-5899       TCGA-64-1676 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-64-5774 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5815       TCGA-67-3770       TCGA-67-3771       TCGA-67-3773 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-4679       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 

Clustering(79) Variable = KRTAP19-6 MUTATION ANALYSIS
D79V1, survival
                     sevent
clus2                  0  1
  KRTAP19-6 MUTATED    3  0
  KRTAP19-6 WILD-TYPE 96 50
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  3                 146 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  0                  50 
$`KRTAP19-6 MUTATED`
TCGA-44-2659 TCGA-64-1676 TCGA-64-5778 
       17.39        56.81        30.44 

$`KRTAP19-6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              17.39                0.07 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              56.81               85.32 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              30.44               13.15 
[1] "17.4 - 56.8 (30.4)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D79V2, continuous
D79V3, binary
                     cls
clus                   0  1
  KRTAP19-6 MUTATED    1  3
  KRTAP19-6 WILD-TYPE 92 76
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      1    3
  KRTAP19-6 WILD-TYPE   92   76
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  FEMALE                 1                  92
  MALE                   3                  76
D79V4, continuous
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  1                  11 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1677          TCGA-71-6725          TCGA-73-4659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  KRTAP19-6 MUTATED                            0
  KRTAP19-6 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP19-6 MUTATED                                   1
  KRTAP19-6 WILD-TYPE                                38
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP19-6 MUTATED                                                    2
  KRTAP19-6 WILD-TYPE                                                112
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP19-6 MUTATED                                            0
  KRTAP19-6 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP19-6 MUTATED                                               1
  KRTAP19-6 WILD-TYPE                                             1
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP19-6 MUTATED                                0
  KRTAP19-6 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP19-6 MUTATED                                    0
  KRTAP19-6 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  KRTAP19-6 MUTATED                              0
  KRTAP19-6 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  KRTAP19-6 MUTATED                               0
  KRTAP19-6 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP19-6 MUTATED                                               0
  KRTAP19-6 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) ADENOCARCINOMA
  KRTAP19-6 MUTATED                                   0
  KRTAP19-6 WILD-TYPE                                 2
D79V5, multiclass
                     vv
clus                   T1  T2  T3  T4
  KRTAP19-6 MUTATED     2   2   0   0
  KRTAP19-6 WILD-TYPE  39 106  14   8
D79V6, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 0                  14
  T4                 0                   8
                     vv
clus                  N0 N1 N2+N3
  KRTAP19-6 MUTATED    3  1     0
  KRTAP19-6 WILD-TYPE 92 36    35
D79V7, multiclass
       clus
vv      KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  N0                    3                  92
  N1                    1                  36
  N2+N3                 0                  35
                     vv
clus                   M0  M1  MX
  KRTAP19-6 MUTATED     4   0   0
  KRTAP19-6 WILD-TYPE 133   9  22
D79V8, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 0                  22
                     vv
clus                   I II III IV
  KRTAP19-6 MUTATED    3  1   0  0
  KRTAP19-6 WILD-TYPE 85 32  39  9
D79V9, multiclass
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 0                  39
  IV                  0                   9
D79V10, binary
                     cls
clus                    0   1
  KRTAP19-6 MUTATED     0   4
  KRTAP19-6 WILD-TYPE  16 152
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      0    4
  KRTAP19-6 WILD-TYPE   16  152
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  NO                  0                  16
  YES                 4                 152
D79V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRTAP19-6 MUTATED                                             3
  KRTAP19-6 WILD-TYPE                                          59
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRTAP19-6 MUTATED                                        0              1
  KRTAP19-6 WILD-TYPE                                     46             27
                     vv
clus                  LIFELONG NON-SMOKER
  KRTAP19-6 MUTATED                     0
  KRTAP19-6 WILD-TYPE                  24
D79V12, multiclass
                                             clus
vv                                            KRTAP19-6 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      0
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP19-6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       46
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                          24
D79V13, continuous
                     vv
clus                  R0 R1 R2 RX
  KRTAP19-6 MUTATED    3  0  0  1
  KRTAP19-6 WILD-TYPE 99  5  4  9
D79V14, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  R0                 3                  99
  R1                 0                   5
  R2                 0                   4
  RX                 1                   9

Clustering(80) Variable = MAGEB18 MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  MAGEB18 MUTATED    3  2
  MAGEB18 WILD-TYPE 96 48
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               144 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                2                48 
$`MAGEB18 MUTATED`
TCGA-44-2657 TCGA-44-3396 TCGA-44-6774 TCGA-44-6777 TCGA-50-6592 
       13.15        10.22         5.42        32.45        25.51 

$`MAGEB18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
             5.42              0.07 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            32.45             85.32 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            13.15             13.94 
[1] "5.4 - 32.5 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
[1] "hr=" "1.6"
D80V2, continuous
D80V3, binary
                   cls
clus                 0  1
  MAGEB18 MUTATED    5  0
  MAGEB18 WILD-TYPE 88 79
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      5    0
  MAGEB18 WILD-TYPE   88   79
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  FEMALE               5                88
  MALE                 0                79
D80V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  MAGEB18 MUTATED                            0
  MAGEB18 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  MAGEB18 MUTATED                                   0
  MAGEB18 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MAGEB18 MUTATED                                                    5
  MAGEB18 WILD-TYPE                                                109
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MAGEB18 MUTATED                                            0
  MAGEB18 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MAGEB18 MUTATED                                               0
  MAGEB18 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  MAGEB18 MUTATED                                0
  MAGEB18 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  MAGEB18 MUTATED                                    0
  MAGEB18 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MAGEB18 MUTATED                              0                             0
  MAGEB18 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MAGEB18 MUTATED                                               0
  MAGEB18 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  MAGEB18 MUTATED                                   0
  MAGEB18 WILD-TYPE                                 2
D80V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  MAGEB18 MUTATED     1   4   0   0
  MAGEB18 WILD-TYPE  40 104  14   8
D80V6, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  T1               1                40
  T2               4               104
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  MAGEB18 MUTATED    1  0     2
  MAGEB18 WILD-TYPE 94 37    33
D80V7, multiclass
       clus
vv      MAGEB18 MUTATED MAGEB18 WILD-TYPE
  N0                  1                94
  N1                  0                37
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  MAGEB18 MUTATED     4   0   1
  MAGEB18 WILD-TYPE 133   9  21
D80V8, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  MAGEB18 MUTATED    3  0   2  0
  MAGEB18 WILD-TYPE 85 33  37  9
D80V9, multiclass
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  I                 3                85
  II                0                33
  III               2                37
  IV                0                 9
D80V10, binary
                   cls
clus                  0   1
  MAGEB18 MUTATED     1   4
  MAGEB18 WILD-TYPE  15 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      1    4
  MAGEB18 WILD-TYPE   15  152
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  NO                1                15
  YES               4               152
D80V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MAGEB18 MUTATED                                             3
  MAGEB18 WILD-TYPE                                          59
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MAGEB18 MUTATED                                        0              2
  MAGEB18 WILD-TYPE                                     46             26
                   vv
clus                LIFELONG NON-SMOKER
  MAGEB18 MUTATED                     0
  MAGEB18 WILD-TYPE                  24
D80V12, multiclass
                                             clus
vv                                            MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D80V13, continuous
                   vv
clus                 R0  R1  R2  RX
  MAGEB18 MUTATED     2   0   0   0
  MAGEB18 WILD-TYPE 100   5   4  10
D80V14, multiclass
[1] "Remove cluster labels:" "MAGEB18 MUTATED"       
clus
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                2               119 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-6144        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6775        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4514        TCGA-49-6744 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5055        TCGA-50-5066        TCGA-55-1592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-55-5899        TCGA-64-1676 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1680        TCGA-64-5774 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3773 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-75-5122        TCGA-75-5125 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6211 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 

Clustering(81) Variable = NHEDC1 MUTATION ANALYSIS
D81V1, survival
                  sevent
clus2               0  1
  NHEDC1 MUTATED    6  2
  NHEDC1 WILD-TYPE 93 48
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               8              141 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               2               48 
$`NHEDC1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-38-4632 TCGA-44-3918 
       37.02         9.96        29.95        85.32        44.61         6.44 
TCGA-49-6742 TCGA-64-5781 
       15.02        39.52 

$`NHEDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
            6.44             0.07 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
           85.32            83.84 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          33.485           13.150 
[1] "6.4 - 85.3 (33.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
[1] "hr=" "2.8"
D81V2, continuous
D81V3, binary
                  cls
clus                0  1
  NHEDC1 MUTATED    4  5
  NHEDC1 WILD-TYPE 89 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      4    5
  NHEDC1 WILD-TYPE   89   74
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D81V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NHEDC1 MUTATED                            0                                 4
  NHEDC1 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NHEDC1 MUTATED                                                    3
  NHEDC1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NHEDC1 MUTATED                                            0
  NHEDC1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NHEDC1 MUTATED                                               0
  NHEDC1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  NHEDC1 MUTATED                                0
  NHEDC1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                                    0
  NHEDC1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                              0                             0
  NHEDC1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NHEDC1 MUTATED                                               1
  NHEDC1 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  NHEDC1 MUTATED                                   1
  NHEDC1 WILD-TYPE                                 1
D81V5, multiclass
                  vv
clus                T1  T2  T3  T4
  NHEDC1 MUTATED     1   7   0   1
  NHEDC1 WILD-TYPE  40 101  14   7
D81V6, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  NHEDC1 MUTATED    6  3     0
  NHEDC1 WILD-TYPE 89 34    35
D81V7, multiclass
       clus
vv      NHEDC1 MUTATED NHEDC1 WILD-TYPE
  N0                 6               89
  N1                 3               34
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  NHEDC1 MUTATED     7   1   1
  NHEDC1 WILD-TYPE 130   8  21
D81V8, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  NHEDC1 MUTATED    5  2   1  1
  NHEDC1 WILD-TYPE 83 31  38  8
D81V9, multiclass
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  I                5               83
  II               2               31
  III              1               38
  IV               1                8
D81V10, binary
                  cls
clus                 0   1
  NHEDC1 MUTATED     0   9
  NHEDC1 WILD-TYPE  16 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      0    9
  NHEDC1 WILD-TYPE   16  147
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               0               16
  YES              9              147
D81V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NHEDC1 MUTATED                                             4
  NHEDC1 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NHEDC1 MUTATED                                        3              2
  NHEDC1 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  NHEDC1 MUTATED                     0
  NHEDC1 WILD-TYPE                  24
D81V12, multiclass
                                             clus
vv                                            NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D81V13, continuous
                  vv
clus               R0 R1 R2 RX
  NHEDC1 MUTATED    8  0  0  0
  NHEDC1 WILD-TYPE 94  5  4 10
D81V14, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  R0              8               94
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(82) Variable = OR2T27 MUTATION ANALYSIS
D82V1, survival
                  sevent
clus2               0  1
  OR2T27 MUTATED    5  2
  OR2T27 WILD-TYPE 94 48
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               7              142 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               48 
$`OR2T27 MUTATED`
TCGA-35-5375 TCGA-44-2659 TCGA-44-6778 TCGA-50-6590 TCGA-64-5781 TCGA-67-3771 
        8.68        17.39        36.49        42.31        39.52         1.97 
TCGA-73-4658 
       52.57 

$`OR2T27 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2T27 MUTATED OR2T27 WILD-TYPE 
            1.97             0.07 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           52.57            85.32 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           36.49            13.15 
[1] "2.0 - 52.6 (36.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
[1] "hr=" "1.9"
D82V2, continuous
D82V3, binary
                  cls
clus                0  1
  OR2T27 MUTATED    5  3
  OR2T27 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      5    3
  OR2T27 WILD-TYPE   88   76
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D82V4, continuous
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T27 MUTATED                            0                                 1
  OR2T27 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T27 MUTATED                                                    7
  OR2T27 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T27 MUTATED                                            0
  OR2T27 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR2T27 MUTATED                                0
  OR2T27 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                                    0
  OR2T27 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                              0                             0
  OR2T27 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2T27 MUTATED                                   0
  OR2T27 WILD-TYPE                                 2
D82V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR2T27 MUTATED     3   5   0   0
  OR2T27 WILD-TYPE  38 103  14   8
D82V6, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  T1              3               38
  T2              5              103
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR2T27 MUTATED    6  1     1
  OR2T27 WILD-TYPE 89 36    34
D82V7, multiclass
       clus
vv      OR2T27 MUTATED OR2T27 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR2T27 MUTATED     7   0   1
  OR2T27 WILD-TYPE 130   9  21
D82V8, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR2T27 MUTATED    6  1   1  0
  OR2T27 WILD-TYPE 82 32  38  9
D82V9, multiclass
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D82V10, binary
                  cls
clus                 0   1
  OR2T27 MUTATED     0   8
  OR2T27 WILD-TYPE  16 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      0    8
  OR2T27 WILD-TYPE   16  148
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               0               16
  YES              8              148
D82V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T27 MUTATED                                             6
  OR2T27 WILD-TYPE                                          56
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T27 MUTATED                                        2              0
  OR2T27 WILD-TYPE                                     44             28
                  vv
clus               LIFELONG NON-SMOKER
  OR2T27 MUTATED                     0
  OR2T27 WILD-TYPE                  24
D82V12, multiclass
                                             clus
vv                                            OR2T27 MUTATED OR2T27 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D82V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR2T27 MUTATED    6  0  0  0
  OR2T27 WILD-TYPE 96  5  4 10
D82V14, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(83) Variable = SYT4 MUTATION ANALYSIS
D83V1, survival
                sevent
clus2             0  1
  SYT4 MUTATED    5  3
  SYT4 WILD-TYPE 94 47
  SYT4 MUTATED SYT4 WILD-TYPE 
             8            141 
  SYT4 MUTATED SYT4 WILD-TYPE 
             3             47 
$`SYT4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-6774 TCGA-50-5931 TCGA-50-6590 TCGA-73-4666 
       19.92         9.96         5.42         8.78        42.31        20.28 
TCGA-73-4668 TCGA-73-4675 
       15.35         1.32 

$`SYT4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       29.95         0.46         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SYT4 MUTATED SYT4 WILD-TYPE 
          1.32           0.07 
  SYT4 MUTATED SYT4 WILD-TYPE 
         42.31          85.32 
  SYT4 MUTATED SYT4 WILD-TYPE 
        12.655         13.870 
[1] "1.3 - 42.3 (12.7)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
[1] "hr=" "1.8"
D83V2, continuous
D83V3, binary
                cls
clus              0  1
  SYT4 MUTATED    6  5
  SYT4 WILD-TYPE 87 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      6    5
  SYT4 WILD-TYPE   87   74
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  FEMALE            6             87
  MALE              5             74
D83V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SYT4 MUTATED                            0                                 2
  SYT4 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SYT4 MUTATED                                                    7
  SYT4 WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SYT4 MUTATED                                            0
  SYT4 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SYT4 MUTATED                                               0
  SYT4 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SYT4 MUTATED                                0
  SYT4 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SYT4 MUTATED                                    1
  SYT4 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SYT4 MUTATED                              0                             1
  SYT4 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SYT4 MUTATED                                               0
  SYT4 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  SYT4 MUTATED                                   0
  SYT4 WILD-TYPE                                 2
D83V5, multiclass
                vv
clus              T1  T2  T3  T4
  SYT4 MUTATED     2   6   2   1
  SYT4 WILD-TYPE  39 102  12   7
D83V6, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            2             12
  T4            1              7
                vv
clus             N0 N1 N2+N3
  SYT4 MUTATED    6  3     2
  SYT4 WILD-TYPE 89 34    33
D83V7, multiclass
       clus
vv      SYT4 MUTATED SYT4 WILD-TYPE
  N0               6             89
  N1               3             34
  N2+N3            2             33
                vv
clus              M0  M1  MX
  SYT4 MUTATED    10   1   0
  SYT4 WILD-TYPE 127   8  22
D83V8, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
                vv
clus              I II III IV
  SYT4 MUTATED    5  1   4  1
  SYT4 WILD-TYPE 83 32  35  8
D83V9, multiclass
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  I              5             83
  II             1             32
  III            4             35
  IV             1              8
D83V10, binary
                cls
clus               0   1
  SYT4 MUTATED     1  10
  SYT4 WILD-TYPE  15 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      1   10
  SYT4 WILD-TYPE   15  146
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  NO             1             15
  YES           10            146
D83V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SYT4 MUTATED                                             6
  SYT4 WILD-TYPE                                          56
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SYT4 MUTATED                                        3              1
  SYT4 WILD-TYPE                                     43             27
                vv
clus             LIFELONG NON-SMOKER
  SYT4 MUTATED                     0
  SYT4 WILD-TYPE                  24
D83V12, multiclass
                                             clus
vv                                            SYT4 MUTATED SYT4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D83V13, continuous
                vv
clus             R0 R1 R2 RX
  SYT4 MUTATED    6  0  1  1
  SYT4 WILD-TYPE 96  5  3  9
D83V14, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  R0            6             96
  R1            0              5
  R2            1              3
  RX            1              9

Clustering(84) Variable = ZSWIM2 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  ZSWIM2 MUTATED    7  5
  ZSWIM2 WILD-TYPE 92 45
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              12              137 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
               5               45 
$`ZSWIM2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-38-4626 TCGA-44-3918 TCGA-44-6145 
       19.92         9.96        26.01        85.32         6.44         3.35 
TCGA-44-6777 TCGA-49-4501 TCGA-49-4514 TCGA-50-5049 TCGA-50-5933 TCGA-73-4658 
       32.45        46.72        43.20        48.82        77.88        52.57 

$`ZSWIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         0.30         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
            3.35             0.07 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
           85.32            83.84 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
          37.825           12.990 
[1] "3.4 - 85.3 (37.8)" "0.1 - 83.8 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
[1] "hr=" "2.2"
D84V2, continuous
D84V3, binary
                  cls
clus                0  1
  ZSWIM2 MUTATED    9  4
  ZSWIM2 WILD-TYPE 84 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      9    4
  ZSWIM2 WILD-TYPE   84   75
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  FEMALE              9               84
  MALE                4               75
D84V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZSWIM2 MUTATED                            0                                 3
  ZSWIM2 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZSWIM2 MUTATED                                                    9
  ZSWIM2 WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZSWIM2 MUTATED                                            0
  ZSWIM2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZSWIM2 MUTATED                                               0
  ZSWIM2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZSWIM2 MUTATED                                0
  ZSWIM2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZSWIM2 MUTATED                                    0
  ZSWIM2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZSWIM2 MUTATED                              0                             1
  ZSWIM2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZSWIM2 MUTATED                                               0
  ZSWIM2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  ZSWIM2 MUTATED                                   0
  ZSWIM2 WILD-TYPE                                 2
D84V5, multiclass
                  vv
clus                T1  T2  T3  T4
  ZSWIM2 MUTATED     3   7   1   2
  ZSWIM2 WILD-TYPE  38 101  13   6
D84V6, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  T1              3               38
  T2              7              101
  T3              1               13
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  ZSWIM2 MUTATED    9  2     1
  ZSWIM2 WILD-TYPE 86 35    34
D84V7, multiclass
       clus
vv      ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  N0                 9               86
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZSWIM2 MUTATED    11   0   2
  ZSWIM2 WILD-TYPE 126   9  20
D84V8, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  M0             11              126
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  ZSWIM2 MUTATED    8  3   2  0
  ZSWIM2 WILD-TYPE 80 30  37  9
D84V9, multiclass
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D84V10, binary
                  cls
clus                 0   1
  ZSWIM2 MUTATED     3  10
  ZSWIM2 WILD-TYPE  13 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      3   10
  ZSWIM2 WILD-TYPE   13  146
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  NO               3               13
  YES             10              146
D84V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZSWIM2 MUTATED                                             4
  ZSWIM2 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZSWIM2 MUTATED                                        4              2
  ZSWIM2 WILD-TYPE                                     42             26
                  vv
clus               LIFELONG NON-SMOKER
  ZSWIM2 MUTATED                     1
  ZSWIM2 WILD-TYPE                  23
D84V12, multiclass
                                             clus
vv                                            ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1               23
D84V13, continuous
                  vv
clus               R0 R1 R2 RX
  ZSWIM2 MUTATED    8  0  0  1
  ZSWIM2 WILD-TYPE 94  5  4  9
D84V14, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  R0              8               94
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(85) Variable = MYL10 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 96 48
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             144 
  MYL10 MUTATED MYL10 WILD-TYPE 
              2              48 
$`MYL10 MUTATED`
TCGA-05-4250 TCGA-05-4398 TCGA-05-4418 TCGA-05-4430 TCGA-73-4676 
        3.98        47.05         8.98        25.02         4.01 

$`MYL10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MYL10 MUTATED MYL10 WILD-TYPE 
           3.98            0.07 
  MYL10 MUTATED MYL10 WILD-TYPE 
          47.05           85.32 
  MYL10 MUTATED MYL10 WILD-TYPE 
           8.98           13.94 
[1] "4.0 - 47.0 (9.0)"  "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
[1] "hr=" "1.4"
D85V2, continuous
D85V3, binary
                 cls
clus               0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 90 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      3    2
  MYL10 WILD-TYPE   90   77
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D85V4, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MYL10 MUTATED                            0                                 3
  MYL10 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MYL10 MUTATED                                                    2
  MYL10 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MYL10 MUTATED                                            0
  MYL10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MYL10 MUTATED                                0
  MYL10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                                    0
  MYL10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                              0                             0
  MYL10 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  MYL10 MUTATED                                   0
  MYL10 WILD-TYPE                                 2
D85V5, multiclass
                 vv
clus               T1  T2  T3  T4
  MYL10 MUTATED     0   2   2   1
  MYL10 WILD-TYPE  41 106  12   7
D85V6, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  T1             0              41
  T2             2             106
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  MYL10 MUTATED    1  2     2
  MYL10 WILD-TYPE 94 35    33
D85V7, multiclass
       clus
vv      MYL10 MUTATED MYL10 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  MYL10 MUTATED     5   0   0
  MYL10 WILD-TYPE 132   9  22
D85V8, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  MYL10 MUTATED    1  1   3  0
  MYL10 WILD-TYPE 87 32  36  9
D85V9, multiclass
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  I               1              87
  II              1              32
  III             3              36
  IV              0               9
D85V10, binary
                 cls
clus                0   1
  MYL10 MUTATED     1   4
  MYL10 WILD-TYPE  15 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   15  152
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              15
  YES             4             152
D85V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MYL10 MUTATED                                             3
  MYL10 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MYL10 MUTATED                                        0              2
  MYL10 WILD-TYPE                                     46             26
                 vv
clus              LIFELONG NON-SMOKER
  MYL10 MUTATED                     0
  MYL10 WILD-TYPE                  24
D85V12, multiclass
                                             clus
vv                                            MYL10 MUTATED MYL10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D85V13, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4675      TCGA-91-6829      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  MYL10 MUTATED    4  0  1  0
  MYL10 WILD-TYPE 98  5  3 10
D85V14, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             1               3
  RX             0              10

Clustering(86) Variable = KRTAP15-1 MUTATION ANALYSIS
D86V1, survival
                     sevent
clus2                  0  1
  KRTAP15-1 MUTATED    3  1
  KRTAP15-1 WILD-TYPE 96 49
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  4                 145 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  49 
$`KRTAP15-1 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-6774 TCGA-67-3771 
        9.96        25.02         5.42         1.97 

$`KRTAP15-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               1.97                0.07 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
              25.02               85.32 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               7.69               14.01 
[1] "2.0 - 25.0 (7.7)"  "0.1 - 85.3 (14.0)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
[1] "hr=" "1.9"
D86V2, continuous
D86V3, binary
                     cls
clus                   0  1
  KRTAP15-1 MUTATED    2  3
  KRTAP15-1 WILD-TYPE 91 76
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      2    3
  KRTAP15-1 WILD-TYPE   91   76
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  FEMALE                 2                  91
  MALE                   3                  76
D86V4, continuous
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  KRTAP15-1 MUTATED                            0
  KRTAP15-1 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP15-1 MUTATED                                   3
  KRTAP15-1 WILD-TYPE                                36
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP15-1 MUTATED                                                    2
  KRTAP15-1 WILD-TYPE                                                112
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP15-1 MUTATED                                            0
  KRTAP15-1 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP15-1 MUTATED                                               0
  KRTAP15-1 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP15-1 MUTATED                                0
  KRTAP15-1 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP15-1 MUTATED                                    0
  KRTAP15-1 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  KRTAP15-1 MUTATED                              0
  KRTAP15-1 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  KRTAP15-1 MUTATED                               0
  KRTAP15-1 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP15-1 MUTATED                                               0
  KRTAP15-1 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) ADENOCARCINOMA
  KRTAP15-1 MUTATED                                   0
  KRTAP15-1 WILD-TYPE                                 2
D86V5, multiclass
                     vv
clus                   T1  T2  T3  T4
  KRTAP15-1 MUTATED     3   1   0   1
  KRTAP15-1 WILD-TYPE  38 107  14   7
D86V6, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  T1                 3                  38
  T2                 1                 107
  T3                 0                  14
  T4                 1                   7
                     vv
clus                  N0 N1 N2+N3
  KRTAP15-1 MUTATED    2  2     1
  KRTAP15-1 WILD-TYPE 93 35    34
D86V7, multiclass
       clus
vv      KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  N0                    2                  93
  N1                    2                  35
  N2+N3                 1                  34
                     vv
clus                   M0  M1  MX
  KRTAP15-1 MUTATED     5   0   0
  KRTAP15-1 WILD-TYPE 132   9  22
D86V8, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
                     vv
clus                   I II III IV
  KRTAP15-1 MUTATED    2  1   2  0
  KRTAP15-1 WILD-TYPE 86 32  37  9
D86V9, multiclass
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  I                   2                  86
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D86V10, binary
                     cls
clus                    0   1
  KRTAP15-1 MUTATED     0   5
  KRTAP15-1 WILD-TYPE  16 151
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      0    5
  KRTAP15-1 WILD-TYPE   16  151
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D86V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRTAP15-1 MUTATED                                             1
  KRTAP15-1 WILD-TYPE                                          61
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRTAP15-1 MUTATED                                        2              2
  KRTAP15-1 WILD-TYPE                                     44             26
                     vv
clus                  LIFELONG NON-SMOKER
  KRTAP15-1 MUTATED                     0
  KRTAP15-1 WILD-TYPE                  24
D86V12, multiclass
                                             clus
vv                                            KRTAP15-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              2
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP15-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               26
  LIFELONG NON-SMOKER                                          24
D86V13, continuous
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4405 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4410          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4427          TCGA-05-4433 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5428          TCGA-35-4122          TCGA-35-4123 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2662          TCGA-44-2666 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5645 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6147 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6775          TCGA-44-6776 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
                     vv
clus                  R0 R1 R2 RX
  KRTAP15-1 MUTATED    4  0  0  0
  KRTAP15-1 WILD-TYPE 98  5  4 10
D86V14, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  R0                 4                  98
  R1                 0                   5
  R2                 0                   4
  RX                 0                  10

Clustering(87) Variable = NTNG1 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2              0  1
  NTNG1 MUTATED    6  4
  NTNG1 WILD-TYPE 93 46
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             10             139 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              4              46 
$`NTNG1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
        9.96        26.01        11.64         8.09         8.32         6.44 
TCGA-49-4488 TCGA-50-6590 TCGA-55-5899 TCGA-73-4668 
       28.57        42.31         2.86        15.35 

$`NTNG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NTNG1 MUTATED NTNG1 WILD-TYPE 
           2.86            0.07 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          42.31           85.32 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          10.80           14.01 
[1] "2.9 - 42.3 (10.8)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
[1] "hr=" "1.8"
D87V2, continuous
D87V3, binary
                 cls
clus               0  1
  NTNG1 MUTATED    7  4
  NTNG1 WILD-TYPE 86 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      7    4
  NTNG1 WILD-TYPE   86   75
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  FEMALE             7              86
  MALE               4              75
D87V4, continuous
[1] "Remove cluster labels:" "NTNG1 MUTATED"         
clus
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NTNG1 MUTATED                            0                                 3
  NTNG1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NTNG1 MUTATED                                                    7
  NTNG1 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NTNG1 MUTATED                                            0
  NTNG1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NTNG1 MUTATED                                               0
  NTNG1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NTNG1 MUTATED                                0
  NTNG1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NTNG1 MUTATED                                    1
  NTNG1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NTNG1 MUTATED                              0                             0
  NTNG1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NTNG1 MUTATED                                               0
  NTNG1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  NTNG1 MUTATED                                   0
  NTNG1 WILD-TYPE                                 2
D87V5, multiclass
                 vv
clus               T1  T2  T3  T4
  NTNG1 MUTATED     4   6   0   1
  NTNG1 WILD-TYPE  37 102  14   7
D87V6, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  NTNG1 MUTATED    7  4     0
  NTNG1 WILD-TYPE 88 33    35
D87V7, multiclass
       clus
vv      NTNG1 MUTATED NTNG1 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  NTNG1 MUTATED    10   0   1
  NTNG1 WILD-TYPE 127   9  21
D87V8, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  NTNG1 MUTATED    8  2   1  0
  NTNG1 WILD-TYPE 80 31  38  9
D87V9, multiclass
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  I               8              80
  II              2              31
  III             1              38
  IV              0               9
D87V10, binary
                 cls
clus                0   1
  NTNG1 MUTATED     0  11
  NTNG1 WILD-TYPE  16 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      0   11
  NTNG1 WILD-TYPE   16  145
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  NO              0              16
  YES            11             145
D87V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NTNG1 MUTATED                                             7
  NTNG1 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NTNG1 MUTATED                                        3              1
  NTNG1 WILD-TYPE                                     43             27
                 vv
clus              LIFELONG NON-SMOKER
  NTNG1 MUTATED                     0
  NTNG1 WILD-TYPE                  24
D87V12, multiclass
                                             clus
vv                                            NTNG1 MUTATED NTNG1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D87V13, continuous
                 vv
clus              R0 R1 R2 RX
  NTNG1 MUTATED    9  0  0  1
  NTNG1 WILD-TYPE 93  5  4  9
D87V14, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  R0             9              93
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(88) Variable = OR2M7 MUTATION ANALYSIS
D88V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    4  5
  OR2M7 WILD-TYPE 95 45
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             140 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              5              45 
$`OR2M7 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-6145 TCGA-44-6774 TCGA-49-4486 TCGA-50-5072 
        9.96        19.10         3.35         5.42        76.21         8.05 
TCGA-50-6593 TCGA-50-6595 TCGA-73-4658 
       11.05         6.21        52.57 

$`OR2M7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
        3.88        25.51        12.16        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           3.35            0.07 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          76.21           85.32 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
           9.96           14.04 
[1] "3.4 - 76.2 (10.0)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
[1] "hr=" "1.4"
D88V2, continuous
D88V3, binary
                 cls
clus               0  1
  OR2M7 MUTATED    5  4
  OR2M7 WILD-TYPE 88 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      5    4
  OR2M7 WILD-TYPE   88   75
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D88V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2M7 MUTATED                            0                                 2
  OR2M7 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2M7 MUTATED                                                    7
  OR2M7 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2M7 MUTATED                                            0
  OR2M7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2M7 MUTATED                                               0
  OR2M7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2M7 MUTATED                                0
  OR2M7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2M7 MUTATED                                    0
  OR2M7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2M7 MUTATED                              0                             0
  OR2M7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2M7 MUTATED                                               0
  OR2M7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2M7 MUTATED                                   0
  OR2M7 WILD-TYPE                                 2
D88V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2M7 MUTATED     4   4   0   1
  OR2M7 WILD-TYPE  37 104  14   7
D88V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             4              37
  T2             4             104
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR2M7 MUTATED    4  1     4
  OR2M7 WILD-TYPE 91 36    31
D88V7, multiclass
       clus
vv      OR2M7 MUTATED OR2M7 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  OR2M7 MUTATED     9   0   0
  OR2M7 WILD-TYPE 128   9  22
D88V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  OR2M7 MUTATED    4  0   5  0
  OR2M7 WILD-TYPE 84 33  34  9
D88V9, multiclass
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D88V10, binary
                 cls
clus                0   1
  OR2M7 MUTATED     1   8
  OR2M7 WILD-TYPE  15 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    8
  OR2M7 WILD-TYPE   15  148
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1              15
  YES             8             148
D88V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2M7 MUTATED                                             3
  OR2M7 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2M7 MUTATED                                        5              1
  OR2M7 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2M7 MUTATED                     0
  OR2M7 WILD-TYPE                  24
D88V12, multiclass
                                             clus
vv                                            OR2M7 MUTATED OR2M7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D88V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR2M7 MUTATED    3  0  0  0
  OR2M7 WILD-TYPE 99  5  4 10
D88V14, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  R0             3              99
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(89) Variable = SATB2 MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  SATB2 MUTATED    9  4
  SATB2 WILD-TYPE 90 46
  SATB2 MUTATED SATB2 WILD-TYPE 
             13             136 
  SATB2 MUTATED SATB2 WILD-TYPE 
              4              46 
$`SATB2 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4420 TCGA-38-4629 TCGA-44-3918 TCGA-44-6777 
       19.92        47.05        29.95        28.37         6.44        32.45 
TCGA-50-5045 TCGA-50-5066 TCGA-50-6594 TCGA-64-1676 TCGA-64-5815 TCGA-73-4670 
       71.47         9.76        12.16        56.81         7.33         0.46 
TCGA-91-6836 
        0.36 

$`SATB2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  SATB2 MUTATED SATB2 WILD-TYPE 
           0.36            0.07 
  SATB2 MUTATED SATB2 WILD-TYPE 
          71.47           85.32 
  SATB2 MUTATED SATB2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 71.5 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
[1] "hr=" "1.5"
D89V2, continuous
D89V3, binary
                 cls
clus               0  1
  SATB2 MUTATED    8  7
  SATB2 WILD-TYPE 85 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      8    7
  SATB2 WILD-TYPE   85   72
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  FEMALE             8              85
  MALE               7              72
D89V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SATB2 MUTATED                            0                                 5
  SATB2 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SATB2 MUTATED                                                    8
  SATB2 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SATB2 MUTATED                                            0
  SATB2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SATB2 MUTATED                                               0
  SATB2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SATB2 MUTATED                                0
  SATB2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SATB2 MUTATED                                    0
  SATB2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SATB2 MUTATED                              0                             1
  SATB2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SATB2 MUTATED                                               1
  SATB2 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  SATB2 MUTATED                                   0
  SATB2 WILD-TYPE                                 2
D89V5, multiclass
                 vv
clus              T1 T2 T3 T4
  SATB2 MUTATED    2  9  3  1
  SATB2 WILD-TYPE 39 99 11  7
D89V6, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             3              11
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  SATB2 MUTATED    9  2     3
  SATB2 WILD-TYPE 86 35    32
D89V7, multiclass
       clus
vv      SATB2 MUTATED SATB2 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  SATB2 MUTATED    12   1   2
  SATB2 WILD-TYPE 125   8  20
D89V8, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  M0            12             125
  M1             1               8
  MX             2              20
                 vv
clus               I II III IV
  SATB2 MUTATED    9  2   3  1
  SATB2 WILD-TYPE 79 31  36  8
D89V9, multiclass
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  I               9              79
  II              2              31
  III             3              36
  IV              1               8
D89V10, binary
                 cls
clus                0   1
  SATB2 MUTATED     2  13
  SATB2 WILD-TYPE  14 143
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      2   13
  SATB2 WILD-TYPE   14  143
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  NO              2              14
  YES            13             143
D89V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SATB2 MUTATED                                             7
  SATB2 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SATB2 MUTATED                                        2              4
  SATB2 WILD-TYPE                                     44             24
                 vv
clus              LIFELONG NON-SMOKER
  SATB2 MUTATED                     1
  SATB2 WILD-TYPE                  23
D89V12, multiclass
                                             clus
vv                                            SATB2 MUTATED SATB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1              23
D89V13, continuous
                 vv
clus              R0 R1 R2 RX
  SATB2 MUTATED   10  0  1  0
  SATB2 WILD-TYPE 92  5  3 10
D89V14, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  R0            10              92
  R1             0               5
  R2             1               3
  RX             0              10

Clustering(90) Variable = OR5F1 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  OR5F1 MUTATED    8  2
  OR5F1 WILD-TYPE 91 48
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             10             139 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              2              48 
$`OR5F1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-44-2659 TCGA-44-4112 TCGA-49-4514 
        9.96        26.01         7.36        17.39         4.60        43.20 
TCGA-50-5049 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
       48.82        42.31        39.09        39.52 

$`OR5F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5F1 MUTATED OR5F1 WILD-TYPE 
           4.60            0.07 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          48.82           85.32 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          32.55           13.15 
[1] "4.6 - 48.8 (32.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
[1] "hr=" "2.5"
D90V2, continuous
D90V3, binary
                 cls
clus               0  1
  OR5F1 MUTATED    7  5
  OR5F1 WILD-TYPE 86 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      7    5
  OR5F1 WILD-TYPE   86   74
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D90V4, continuous
[1] "Remove cluster labels:" "OR5F1 MUTATED"         
clus
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5F1 MUTATED                            0                                 4
  OR5F1 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5F1 MUTATED                                                    7
  OR5F1 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5F1 MUTATED                                            0
  OR5F1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5F1 MUTATED                                               0
  OR5F1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5F1 MUTATED                                0
  OR5F1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5F1 MUTATED                                    0
  OR5F1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5F1 MUTATED                              0                             1
  OR5F1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5F1 MUTATED                                               0
  OR5F1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5F1 MUTATED                                   0
  OR5F1 WILD-TYPE                                 2
D90V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5F1 MUTATED     3   7   1   1
  OR5F1 WILD-TYPE  38 101  13   7
D90V6, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR5F1 MUTATED    9  3     0
  OR5F1 WILD-TYPE 86 34    35
D90V7, multiclass
       clus
vv      OR5F1 MUTATED OR5F1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR5F1 MUTATED    12   0   0
  OR5F1 WILD-TYPE 125   9  22
D90V8, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  OR5F1 MUTATED    8  3   1  0
  OR5F1 WILD-TYPE 80 30  38  9
D90V9, multiclass
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  I               8              80
  II              3              30
  III             1              38
  IV              0               9
D90V10, binary
                 cls
clus                0   1
  OR5F1 MUTATED     1  11
  OR5F1 WILD-TYPE  15 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      1   11
  OR5F1 WILD-TYPE   15  145
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  NO              1              15
  YES            11             145
D90V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5F1 MUTATED                                             7
  OR5F1 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5F1 MUTATED                                        4              0
  OR5F1 WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  OR5F1 MUTATED                     0
  OR5F1 WILD-TYPE                  24
D90V12, multiclass
                                             clus
vv                                            OR5F1 MUTATED OR5F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D90V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR5F1 MUTATED    8  0  0  2
  OR5F1 WILD-TYPE 94  5  4  8
D90V14, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             2               8

Clustering(91) Variable = OR2W5 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  OR2W5 MUTATED    5  2
  OR2W5 WILD-TYPE 94 48
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             142 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              48 
$`OR2W5 MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-44-2662 TCGA-49-6743 TCGA-50-5044 TCGA-50-5935 
       14.93        25.02        15.78        12.13        20.48        21.47 
TCGA-67-3771 
        1.97 

$`OR2W5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2W5 MUTATED OR2W5 WILD-TYPE 
           1.97            0.07 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          25.02           85.32 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          15.78           13.15 
[1] "2.0 - 25.0 (15.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
[1] "hr=" "1.4"
D91V2, continuous
D91V3, binary
                 cls
clus               0  1
  OR2W5 MUTATED    5  2
  OR2W5 WILD-TYPE 88 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      5    2
  OR2W5 WILD-TYPE   88   77
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  FEMALE             5              88
  MALE               2              77
D91V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2W5 MUTATED                            0                                 2
  OR2W5 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2W5 MUTATED                                                    4
  OR2W5 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2W5 MUTATED                                            0
  OR2W5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2W5 MUTATED                                               0
  OR2W5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2W5 MUTATED                                1
  OR2W5 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2W5 MUTATED                                    0
  OR2W5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2W5 MUTATED                              0                             0
  OR2W5 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2W5 MUTATED                                               0
  OR2W5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2W5 MUTATED                                   0
  OR2W5 WILD-TYPE                                 2
D91V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2W5 MUTATED     3   3   0   1
  OR2W5 WILD-TYPE  38 105  14   7
D91V6, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR2W5 MUTATED    4  2     1
  OR2W5 WILD-TYPE 91 35    34
D91V7, multiclass
       clus
vv      OR2W5 MUTATED OR2W5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR2W5 MUTATED     6   0   1
  OR2W5 WILD-TYPE 131   9  21
D91V8, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR2W5 MUTATED    4  1   2  0
  OR2W5 WILD-TYPE 84 32  37  9
D91V9, multiclass
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D91V10, binary
                 cls
clus                0   1
  OR2W5 MUTATED     1   6
  OR2W5 WILD-TYPE  15 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      1    6
  OR2W5 WILD-TYPE   15  150
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  NO              1              15
  YES             6             150
D91V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2W5 MUTATED                                             3
  OR2W5 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2W5 MUTATED                                        1              1
  OR2W5 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2W5 MUTATED                     0
  OR2W5 WILD-TYPE                  24
D91V12, multiclass
                                             clus
vv                                            OR2W5 MUTATED OR2W5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D91V13, continuous
[1] "Remove cluster labels:" "OR2W5 MUTATED"         
clus
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4424      TCGA-05-4427 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2666      TCGA-44-2668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  OR2W5 MUTATED    4  0  0  0
  OR2W5 WILD-TYPE 98  5  4 10
D91V14, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(92) Variable = CMKLR1 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  CMKLR1 MUTATED    3  3
  CMKLR1 WILD-TYPE 96 47
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               6              143 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               3               47 
$`CMKLR1 MUTATED`
TCGA-05-4397 TCGA-05-4424 TCGA-49-4507 TCGA-49-6744 TCGA-50-5939 TCGA-67-3770 
       24.03        30.02         8.81        12.99        15.12         0.99 

$`CMKLR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
            0.99             0.07 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
           30.02            85.32 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
          14.055           13.870 
[1] "1.0 - 30.0 (14.1)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
[1] "hr=" "2.3"
D92V2, continuous
D92V3, binary
                  cls
clus                0  1
  CMKLR1 MUTATED    3  4
  CMKLR1 WILD-TYPE 90 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      3    4
  CMKLR1 WILD-TYPE   90   75
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D92V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CMKLR1 MUTATED                            0                                 5
  CMKLR1 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CMKLR1 MUTATED                                                    2
  CMKLR1 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CMKLR1 MUTATED                                            0
  CMKLR1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CMKLR1 MUTATED                                               0
  CMKLR1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CMKLR1 MUTATED                                0
  CMKLR1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CMKLR1 MUTATED                                    0
  CMKLR1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CMKLR1 MUTATED                              0                             0
  CMKLR1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CMKLR1 MUTATED                                               0
  CMKLR1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CMKLR1 MUTATED                                   0
  CMKLR1 WILD-TYPE                                 2
D92V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CMKLR1 MUTATED     1   4   2   0
  CMKLR1 WILD-TYPE  40 104  12   8
D92V6, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CMKLR1 MUTATED    4  3     0
  CMKLR1 WILD-TYPE 91 34    35
D92V7, multiclass
       clus
vv      CMKLR1 MUTATED CMKLR1 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  CMKLR1 MUTATED     6   0   1
  CMKLR1 WILD-TYPE 131   9  21
D92V8, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  CMKLR1 MUTATED    3  3   1  0
  CMKLR1 WILD-TYPE 85 30  38  9
D92V9, multiclass
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D92V10, binary
                  cls
clus                 0   1
  CMKLR1 MUTATED     1   6
  CMKLR1 WILD-TYPE  15 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      1    6
  CMKLR1 WILD-TYPE   15  150
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  NO               1               15
  YES              6              150
D92V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CMKLR1 MUTATED                                             4
  CMKLR1 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CMKLR1 MUTATED                                        2              1
  CMKLR1 WILD-TYPE                                     44             27
                  vv
clus               LIFELONG NON-SMOKER
  CMKLR1 MUTATED                     0
  CMKLR1 WILD-TYPE                  24
D92V12, multiclass
                                             clus
vv                                            CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D92V13, continuous
[1] "Remove cluster labels:" "CMKLR1 MUTATED"        
clus
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4427       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4626       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2662       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6147 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  CMKLR1 MUTATED    3  1  0  2
  CMKLR1 WILD-TYPE 99  4  4  8
D92V14, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  R0              3               99
  R1              1                4
  R2              0                4
  RX              2                8

Clustering(93) Variable = AKR1B10 MUTATION ANALYSIS
D93V1, survival
                   sevent
clus2                0  1
  AKR1B10 MUTATED    1  2
  AKR1B10 WILD-TYPE 98 48
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                3               146 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                48 
$`AKR1B10 MUTATED`
TCGA-44-6777 TCGA-49-6743 TCGA-91-6829 
       32.45        12.13        41.33 

$`AKR1B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            12.13              0.07 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            41.33             85.32 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            32.45             13.51 
[1] "12.1 - 41.3 (32.5)" "0.1 - 85.3 (13.5)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
[1] "hr=" "1.4"
D93V2, continuous
D93V3, binary
                   cls
clus                 0  1
  AKR1B10 MUTATED    2  2
  AKR1B10 WILD-TYPE 91 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      2    2
  AKR1B10 WILD-TYPE   91   77
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  FEMALE               2                91
  MALE                 2                77
D93V4, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  AKR1B10 MUTATED                            0
  AKR1B10 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  AKR1B10 MUTATED                                   0
  AKR1B10 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AKR1B10 MUTATED                                                    2
  AKR1B10 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AKR1B10 MUTATED                                            0
  AKR1B10 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AKR1B10 MUTATED                                               1
  AKR1B10 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  AKR1B10 MUTATED                                1
  AKR1B10 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  AKR1B10 MUTATED                                    0
  AKR1B10 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AKR1B10 MUTATED                              0                             0
  AKR1B10 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AKR1B10 MUTATED                                               0
  AKR1B10 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  AKR1B10 MUTATED                                   0
  AKR1B10 WILD-TYPE                                 2
D93V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  AKR1B10 MUTATED     1   3   0   0
  AKR1B10 WILD-TYPE  40 105  14   8
D93V6, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  AKR1B10 MUTATED    2  0     1
  AKR1B10 WILD-TYPE 93 37    34
D93V7, multiclass
       clus
vv      AKR1B10 MUTATED AKR1B10 WILD-TYPE
  N0                  2                93
  N1                  0                37
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  AKR1B10 MUTATED     1   0   3
  AKR1B10 WILD-TYPE 136   9  19
D93V8, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  M0               1               136
  M1               0                 9
  MX               3                19
                   vv
clus                 I II III IV
  AKR1B10 MUTATED    3  0   1  0
  AKR1B10 WILD-TYPE 85 33  38  9
D93V9, multiclass
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  I                 3                85
  II                0                33
  III               1                38
  IV                0                 9
D93V10, binary
                   cls
clus                  0   1
  AKR1B10 MUTATED     1   3
  AKR1B10 WILD-TYPE  15 153
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      1    3
  AKR1B10 WILD-TYPE   15  153
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  NO                1                15
  YES               3               153
D93V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  AKR1B10 MUTATED                                             3
  AKR1B10 WILD-TYPE                                          59
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  AKR1B10 MUTATED                                        1              0
  AKR1B10 WILD-TYPE                                     45             28
                   vv
clus                LIFELONG NON-SMOKER
  AKR1B10 MUTATED                     0
  AKR1B10 WILD-TYPE                  24
D93V12, multiclass
                                             clus
vv                                            AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D93V13, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6778        TCGA-44-6779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  AKR1B10 MUTATED     1   0   0   0
  AKR1B10 WILD-TYPE 101   5   4  10
D93V14, multiclass
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                1               120 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6148        TCGA-44-6775        TCGA-49-4486 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6744        TCGA-49-6767        TCGA-50-5055 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5066        TCGA-55-1592        TCGA-55-1594        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3773        TCGA-67-4679        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-75-6211        TCGA-75-6212        TCGA-80-5611        TCGA-86-6562 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 

Clustering(94) Variable = DACH1 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  DACH1 MUTATED    7  3
  DACH1 WILD-TYPE 92 47
  DACH1 MUTATED DACH1 WILD-TYPE 
             10             139 
  DACH1 MUTATED DACH1 WILD-TYPE 
              3              47 
$`DACH1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4420 TCGA-49-4494 TCGA-49-6743 TCGA-55-1596 
        3.98        19.92        29.95        35.54        12.13        45.17 
TCGA-64-1678 TCGA-64-5778 TCGA-67-3771 TCGA-91-6829 
       39.09        30.44         1.97        41.33 

$`DACH1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  DACH1 MUTATED DACH1 WILD-TYPE 
           1.97            0.07 
  DACH1 MUTATED DACH1 WILD-TYPE 
          45.17           85.32 
  DACH1 MUTATED DACH1 WILD-TYPE 
         30.195          13.150 
[1] "2.0 - 45.2 (30.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
[1] "hr=" "1.5"
D94V2, continuous
D94V3, binary
                 cls
clus               0  1
  DACH1 MUTATED    4  7
  DACH1 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      4    7
  DACH1 WILD-TYPE   89   72
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D94V4, continuous
[1] "Remove cluster labels:" "DACH1 MUTATED"         
clus
  DACH1 MUTATED DACH1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DACH1 MUTATED                            0                                 3
  DACH1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DACH1 MUTATED                                                    5
  DACH1 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DACH1 MUTATED                                            0
  DACH1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DACH1 MUTATED                                               2
  DACH1 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  DACH1 MUTATED                                1
  DACH1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  DACH1 MUTATED                                    0
  DACH1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DACH1 MUTATED                              0                             0
  DACH1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DACH1 MUTATED                                               0
  DACH1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  DACH1 MUTATED                                   0
  DACH1 WILD-TYPE                                 2
D94V5, multiclass
                 vv
clus               T1  T2  T3  T4
  DACH1 MUTATED     2   7   2   0
  DACH1 WILD-TYPE  39 101  12   8
D94V6, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             2              12
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  DACH1 MUTATED    7  2     2
  DACH1 WILD-TYPE 88 35    33
D94V7, multiclass
       clus
vv      DACH1 MUTATED DACH1 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  DACH1 MUTATED     9   0   2
  DACH1 WILD-TYPE 128   9  20
D94V8, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  DACH1 MUTATED    6  2   3  0
  DACH1 WILD-TYPE 82 31  36  9
D94V9, multiclass
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  I               6              82
  II              2              31
  III             3              36
  IV              0               9
D94V10, binary
                 cls
clus                0   1
  DACH1 MUTATED     0  11
  DACH1 WILD-TYPE  16 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      0   11
  DACH1 WILD-TYPE   16  145
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  NO              0              16
  YES            11             145
D94V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  DACH1 MUTATED                                             7
  DACH1 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  DACH1 MUTATED                                        2              2
  DACH1 WILD-TYPE                                     44             26
                 vv
clus              LIFELONG NON-SMOKER
  DACH1 MUTATED                     0
  DACH1 WILD-TYPE                  24
D94V12, multiclass
                                             clus
vv                                            DACH1 MUTATED DACH1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D94V13, continuous
                 vv
clus              R0 R1 R2 RX
  DACH1 MUTATED    7  0  1  1
  DACH1 WILD-TYPE 95  5  3  9
D94V14, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  R0             7              95
  R1             0               5
  R2             1               3
  RX             1               9

Clustering(95) Variable = OR10K2 MUTATION ANALYSIS
D95V1, survival
                  sevent
clus2               0  1
  OR10K2 MUTATED    2  5
  OR10K2 WILD-TYPE 97 45
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               7              142 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               5               45 
$`OR10K2 MUTATED`
TCGA-44-2659 TCGA-49-4487 TCGA-49-4507 TCGA-49-6743 TCGA-50-5931 TCGA-50-5933 
       17.39        28.11         8.81        12.13         8.78        77.88 
TCGA-50-6590 
       42.31 

$`OR10K2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10K2 MUTATED OR10K2 WILD-TYPE 
            8.78             0.07 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           77.88            85.32 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           17.39            13.51 
[1] "8.8 - 77.9 (17.4)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
[1] "hr=" "1.4"
D95V2, continuous
D95V3, binary
                  cls
clus                0  1
  OR10K2 MUTATED    6  3
  OR10K2 WILD-TYPE 87 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      6    3
  OR10K2 WILD-TYPE   87   76
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D95V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10K2 MUTATED                            0                                 0
  OR10K2 WILD-TYPE                          2                                39
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10K2 MUTATED                                                    8
  OR10K2 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10K2 MUTATED                                            0
  OR10K2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10K2 MUTATED                                               0
  OR10K2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10K2 MUTATED                                1
  OR10K2 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10K2 MUTATED                                    0
  OR10K2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10K2 MUTATED                              0                             0
  OR10K2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10K2 MUTATED                                               0
  OR10K2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR10K2 MUTATED                                   0
  OR10K2 WILD-TYPE                                 2
D95V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10K2 MUTATED     3   3   2   1
  OR10K2 WILD-TYPE  38 105  12   7
D95V6, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              2               12
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR10K2 MUTATED    4  2     3
  OR10K2 WILD-TYPE 91 35    32
D95V7, multiclass
       clus
vv      OR10K2 MUTATED OR10K2 WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  OR10K2 MUTATED     7   1   1
  OR10K2 WILD-TYPE 130   8  21
D95V8, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  OR10K2 MUTATED    4  1   3  1
  OR10K2 WILD-TYPE 84 32  36  8
D95V9, multiclass
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  I                4               84
  II               1               32
  III              3               36
  IV               1                8
D95V10, binary
                  cls
clus                 0   1
  OR10K2 MUTATED     2   7
  OR10K2 WILD-TYPE  14 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      2    7
  OR10K2 WILD-TYPE   14  149
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  NO               2               14
  YES              7              149
D95V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10K2 MUTATED                                             7
  OR10K2 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10K2 MUTATED                                        0              0
  OR10K2 WILD-TYPE                                     46             28
                  vv
clus               LIFELONG NON-SMOKER
  OR10K2 MUTATED                     0
  OR10K2 WILD-TYPE                  24
D95V12, multiclass
                                             clus
vv                                            OR10K2 MUTATED OR10K2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D95V13, continuous
[1] "Remove cluster labels:" "OR10K2 MUTATED"        
clus
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2662       TCGA-44-2666 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  OR10K2 MUTATED    4  0  0  1
  OR10K2 WILD-TYPE 98  5  4  9
D95V14, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  R0              4               98
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(96) Variable = ADAMTS16 MUTATION ANALYSIS
D96V1, survival
                    sevent
clus2                 0  1
  ADAMTS16 MUTATED   13  7
  ADAMTS16 WILD-TYPE 86 43
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                20                129 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                 7                 43 
$`ADAMTS16 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 
        9.96        24.03         8.02        29.95        26.01        25.02 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 TCGA-44-3919 TCGA-44-5643 TCGA-50-5049 
       44.61        19.10        13.15         6.21         3.48        48.82 
TCGA-50-6594 TCGA-55-1592 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 
       12.16        23.05         1.97        23.38        15.35         0.46 
TCGA-91-6828 TCGA-91-6836 
        1.22         0.36 

$`ADAMTS16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       11.64         5.19        18.87        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
        3.88        25.51        11.05         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       52.57        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
              0.36               0.07 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             48.82              85.32 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             14.25              13.87 
[1] "0.4 - 48.8 (14.2)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
[1] "hr=" "1.4"
D96V2, continuous
D96V3, binary
                    cls
clus                  0  1
  ADAMTS16 MUTATED    9 13
  ADAMTS16 WILD-TYPE 84 66
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      9   13
  ADAMTS16 WILD-TYPE   84   66
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  FEMALE                9                 84
  MALE                 13                 66
D96V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  ADAMTS16 MUTATED                            0
  ADAMTS16 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS16 MUTATED                                   6
  ADAMTS16 WILD-TYPE                                33
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS16 MUTATED                                                   15
  ADAMTS16 WILD-TYPE                                                 99
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS16 MUTATED                                            0
  ADAMTS16 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS16 MUTATED                                               0
  ADAMTS16 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS16 MUTATED                                0
  ADAMTS16 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS16 MUTATED                                    1
  ADAMTS16 WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS16 MUTATED                              0                             0
  ADAMTS16 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS16 MUTATED                                               0
  ADAMTS16 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  ADAMTS16 MUTATED                                   0
  ADAMTS16 WILD-TYPE                                 2
D96V5, multiclass
                    vv
clus                 T1 T2 T3 T4
  ADAMTS16 MUTATED    3 16  2  1
  ADAMTS16 WILD-TYPE 38 92 12  7
D96V6, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  T1                3                 38
  T2               16                 92
  T3                2                 12
  T4                1                  7
                    vv
clus                 N0 N1 N2+N3
  ADAMTS16 MUTATED   11  6     3
  ADAMTS16 WILD-TYPE 84 31    32
D96V7, multiclass
       clus
vv      ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  N0                  11                 84
  N1                   6                 31
  N2+N3                3                 32
                    vv
clus                  M0  M1  MX
  ADAMTS16 MUTATED    17   3   2
  ADAMTS16 WILD-TYPE 120   6  20
D96V8, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  M0               17                120
  M1                3                  6
  MX                2                 20
                    vv
clus                  I II III IV
  ADAMTS16 MUTATED   11  4   4  3
  ADAMTS16 WILD-TYPE 77 29  35  6
D96V9, multiclass
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  I                 11                 77
  II                 4                 29
  III                4                 35
  IV                 3                  6
D96V10, binary
                    cls
clus                   0   1
  ADAMTS16 MUTATED     2  20
  ADAMTS16 WILD-TYPE  14 136
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      2   20
  ADAMTS16 WILD-TYPE   14  136
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  NO                 2                 14
  YES               20                136
D96V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ADAMTS16 MUTATED                                            10
  ADAMTS16 WILD-TYPE                                          52
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ADAMTS16 MUTATED                                        4              5
  ADAMTS16 WILD-TYPE                                     42             23
                    vv
clus                 LIFELONG NON-SMOKER
  ADAMTS16 MUTATED                     2
  ADAMTS16 WILD-TYPE                  22
D96V12, multiclass
                                             clus
vv                                            ADAMTS16 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            ADAMTS16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              23
  LIFELONG NON-SMOKER                                         22
D96V13, continuous
                    vv
clus                 R0 R1 R2 RX
  ADAMTS16 MUTATED   15  0  1  0
  ADAMTS16 WILD-TYPE 87  5  3 10
D96V14, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  R0               15                 87
  R1                0                  5
  R2                1                  3
  RX                0                 10

Clustering(97) Variable = ARHGAP36 MUTATION ANALYSIS
D97V1, survival
                    sevent
clus2                 0  1
  ARHGAP36 MUTATED    7  3
  ARHGAP36 WILD-TYPE 92 47
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                10                139 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 3                 47 
$`ARHGAP36 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-2657 TCGA-44-3918 TCGA-44-6777 TCGA-50-5049 
       19.92         9.96        13.15         6.44        32.45        48.82 
TCGA-55-1592 TCGA-55-5899 TCGA-64-5778 TCGA-91-6836 
       23.05         2.86        30.44         0.36 

$`ARHGAP36 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
              0.36               0.07 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
             48.82              85.32 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
            16.535             13.870 
[1] "0.4 - 48.8 (16.5)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
[1] "hr=" "1"  
D97V2, continuous
D97V3, binary
                    cls
clus                  0  1
  ARHGAP36 MUTATED    6  7
  ARHGAP36 WILD-TYPE 87 72
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      6    7
  ARHGAP36 WILD-TYPE   87   72
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  FEMALE                6                 87
  MALE                  7                 72
D97V4, continuous
[1] "Remove cluster labels:" "ARHGAP36 MUTATED"      
clus
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-71-6725         TCGA-73-4659 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  ARHGAP36 MUTATED                            0
  ARHGAP36 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  ARHGAP36 MUTATED                                   3
  ARHGAP36 WILD-TYPE                                36
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ARHGAP36 MUTATED                                                    8
  ARHGAP36 WILD-TYPE                                                106
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ARHGAP36 MUTATED                                            0
  ARHGAP36 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ARHGAP36 MUTATED                                               1
  ARHGAP36 WILD-TYPE                                             1
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  ARHGAP36 MUTATED                                0
  ARHGAP36 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  ARHGAP36 MUTATED                                    0
  ARHGAP36 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ARHGAP36 MUTATED                              0                             1
  ARHGAP36 WILD-TYPE                            2                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ARHGAP36 MUTATED                                               0
  ARHGAP36 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  ARHGAP36 MUTATED                                   0
  ARHGAP36 WILD-TYPE                                 2
D97V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  ARHGAP36 MUTATED     2   8   2   1
  ARHGAP36 WILD-TYPE  39 100  12   7
D97V6, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  T1                2                 39
  T2                8                100
  T3                2                 12
  T4                1                  7
                    vv
clus                 N0 N1 N2+N3
  ARHGAP36 MUTATED    8  2     1
  ARHGAP36 WILD-TYPE 87 35    34
D97V7, multiclass
       clus
vv      ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  N0                   8                 87
  N1                   2                 35
  N2+N3                1                 34
                    vv
clus                  M0  M1  MX
  ARHGAP36 MUTATED    10   0   3
  ARHGAP36 WILD-TYPE 127   9  19
D97V8, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  M0               10                127
  M1                0                  9
  MX                3                 19
                    vv
clus                  I II III IV
  ARHGAP36 MUTATED   10  1   2  0
  ARHGAP36 WILD-TYPE 78 32  37  9
D97V9, multiclass
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  I                 10                 78
  II                 1                 32
  III                2                 37
  IV                 0                  9
D97V10, binary
                    cls
clus                   0   1
  ARHGAP36 MUTATED     2  11
  ARHGAP36 WILD-TYPE  14 145
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      2   11
  ARHGAP36 WILD-TYPE   14  145
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  NO                 2                 14
  YES               11                145
D97V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ARHGAP36 MUTATED                                             7
  ARHGAP36 WILD-TYPE                                          55
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ARHGAP36 MUTATED                                        2              3
  ARHGAP36 WILD-TYPE                                     44             25
                    vv
clus                 LIFELONG NON-SMOKER
  ARHGAP36 MUTATED                     0
  ARHGAP36 WILD-TYPE                  24
D97V12, multiclass
                                             clus
vv                                            ARHGAP36 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            ARHGAP36 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         24
D97V13, continuous
                    vv
clus                 R0 R1 R2 RX
  ARHGAP36 MUTATED    8  0  1  1
  ARHGAP36 WILD-TYPE 94  5  3  9
D97V14, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  R0                8                 94
  R1                0                  5
  R2                1                  3
  RX                1                  9

Clustering(98) Variable = FABP12 MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2               0  1
  FABP12 MUTATED    1  1
  FABP12 WILD-TYPE 98 49
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               49 
$`FABP12 MUTATED`
TCGA-35-4122 TCGA-50-6593 
        7.36        11.05 

$`FABP12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  FABP12 MUTATED FABP12 WILD-TYPE 
            7.36             0.07 
  FABP12 MUTATED FABP12 WILD-TYPE 
           11.05            85.32 
  FABP12 MUTATED FABP12 WILD-TYPE 
           9.205           14.010 
[1] "7.4 - 11.1 (9.2)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-1592       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6543 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D98V2, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              153 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4422 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4425       TCGA-05-4426       TCGA-05-4427 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-49-6767       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6642       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-86-6562 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
D98V3, binary
                  cls
clus                0  1
  FABP12 MUTATED    1  2
  FABP12 WILD-TYPE 92 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      1    2
  FABP12 WILD-TYPE   92   77
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  FEMALE              1               92
  MALE                2               77
D98V4, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FABP12 MUTATED                            0                                 1
  FABP12 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FABP12 MUTATED                                                    2
  FABP12 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FABP12 MUTATED                                            0
  FABP12 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FABP12 MUTATED                                               0
  FABP12 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FABP12 MUTATED                                0
  FABP12 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FABP12 MUTATED                                    0
  FABP12 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FABP12 MUTATED                              0                             0
  FABP12 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FABP12 MUTATED                                               0
  FABP12 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  FABP12 MUTATED                                   0
  FABP12 WILD-TYPE                                 2
D98V5, multiclass
                  vv
clus                T1  T2  T3  T4
  FABP12 MUTATED     2   1   0   0
  FABP12 WILD-TYPE  39 107  14   8
D98V6, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  T1              2               39
  T2              1              107
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  FABP12 MUTATED    1  1     1
  FABP12 WILD-TYPE 94 36    34
D98V7, multiclass
       clus
vv      FABP12 MUTATED FABP12 WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  FABP12 MUTATED     3   0   0
  FABP12 WILD-TYPE 134   9  22
D98V8, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  FABP12 MUTATED    1  1   1  0
  FABP12 WILD-TYPE 87 32  38  9
D98V9, multiclass
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  I                1               87
  II               1               32
  III              1               38
  IV               0                9
D98V10, binary
                  cls
clus                 0   1
  FABP12 MUTATED     0   3
  FABP12 WILD-TYPE  16 153
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      0    3
  FABP12 WILD-TYPE   16  153
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  NO               0               16
  YES              3              153
D98V11, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              112 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4422       TCGA-05-4424 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4629 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4490 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5051 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5931       TCGA-50-5939       TCGA-50-5941 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-6590       TCGA-55-1596       TCGA-55-6543 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-75-5122       TCGA-75-5126 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6829       TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FABP12 MUTATED                                             2
  FABP12 WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FABP12 MUTATED                                        1              0
  FABP12 WILD-TYPE                                     45             28
                  vv
clus               LIFELONG NON-SMOKER
  FABP12 MUTATED                     0
  FABP12 WILD-TYPE                  24
D98V12, multiclass
                                             clus
vv                                            FABP12 MUTATED FABP12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D98V13, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4123       TCGA-35-5375 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  FABP12 MUTATED     2   0   0   0
  FABP12 WILD-TYPE 100   5   4  10
D98V14, multiclass
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              119 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4422 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4425       TCGA-05-4426       TCGA-05-4427 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2657 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6767       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1596       TCGA-55-5899 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 

Clustering(99) Variable = C7 MUTATION ANALYSIS
D99V1, survival
              sevent
clus2           0  1
  C7 MUTATED    6  6
  C7 WILD-TYPE 93 44
  C7 MUTATED C7 WILD-TYPE 
          12          137 
  C7 MUTATED C7 WILD-TYPE 
           6           44 
$`C7 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 
       19.92         9.96        24.03        11.64        44.61        19.10 
TCGA-44-3398 TCGA-44-6144 TCGA-49-4510 TCGA-50-6592 TCGA-55-6642 TCGA-91-6831 
        8.32         0.30        29.46        25.51        32.61         1.28 

$`C7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       49.02        28.37        35.28         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  C7 MUTATED C7 WILD-TYPE 
        0.30         0.07 
  C7 MUTATED C7 WILD-TYPE 
       44.61        85.32 
  C7 MUTATED C7 WILD-TYPE 
       19.51        13.15 
[1] "0.3 - 44.6 (19.5)" "0.1 - 85.3 (13.2)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
[1] "hr=" "1.9"
D99V2, continuous
D99V3, binary
              cls
clus            0  1
  C7 MUTATED    4 10
  C7 WILD-TYPE 89 69
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      4   10
  C7 WILD-TYPE   89   69
        clus
vv       C7 MUTATED C7 WILD-TYPE
  FEMALE          4           89
  MALE           10           69
D99V4, continuous
[1] "Remove cluster labels:" "C7 MUTATED"            
clus
  C7 MUTATED C7 WILD-TYPE 
           1           11 
  TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-64-1677   TCGA-64-5778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-71-6725   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4676 
"C7 WILD-TYPE" 
              vv
clus           LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  C7 MUTATED                            0                                 4
  C7 WILD-TYPE                          2                                35
              vv
clus           LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C7 MUTATED                                                   10
  C7 WILD-TYPE                                                104
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C7 MUTATED                                            0
  C7 WILD-TYPE                                          1
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C7 MUTATED                                               0
  C7 WILD-TYPE                                             2
              vv
clus           LUNG CLEAR CELL ADENOCARCINOMA
  C7 MUTATED                                0
  C7 WILD-TYPE                              2
              vv
clus           LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  C7 MUTATED                                    0                            0
  C7 WILD-TYPE                                  2                            2
              vv
clus           LUNG PAPILLARY ADENOCARCINOMA
  C7 MUTATED                               0
  C7 WILD-TYPE                             5
              vv
clus           LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C7 MUTATED                                               0
  C7 WILD-TYPE                                             1
              vv
clus           MUCINOUS (COLLOID) ADENOCARCINOMA
  C7 MUTATED                                   0
  C7 WILD-TYPE                                 2
D99V5, multiclass
              vv
clus           T1 T2 T3 T4
  C7 MUTATED    2 10  0  2
  C7 WILD-TYPE 39 98 14  6
D99V6, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  T1          2           39
  T2         10           98
  T3          0           14
  T4          2            6
              vv
clus           N0 N1 N2+N3
  C7 MUTATED    9  4     1
  C7 WILD-TYPE 86 33    34
D99V7, multiclass
       clus
vv      C7 MUTATED C7 WILD-TYPE
  N0             9           86
  N1             4           33
  N2+N3          1           34
              vv
clus            M0  M1  MX
  C7 MUTATED    11   1   2
  C7 WILD-TYPE 126   8  20
D99V8, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  M0         11          126
  M1          1            8
  MX          2           20
              vv
clus            I II III IV
  C7 MUTATED    9  2   2  1
  C7 WILD-TYPE 79 31  37  8
D99V9, multiclass
     clus
vv    C7 MUTATED C7 WILD-TYPE
  I            9           79
  II           2           31
  III          2           37
  IV           1            8
D99V10, binary
              cls
clus             0   1
  C7 MUTATED     0  14
  C7 WILD-TYPE  16 142
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      0   14
  C7 WILD-TYPE   16  142
     clus
vv    C7 MUTATED C7 WILD-TYPE
  NO           0           16
  YES         14          142
D99V11, continuous
              vv
clus           CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C7 MUTATED                                             6
  C7 WILD-TYPE                                          56
              vv
clus           CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C7 MUTATED                                        2              5
  C7 WILD-TYPE                                     44             23
              vv
clus           LIFELONG NON-SMOKER
  C7 MUTATED                     1
  C7 WILD-TYPE                  23
D99V12, multiclass
                                             clus
vv                                            C7 MUTATED C7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          6           56
  CURRENT REFORMED SMOKER FOR > 15 YEARS               2           44
  CURRENT SMOKER                                       5           23
  LIFELONG NON-SMOKER                                  1           23
D99V13, continuous
              vv
clus           R0 R1 R2 RX
  C7 MUTATED    9  0  0  1
  C7 WILD-TYPE 93  5  4  9
D99V14, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  R0          9           93
  R1          0            5
  R2          0            4
  RX          1            9

Clustering(100) Variable = PI15 MUTATION ANALYSIS
D100V1, survival
                sevent
clus2             0  1
  PI15 MUTATED    6  1
  PI15 WILD-TYPE 93 49
  PI15 MUTATED PI15 WILD-TYPE 
             7            142 
  PI15 MUTATED PI15 WILD-TYPE 
             1             49 
$`PI15 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-55-1594 TCGA-55-1595 TCGA-64-1678 TCGA-91-6828 
        9.96        26.01        38.73        48.62        39.09         1.22 
TCGA-91-6836 
        0.36 

$`PI15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 
       11.05        12.16         6.21        33.37        23.05        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        41.33         1.28         1.15 

  PI15 MUTATED PI15 WILD-TYPE 
          0.36           0.07 
  PI15 MUTATED PI15 WILD-TYPE 
         48.62          85.32 
  PI15 MUTATED PI15 WILD-TYPE 
         26.01          13.51 
[1] "0.4 - 48.6 (26.0)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
[1] "hr=" "2.9"
D100V2, continuous
D100V3, binary
                cls
clus              0  1
  PI15 MUTATED    4  3
  PI15 WILD-TYPE 89 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      4    3
  PI15 WILD-TYPE   89   76
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D100V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PI15 MUTATED                            0                                 2
  PI15 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PI15 MUTATED                                                    4
  PI15 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PI15 MUTATED                                            0
  PI15 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PI15 MUTATED                                               0
  PI15 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PI15 MUTATED                                1
  PI15 WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PI15 MUTATED                                    0
  PI15 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PI15 MUTATED                              0                             0
  PI15 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PI15 MUTATED                                               0
  PI15 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  PI15 MUTATED                                   0
  PI15 WILD-TYPE                                 2
D100V5, multiclass
                vv
clus              T1  T2  T3  T4
  PI15 MUTATED     2   4   0   1
  PI15 WILD-TYPE  39 104  14   7
D100V6, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  PI15 MUTATED    4  2     1
  PI15 WILD-TYPE 91 35    34
D100V7, multiclass
       clus
vv      PI15 MUTATED PI15 WILD-TYPE
  N0               4             91
  N1               2             35
  N2+N3            1             34
                vv
clus              M0  M1  MX
  PI15 MUTATED     5   0   2
  PI15 WILD-TYPE 132   9  20
D100V8, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
                vv
clus              I II III IV
  PI15 MUTATED    3  2   2  0
  PI15 WILD-TYPE 85 31  37  9
D100V9, multiclass
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  I              3             85
  II             2             31
  III            2             37
  IV             0              9
D100V10, binary
                cls
clus               0   1
  PI15 MUTATED     0   7
  PI15 WILD-TYPE  16 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      0    7
  PI15 WILD-TYPE   16  149
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  NO             0             16
  YES            7            149
D100V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PI15 MUTATED                                             2
  PI15 WILD-TYPE                                          60
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PI15 MUTATED                                        3              2
  PI15 WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  PI15 MUTATED                     0
  PI15 WILD-TYPE                  24
D100V12, multiclass
                                             clus
vv                                            PI15 MUTATED PI15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D100V13, continuous
                vv
clus             R0 R1 R2 RX
  PI15 MUTATED    4  0  0  0
  PI15 WILD-TYPE 98  5  4 10
D100V14, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  R0            4             98
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(101) Variable = NRXN1 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED   16  7
  NRXN1 WILD-TYPE 83 43
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             23             126 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              7              43 
$`NRXN1 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 
       38.07        19.92         9.96        47.05        29.95        25.02 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-49-4488 
       11.64        44.61        17.39         8.09         6.44        28.57 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-6590 TCGA-55-5899 TCGA-64-5774 
       43.20        15.02        12.13        42.31         2.86        83.84 
TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-91-6829 
       39.52         1.97        23.38        15.35        41.33 

$`NRXN1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
        3.98        14.01        37.02        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
        2.96        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 
       14.07        32.84         8.81        29.46        29.75        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           1.97            0.07 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          83.84           85.32 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          23.38           12.46 
[1] "2.0 - 83.8 (23.4)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
[1] "hr=" "1.7"
D101V2, continuous
D101V3, binary
                 cls
clus               0  1
  NRXN1 MUTATED   11 14
  NRXN1 WILD-TYPE 82 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     11   14
  NRXN1 WILD-TYPE   82   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE            11              82
  MALE              14              65
D101V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NRXN1 MUTATED                            0                                 7
  NRXN1 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NRXN1 MUTATED                                                   13
  NRXN1 WILD-TYPE                                                101
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NRXN1 MUTATED                                            0
  NRXN1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NRXN1 MUTATED                                               1
  NRXN1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NRXN1 MUTATED                                1
  NRXN1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NRXN1 MUTATED                                    1
  NRXN1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NRXN1 MUTATED                              0                             1
  NRXN1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NRXN1 MUTATED                                               0
  NRXN1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  NRXN1 MUTATED                                   1
  NRXN1 WILD-TYPE                                 1
D101V5, multiclass
                 vv
clus              T1 T2 T3 T4
  NRXN1 MUTATED    7 16  0  2
  NRXN1 WILD-TYPE 34 92 14  6
D101V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             7              34
  T2            16              92
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  NRXN1 MUTATED   15  7     3
  NRXN1 WILD-TYPE 80 30    32
D101V7, multiclass
       clus
vv      NRXN1 MUTATED NRXN1 WILD-TYPE
  N0               15              80
  N1                7              30
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  NRXN1 MUTATED    20   1   4
  NRXN1 WILD-TYPE 117   8  18
D101V8, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  M0            20             117
  M1             1               8
  MX             4              18
                 vv
clus               I II III IV
  NRXN1 MUTATED   16  4   4  1
  NRXN1 WILD-TYPE 72 29  35  8
D101V9, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I              16              72
  II              4              29
  III             4              35
  IV              1               8
D101V10, binary
                 cls
clus                0   1
  NRXN1 MUTATED     0  25
  NRXN1 WILD-TYPE  16 131
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      0   25
  NRXN1 WILD-TYPE   16  131
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  NO              0              16
  YES            25             131
D101V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NRXN1 MUTATED                                            13
  NRXN1 WILD-TYPE                                          49
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NRXN1 MUTATED                                        8              4
  NRXN1 WILD-TYPE                                     38             24
                 vv
clus              LIFELONG NON-SMOKER
  NRXN1 MUTATED                     0
  NRXN1 WILD-TYPE                  24
D101V12, multiclass
                                             clus
vv                                            NRXN1 MUTATED NRXN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D101V13, continuous
                 vv
clus              R0 R1 R2 RX
  NRXN1 MUTATED   19  0  0  2
  NRXN1 WILD-TYPE 83  5  4  8
D101V14, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  R0            19              83
  R1             0               5
  R2             0               4
  RX             2               8

Clustering(102) Variable = OR5D16 MUTATION ANALYSIS
D102V1, survival
                  sevent
clus2               0  1
  OR5D16 MUTATED    5  2
  OR5D16 WILD-TYPE 94 48
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              142 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               2               48 
$`OR5D16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-49-4494 TCGA-55-5899 TCGA-64-1676 
       19.92         9.96        26.01        35.54         2.86        56.81 
TCGA-91-6836 
        0.36 

$`OR5D16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  OR5D16 MUTATED OR5D16 WILD-TYPE 
            0.36             0.07 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           56.81            85.32 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           19.92            13.51 
[1] "0.4 - 56.8 (19.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
[1] "hr=" "1.3"
D102V2, continuous
D102V3, binary
                  cls
clus                0  1
  OR5D16 MUTATED    2  5
  OR5D16 WILD-TYPE 91 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      2    5
  OR5D16 WILD-TYPE   91   74
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  FEMALE              2               91
  MALE                5               74
D102V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5D16 MUTATED                            0                                 3
  OR5D16 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5D16 MUTATED                                                    4
  OR5D16 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5D16 MUTATED                                            0
  OR5D16 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5D16 MUTATED                                               0
  OR5D16 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR5D16 MUTATED                                0
  OR5D16 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5D16 MUTATED                                    0
  OR5D16 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5D16 MUTATED                              0                             0
  OR5D16 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5D16 MUTATED                                               0
  OR5D16 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5D16 MUTATED                                   0
  OR5D16 WILD-TYPE                                 2
D102V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR5D16 MUTATED     2   3   1   1
  OR5D16 WILD-TYPE  39 105  13   7
D102V6, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR5D16 MUTATED    3  3     1
  OR5D16 WILD-TYPE 92 34    34
D102V7, multiclass
       clus
vv      OR5D16 MUTATED OR5D16 WILD-TYPE
  N0                 3               92
  N1                 3               34
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR5D16 MUTATED     6   0   1
  OR5D16 WILD-TYPE 131   9  21
D102V8, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR5D16 MUTATED    4  1   2  0
  OR5D16 WILD-TYPE 84 32  37  9
D102V9, multiclass
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  I                4               84
  II               1               32
  III              2               37
  IV               0                9
D102V10, binary
                  cls
clus                 0   1
  OR5D16 MUTATED     0   7
  OR5D16 WILD-TYPE  16 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      0    7
  OR5D16 WILD-TYPE   16  149
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  NO               0               16
  YES              7              149
D102V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5D16 MUTATED                                             2
  OR5D16 WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5D16 MUTATED                                        2              3
  OR5D16 WILD-TYPE                                     44             25
                  vv
clus               LIFELONG NON-SMOKER
  OR5D16 MUTATED                     0
  OR5D16 WILD-TYPE                  24
D102V12, multiclass
                                             clus
vv                                            OR5D16 MUTATED OR5D16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D102V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR5D16 MUTATED    6  0  0  0
  OR5D16 WILD-TYPE 96  5  4 10
D102V14, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(103) Variable = LIPI MUTATION ANALYSIS
D103V1, survival
                sevent
clus2             0  1
  LIPI MUTATED    6  1
  LIPI WILD-TYPE 93 49
  LIPI MUTATED LIPI WILD-TYPE 
             7            142 
  LIPI MUTATED LIPI WILD-TYPE 
             1             49 
$`LIPI MUTATED`
TCGA-05-5423 TCGA-38-4626 TCGA-44-6774 TCGA-44-6777 TCGA-55-1594 TCGA-55-1596 
        4.96        85.32         5.42        32.45        38.73        45.17 
TCGA-67-3771 
        1.97 

$`LIPI WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
        6.21        33.37        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LIPI MUTATED LIPI WILD-TYPE 
          1.97           0.07 
  LIPI MUTATED LIPI WILD-TYPE 
         85.32          83.84 
  LIPI MUTATED LIPI WILD-TYPE 
         32.45          13.51 
[1] "2.0 - 85.3 (32.5)" "0.1 - 83.8 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
[1] "hr=" "4.7"
D103V2, continuous
D103V3, binary
                cls
clus              0  1
  LIPI MUTATED    4  3
  LIPI WILD-TYPE 89 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      4    3
  LIPI WILD-TYPE   89   76
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D103V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LIPI MUTATED                            0                                 1
  LIPI WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LIPI MUTATED                                                    6
  LIPI WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LIPI MUTATED                                            0
  LIPI WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LIPI MUTATED                                               0
  LIPI WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  LIPI MUTATED                                0
  LIPI WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  LIPI MUTATED                                    0
  LIPI WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LIPI MUTATED                              0                             0
  LIPI WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LIPI MUTATED                                               0
  LIPI WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  LIPI MUTATED                                   0
  LIPI WILD-TYPE                                 2
D103V5, multiclass
                vv
clus              T1  T2  T3  T4
  LIPI MUTATED     2   5   0   0
  LIPI WILD-TYPE  39 103  14   8
D103V6, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  T1            2             39
  T2            5            103
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  LIPI MUTATED    2  2     2
  LIPI WILD-TYPE 93 35    33
D103V7, multiclass
       clus
vv      LIPI MUTATED LIPI WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            2             33
                vv
clus              M0  M1  MX
  LIPI MUTATED     6   0   1
  LIPI WILD-TYPE 131   9  21
D103V8, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  M0            6            131
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  LIPI MUTATED    2  3   2  0
  LIPI WILD-TYPE 86 30  37  9
D103V9, multiclass
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  I              2             86
  II             3             30
  III            2             37
  IV             0              9
D103V10, binary
                cls
clus               0   1
  LIPI MUTATED     1   6
  LIPI WILD-TYPE  15 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      1    6
  LIPI WILD-TYPE   15  150
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  NO             1             15
  YES            6            150
D103V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LIPI MUTATED                                             2
  LIPI WILD-TYPE                                          60
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LIPI MUTATED                                        1              4
  LIPI WILD-TYPE                                     45             24
                vv
clus             LIFELONG NON-SMOKER
  LIPI MUTATED                     0
  LIPI WILD-TYPE                  24
D103V12, multiclass
                                             clus
vv                                            LIPI MUTATED LIPI WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D103V13, continuous
                vv
clus             R0 R1 R2 RX
  LIPI MUTATED    5  0  0  0
  LIPI WILD-TYPE 97  5  4 10
D103V14, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  R0            5             97
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(104) Variable = SEMA3A MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2               0  1
  SEMA3A MUTATED    6  3
  SEMA3A WILD-TYPE 93 47
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               9              140 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               3               47 
$`SEMA3A MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-44-2656 TCGA-44-6145 TCGA-49-6743 
       19.92         9.96         8.98        19.10         3.35        12.13 
TCGA-49-6745 TCGA-50-6594 TCGA-64-5781 
        4.93        12.16        39.52 

$`SEMA3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SEMA3A MUTATED SEMA3A WILD-TYPE 
            3.35             0.07 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           39.52            85.32 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           12.13            14.04 
[1] "3.4 - 39.5 (12.1)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
[1] "hr=" "1.7"
D104V2, continuous
D104V3, binary
                  cls
clus                0  1
  SEMA3A MUTATED    4  6
  SEMA3A WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      4    6
  SEMA3A WILD-TYPE   89   73
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D104V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SEMA3A MUTATED                            0                                 5
  SEMA3A WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SEMA3A MUTATED                                                    3
  SEMA3A WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SEMA3A MUTATED                                            0
  SEMA3A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SEMA3A MUTATED                                               0
  SEMA3A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SEMA3A MUTATED                                1
  SEMA3A WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SEMA3A MUTATED                                    0
  SEMA3A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SEMA3A MUTATED                              0                             1
  SEMA3A WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SEMA3A MUTATED                                               0
  SEMA3A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  SEMA3A MUTATED                                   0
  SEMA3A WILD-TYPE                                 2
D104V5, multiclass
                  vv
clus                T1  T2  T3  T4
  SEMA3A MUTATED     3   4   2   1
  SEMA3A WILD-TYPE  38 104  12   7
D104V6, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  T1              3               38
  T2              4              104
  T3              2               12
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  SEMA3A MUTATED    4  2     4
  SEMA3A WILD-TYPE 91 35    31
D104V7, multiclass
       clus
vv      SEMA3A MUTATED SEMA3A WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  SEMA3A MUTATED     8   0   2
  SEMA3A WILD-TYPE 129   9  20
D104V8, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  SEMA3A MUTATED    4  1   5  0
  SEMA3A WILD-TYPE 84 32  34  9
D104V9, multiclass
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  I                4               84
  II               1               32
  III              5               34
  IV               0                9
D104V10, binary
                  cls
clus                 0   1
  SEMA3A MUTATED     0  10
  SEMA3A WILD-TYPE  16 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      0   10
  SEMA3A WILD-TYPE   16  146
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  NO               0               16
  YES             10              146
D104V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SEMA3A MUTATED                                             7
  SEMA3A WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SEMA3A MUTATED                                        2              1
  SEMA3A WILD-TYPE                                     44             27
                  vv
clus               LIFELONG NON-SMOKER
  SEMA3A MUTATED                     0
  SEMA3A WILD-TYPE                  24
D104V12, multiclass
                                             clus
vv                                            SEMA3A MUTATED SEMA3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D104V13, continuous
                  vv
clus               R0 R1 R2 RX
  SEMA3A MUTATED    5  0  0  0
  SEMA3A WILD-TYPE 97  5  4 10
D104V14, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  R0              5               97
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(105) Variable = C1ORF49 MUTATION ANALYSIS
D105V1, survival
                   sevent
clus2                0  1
  C1ORF49 MUTATED    5  1
  C1ORF49 WILD-TYPE 94 49
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               143 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                49 
$`C1ORF49 MUTATED`
TCGA-05-4424 TCGA-35-5375 TCGA-55-6712 TCGA-64-1677 TCGA-64-5778 TCGA-91-6836 
       30.02         8.68         0.79        20.65        30.44         0.36 

$`C1ORF49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
             0.36              0.07 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            30.44             85.32 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
           14.665            13.870 
[1] "0.4 - 30.4 (14.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
[1] "hr=" "1.4"
D105V2, continuous
D105V3, binary
                   cls
clus                 0  1
  C1ORF49 MUTATED    2  4
  C1ORF49 WILD-TYPE 91 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      2    4
  C1ORF49 WILD-TYPE   91   75
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  FEMALE               2                91
  MALE                 4                75
D105V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C1ORF49 MUTATED                            0
  C1ORF49 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C1ORF49 MUTATED                                   1
  C1ORF49 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C1ORF49 MUTATED                                                    4
  C1ORF49 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C1ORF49 MUTATED                                            0
  C1ORF49 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C1ORF49 MUTATED                                               1
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C1ORF49 MUTATED                                0
  C1ORF49 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                                    0
  C1ORF49 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                              0                             0
  C1ORF49 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C1ORF49 MUTATED                                               0
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  C1ORF49 MUTATED                                   0
  C1ORF49 WILD-TYPE                                 2
D105V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  C1ORF49 MUTATED     0   5   1   0
  C1ORF49 WILD-TYPE  41 103  13   8
D105V6, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  T1               0                41
  T2               5               103
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  C1ORF49 MUTATED    3  1     2
  C1ORF49 WILD-TYPE 92 36    33
D105V7, multiclass
       clus
vv      C1ORF49 MUTATED C1ORF49 WILD-TYPE
  N0                  3                92
  N1                  1                36
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  C1ORF49 MUTATED     4   0   2
  C1ORF49 WILD-TYPE 133   9  20
D105V8, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               2                20
                   vv
clus                 I II III IV
  C1ORF49 MUTATED    2  1   2  0
  C1ORF49 WILD-TYPE 86 32  37  9
D105V9, multiclass
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D105V10, binary
                   cls
clus                  0   1
  C1ORF49 MUTATED     0   6
  C1ORF49 WILD-TYPE  16 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   16  150
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                16
  YES               6               150
D105V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C1ORF49 MUTATED                                             4
  C1ORF49 WILD-TYPE                                          58
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C1ORF49 MUTATED                                        0              2
  C1ORF49 WILD-TYPE                                     46             26
                   vv
clus                LIFELONG NON-SMOKER
  C1ORF49 MUTATED                     0
  C1ORF49 WILD-TYPE                  24
D105V12, multiclass
                                             clus
vv                                            C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D105V13, continuous
                   vv
clus                R0 R1 R2 RX
  C1ORF49 MUTATED    3  1  0  0
  C1ORF49 WILD-TYPE 99  4  4 10
D105V14, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  R0               3                99
  R1               1                 4
  R2               0                 4
  RX               0                10

Clustering(106) Variable = SLC35F1 MUTATION ANALYSIS
D106V1, survival
                   sevent
clus2                0  1
  SLC35F1 MUTATED    6  2
  SLC35F1 WILD-TYPE 93 48
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                8               141 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                2                48 
$`SLC35F1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-35-4122 TCGA-50-5066 
       19.92         9.96        24.03        25.02         7.36         9.76 
TCGA-55-5899 TCGA-91-6836 
        2.86         0.36 

$`SLC35F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
        4.96         2.96         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             0.36              0.07 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
            25.02             85.32 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             9.86             14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
[1] "hr=" "1.6"
D106V2, continuous
D106V3, binary
                   cls
clus                 0  1
  SLC35F1 MUTATED    1  8
  SLC35F1 WILD-TYPE 92 71
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      1    8
  SLC35F1 WILD-TYPE   92   71
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  FEMALE               1                92
  MALE                 8                71
D106V4, continuous
[1] "Remove cluster labels:" "SLC35F1 MUTATED"       
clus
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                1                11 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLC35F1 MUTATED                            0
  SLC35F1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLC35F1 MUTATED                                   6
  SLC35F1 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC35F1 MUTATED                                                    3
  SLC35F1 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLC35F1 MUTATED                                            0
  SLC35F1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLC35F1 MUTATED                                               0
  SLC35F1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLC35F1 MUTATED                                0
  SLC35F1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLC35F1 MUTATED                                    0
  SLC35F1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLC35F1 MUTATED                              0                             0
  SLC35F1 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLC35F1 MUTATED                                               0
  SLC35F1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  SLC35F1 MUTATED                                   0
  SLC35F1 WILD-TYPE                                 2
D106V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  SLC35F1 MUTATED     2   6   0   1
  SLC35F1 WILD-TYPE  39 102  14   7
D106V6, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  T1               2                39
  T2               6               102
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  SLC35F1 MUTATED    5  4     0
  SLC35F1 WILD-TYPE 90 33    35
D106V7, multiclass
       clus
vv      SLC35F1 MUTATED SLC35F1 WILD-TYPE
  N0                  5                90
  N1                  4                33
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  SLC35F1 MUTATED     8   0   1
  SLC35F1 WILD-TYPE 129   9  21
D106V8, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  M0               8               129
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  SLC35F1 MUTATED    6  2   1  0
  SLC35F1 WILD-TYPE 82 31  38  9
D106V9, multiclass
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  I                 6                82
  II                2                31
  III               1                38
  IV                0                 9
D106V10, binary
                   cls
clus                  0   1
  SLC35F1 MUTATED     0   9
  SLC35F1 WILD-TYPE  16 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      0    9
  SLC35F1 WILD-TYPE   16  147
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  NO                0                16
  YES               9               147
D106V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC35F1 MUTATED                                             2
  SLC35F1 WILD-TYPE                                          60
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC35F1 MUTATED                                        2              4
  SLC35F1 WILD-TYPE                                     44             24
                   vv
clus                LIFELONG NON-SMOKER
  SLC35F1 MUTATED                     1
  SLC35F1 WILD-TYPE                  23
D106V12, multiclass
                                             clus
vv                                            SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       1                23
D106V13, continuous
                   vv
clus                R0 R1 R2 RX
  SLC35F1 MUTATED    8  0  0  0
  SLC35F1 WILD-TYPE 94  5  4 10
D106V14, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  R0               8                94
  R1               0                 5
  R2               0                 4
  RX               0                10

Clustering(107) Variable = PYHIN1 MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    2  3
  PYHIN1 WILD-TYPE 97 47
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               5              144 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               47 
$`PYHIN1 MUTATED`
TCGA-05-4397 TCGA-38-4626 TCGA-64-5781 TCGA-73-4677 TCGA-91-6829 
       24.03        85.32        39.52         1.25        41.33 

$`PYHIN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.32         4.01         1.22         1.28         1.15         0.36 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            1.25             0.07 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           85.32            83.84 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           39.52            13.15 
[1] "1.2 - 85.3 (39.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
[1] "hr=" "1.3"
D107V2, continuous
D107V3, binary
                  cls
clus                0  1
  PYHIN1 MUTATED    3  4
  PYHIN1 WILD-TYPE 90 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      3    4
  PYHIN1 WILD-TYPE   90   75
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D107V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PYHIN1 MUTATED                            0                                 2
  PYHIN1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PYHIN1 MUTATED                                                    3
  PYHIN1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PYHIN1 MUTATED                                            0
  PYHIN1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PYHIN1 MUTATED                                               1
  PYHIN1 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PYHIN1 MUTATED                                0
  PYHIN1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PYHIN1 MUTATED                                    0
  PYHIN1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PYHIN1 MUTATED                              0                             0
  PYHIN1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PYHIN1 MUTATED                                               1
  PYHIN1 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  PYHIN1 MUTATED                                   0
  PYHIN1 WILD-TYPE                                 2
D107V5, multiclass
                  vv
clus                T1  T2  T3  T4
  PYHIN1 MUTATED     0   6   1   0
  PYHIN1 WILD-TYPE  41 102  13   8
D107V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              0               41
  T2              6              102
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  PYHIN1 MUTATED    6  1     0
  PYHIN1 WILD-TYPE 89 36    35
D107V7, multiclass
       clus
vv      PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  PYHIN1 MUTATED     5   0   2
  PYHIN1 WILD-TYPE 132   9  20
D107V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  PYHIN1 MUTATED    4  3   0  0
  PYHIN1 WILD-TYPE 84 30  39  9
D107V9, multiclass
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                4               84
  II               3               30
  III              0               39
  IV               0                9
D107V10, binary
                  cls
clus                 0   1
  PYHIN1 MUTATED     0   7
  PYHIN1 WILD-TYPE  16 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0    7
  PYHIN1 WILD-TYPE   16  149
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0               16
  YES              7              149
D107V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PYHIN1 MUTATED                                             3
  PYHIN1 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PYHIN1 MUTATED                                        1              3
  PYHIN1 WILD-TYPE                                     45             25
                  vv
clus               LIFELONG NON-SMOKER
  PYHIN1 MUTATED                     0
  PYHIN1 WILD-TYPE                  24
D107V12, multiclass
                                             clus
vv                                            PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D107V13, continuous
                  vv
clus               R0 R1 R2 RX
  PYHIN1 MUTATED    6  0  0  0
  PYHIN1 WILD-TYPE 96  5  4 10
D107V14, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(108) Variable = ANKRD7 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  ANKRD7 MUTATED    3  3
  ANKRD7 WILD-TYPE 96 47
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              143 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               3               47 
$`ANKRD7 MUTATED`
TCGA-05-4424 TCGA-44-3396 TCGA-50-6592 TCGA-73-4658 TCGA-73-4670 TCGA-91-6829 
       30.02        10.22        25.51        52.57         0.46        41.33 

$`ANKRD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
            0.46             0.07 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
           52.57            85.32 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
          27.765           13.150 
[1] "0.5 - 52.6 (27.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
[1] "hr=" "1"  
D108V2, continuous
D108V3, binary
                  cls
clus                0  1
  ANKRD7 MUTATED    4  2
  ANKRD7 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      4    2
  ANKRD7 WILD-TYPE   89   77
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D108V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANKRD7 MUTATED                            0                                 1
  ANKRD7 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANKRD7 MUTATED                                                    4
  ANKRD7 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANKRD7 MUTATED                                            0
  ANKRD7 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANKRD7 MUTATED                                               1
  ANKRD7 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ANKRD7 MUTATED                                0
  ANKRD7 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ANKRD7 MUTATED                                    0
  ANKRD7 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANKRD7 MUTATED                              0                             0
  ANKRD7 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANKRD7 MUTATED                                               0
  ANKRD7 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  ANKRD7 MUTATED                                   0
  ANKRD7 WILD-TYPE                                 2
D108V5, multiclass
                  vv
clus                T1  T2  T3  T4
  ANKRD7 MUTATED     0   5   1   0
  ANKRD7 WILD-TYPE  41 103  13   8
D108V6, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ANKRD7 MUTATED    5  0     1
  ANKRD7 WILD-TYPE 90 37    34
D108V7, multiclass
       clus
vv      ANKRD7 MUTATED ANKRD7 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ANKRD7 MUTATED     4   1   1
  ANKRD7 WILD-TYPE 133   8  21
D108V8, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  ANKRD7 MUTATED    3  1   1  1
  ANKRD7 WILD-TYPE 85 32  38  8
D108V9, multiclass
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  I                3               85
  II               1               32
  III              1               38
  IV               1                8
D108V10, binary
                  cls
clus                 0   1
  ANKRD7 MUTATED     0   6
  ANKRD7 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      0    6
  ANKRD7 WILD-TYPE   16  150
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  NO               0               16
  YES              6              150
D108V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ANKRD7 MUTATED                                             4
  ANKRD7 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ANKRD7 MUTATED                                        1              1
  ANKRD7 WILD-TYPE                                     45             27
                  vv
clus               LIFELONG NON-SMOKER
  ANKRD7 MUTATED                     0
  ANKRD7 WILD-TYPE                  24
D108V12, multiclass
                                             clus
vv                                            ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D108V13, continuous
                  vv
clus               R0 R1 R2 RX
  ANKRD7 MUTATED    3  1  0  0
  ANKRD7 WILD-TYPE 99  4  4 10
D108V14, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  R0              3               99
  R1              1                4
  R2              0                4
  RX              0               10

Clustering(109) Variable = OLAH MUTATION ANALYSIS
D109V1, survival
                sevent
clus2             0  1
  OLAH MUTATED    5  1
  OLAH WILD-TYPE 94 49
  OLAH MUTATED OLAH WILD-TYPE 
             6            143 
  OLAH MUTATED OLAH WILD-TYPE 
             1             49 
$`OLAH MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-55-5899 TCGA-64-1678 TCGA-64-5779 TCGA-67-3771 
       37.02         9.96         2.86        39.09        16.67         1.97 

$`OLAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       20.65        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OLAH MUTATED OLAH WILD-TYPE 
          1.97           0.07 
  OLAH MUTATED OLAH WILD-TYPE 
         39.09          85.32 
  OLAH MUTATED OLAH WILD-TYPE 
        13.315         13.870 
[1] "2.0 - 39.1 (13.3)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
[1] "hr=" "1.8"
D109V2, continuous
D109V3, binary
                cls
clus              0  1
  OLAH MUTATED    3  4
  OLAH WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      3    4
  OLAH WILD-TYPE   90   75
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D109V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OLAH MUTATED                            1                                 3
  OLAH WILD-TYPE                          1                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OLAH MUTATED                                                    3
  OLAH WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OLAH MUTATED                                            0
  OLAH WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  OLAH MUTATED                                0
  OLAH WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  OLAH MUTATED                                    0
  OLAH WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OLAH MUTATED                              0                             0
  OLAH WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  OLAH MUTATED                                   0
  OLAH WILD-TYPE                                 2
D109V5, multiclass
                vv
clus              T1  T2  T3  T4
  OLAH MUTATED     2   3   0   2
  OLAH WILD-TYPE  39 105  14   6
D109V6, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  T1            2             39
  T2            3            105
  T3            0             14
  T4            2              6
                vv
clus             N0 N1 N2+N3
  OLAH MUTATED    3  2     2
  OLAH WILD-TYPE 92 35    33
D109V7, multiclass
       clus
vv      OLAH MUTATED OLAH WILD-TYPE
  N0               3             92
  N1               2             35
  N2+N3            2             33
                vv
clus              M0  M1  MX
  OLAH MUTATED     7   0   0
  OLAH WILD-TYPE 130   9  22
D109V8, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  M0            7            130
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  OLAH MUTATED    3  1   3  0
  OLAH WILD-TYPE 85 32  36  9
D109V9, multiclass
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  I              3             85
  II             1             32
  III            3             36
  IV             0              9
D109V10, binary
                cls
clus               0   1
  OLAH MUTATED     0   7
  OLAH WILD-TYPE  16 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      0    7
  OLAH WILD-TYPE   16  149
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             0             16
  YES            7            149
D109V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OLAH MUTATED                                             3
  OLAH WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OLAH MUTATED                                        2              1
  OLAH WILD-TYPE                                     44             27
                vv
clus             LIFELONG NON-SMOKER
  OLAH MUTATED                     1
  OLAH WILD-TYPE                  23
D109V12, multiclass
                                             clus
vv                                            OLAH MUTATED OLAH WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1             23
D109V13, continuous
                vv
clus             R0 R1 R2 RX
  OLAH MUTATED    7  0  0  0
  OLAH WILD-TYPE 95  5  4 10
D109V14, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  R0            7             95
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(110) Variable = TMEM195 MUTATION ANALYSIS
D110V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    6  4
  TMEM195 WILD-TYPE 93 46
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               10               139 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                4                46 
$`TMEM195 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-35-5375 TCGA-38-4626 TCGA-50-5935 TCGA-64-1676 
       19.92        24.03         8.68        85.32        21.47        56.81 
TCGA-64-5781 TCGA-67-3770 TCGA-73-4677 TCGA-91-6829 
       39.52         0.99         1.25        41.33 

$`TMEM195 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 
       83.84         0.10        30.44        16.67         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         4.01         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.99              0.07 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            85.32             83.84 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            22.75             13.15 
[1] "1.0 - 85.3 (22.8)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
[1] "hr=" "1.5"
D110V2, continuous
D110V3, binary
                   cls
clus                 0  1
  TMEM195 MUTATED    4  7
  TMEM195 WILD-TYPE 89 72
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      4    7
  TMEM195 WILD-TYPE   89   72
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               4                89
  MALE                 7                72
D110V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  TMEM195 MUTATED                            0
  TMEM195 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  TMEM195 MUTATED                                   4
  TMEM195 WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMEM195 MUTATED                                                    6
  TMEM195 WILD-TYPE                                                108
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TMEM195 MUTATED                                            0
  TMEM195 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TMEM195 MUTATED                                               1
  TMEM195 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  TMEM195 MUTATED                                0
  TMEM195 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  TMEM195 MUTATED                                    0
  TMEM195 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TMEM195 MUTATED                              0                             0
  TMEM195 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TMEM195 MUTATED                                               0
  TMEM195 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  TMEM195 MUTATED                                   0
  TMEM195 WILD-TYPE                                 2
D110V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  TMEM195 MUTATED     3   8   0   0
  TMEM195 WILD-TYPE  38 100  14   8
D110V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               3                38
  T2               8               100
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  TMEM195 MUTATED    9  1     1
  TMEM195 WILD-TYPE 86 36    34
D110V7, multiclass
       clus
vv      TMEM195 MUTATED TMEM195 WILD-TYPE
  N0                  9                86
  N1                  1                36
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  TMEM195 MUTATED    10   0   1
  TMEM195 WILD-TYPE 127   9  21
D110V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  TMEM195 MUTATED    8  2   1  0
  TMEM195 WILD-TYPE 80 31  38  9
D110V9, multiclass
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  I                 8                80
  II                2                31
  III               1                38
  IV                0                 9
D110V10, binary
                   cls
clus                  0   1
  TMEM195 MUTATED     1  10
  TMEM195 WILD-TYPE  15 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      1   10
  TMEM195 WILD-TYPE   15  146
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                1                15
  YES              10               146
D110V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMEM195 MUTATED                                             5
  TMEM195 WILD-TYPE                                          57
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMEM195 MUTATED                                        2              3
  TMEM195 WILD-TYPE                                     44             25
                   vv
clus                LIFELONG NON-SMOKER
  TMEM195 MUTATED                     0
  TMEM195 WILD-TYPE                  24
D110V12, multiclass
                                             clus
vv                                            TMEM195 MUTATED TMEM195 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D110V13, continuous
                   vv
clus                R0 R1 R2 RX
  TMEM195 MUTATED    8  0  0  1
  TMEM195 WILD-TYPE 94  5  4  9
D110V14, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  R0               8                94
  R1               0                 5
  R2               0                 4
  RX               1                 9

Clustering(111) Variable = KRTAP11-1 MUTATION ANALYSIS
D111V1, survival
                     sevent
clus2                  0  1
  KRTAP11-1 MUTATED    4  1
  KRTAP11-1 WILD-TYPE 95 49
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  5                 144 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  1                  49 
$`KRTAP11-1 MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4405 TCGA-44-6776 TCGA-50-6593 
       38.07        47.05        20.05        63.72        11.05 

$`KRTAP11-1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              11.05                0.07 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              63.72               85.32 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              38.07               13.15 
[1] "11.1 - 63.7 (38.1)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
[1] "hr=" "3.4"
D111V2, continuous
D111V3, binary
                     cls
clus                   0  1
  KRTAP11-1 MUTATED    5  1
  KRTAP11-1 WILD-TYPE 88 78
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      5    1
  KRTAP11-1 WILD-TYPE   88   78
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  FEMALE                 5                  88
  MALE                   1                  78
D111V4, continuous
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  KRTAP11-1 MUTATED                            0
  KRTAP11-1 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP11-1 MUTATED                                   3
  KRTAP11-1 WILD-TYPE                                36
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP11-1 MUTATED                                                    3
  KRTAP11-1 WILD-TYPE                                                111
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP11-1 MUTATED                                            0
  KRTAP11-1 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP11-1 MUTATED                                               0
  KRTAP11-1 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP11-1 MUTATED                                0
  KRTAP11-1 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP11-1 MUTATED                                    0
  KRTAP11-1 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  KRTAP11-1 MUTATED                              0
  KRTAP11-1 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  KRTAP11-1 MUTATED                               0
  KRTAP11-1 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP11-1 MUTATED                                               0
  KRTAP11-1 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) ADENOCARCINOMA
  KRTAP11-1 MUTATED                                   0
  KRTAP11-1 WILD-TYPE                                 2
D111V5, multiclass
                     vv
clus                   T1  T2  T3  T4
  KRTAP11-1 MUTATED     2   2   1   1
  KRTAP11-1 WILD-TYPE  39 106  13   7
D111V6, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 1                  13
  T4                 1                   7
                     vv
clus                  N0 N1 N2+N3
  KRTAP11-1 MUTATED    4  0     2
  KRTAP11-1 WILD-TYPE 91 37    33
D111V7, multiclass
       clus
vv      KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  N0                    4                  91
  N1                    0                  37
  N2+N3                 2                  33
                     vv
clus                   M0  M1  MX
  KRTAP11-1 MUTATED     4   0   2
  KRTAP11-1 WILD-TYPE 133   9  20
D111V8, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 2                  20
                     vv
clus                   I II III IV
  KRTAP11-1 MUTATED    3  1   2  0
  KRTAP11-1 WILD-TYPE 85 32  37  9
D111V9, multiclass
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D111V10, binary
                     cls
clus                    0   1
  KRTAP11-1 MUTATED     0   6
  KRTAP11-1 WILD-TYPE  16 150
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      0    6
  KRTAP11-1 WILD-TYPE   16  150
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  NO                  0                  16
  YES                 6                 150
D111V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRTAP11-1 MUTATED                                             3
  KRTAP11-1 WILD-TYPE                                          59
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRTAP11-1 MUTATED                                        1              2
  KRTAP11-1 WILD-TYPE                                     45             26
                     vv
clus                  LIFELONG NON-SMOKER
  KRTAP11-1 MUTATED                     0
  KRTAP11-1 WILD-TYPE                  24
D111V12, multiclass
                                             clus
vv                                            KRTAP11-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      1
  CURRENT SMOKER                                              2
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP11-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       45
  CURRENT SMOKER                                               26
  LIFELONG NON-SMOKER                                          24
D111V13, continuous
[1] "Remove cluster labels:" "KRTAP11-1 MUTATED"     
clus
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4410          TCGA-05-4415          TCGA-05-4417 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4427          TCGA-05-4433 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5428          TCGA-35-4122          TCGA-35-4123 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2662          TCGA-44-2666 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5645 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6147 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
                     vv
clus                  R0 R1 R2 RX
  KRTAP11-1 MUTATED    4  0  0  0
  KRTAP11-1 WILD-TYPE 98  5  4 10
D111V14, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  R0                 4                  98
  R1                 0                   5
  R2                 0                   4
  RX                 0                  10

Clustering(112) Variable = OR6N2 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  OR6N2 MUTATED    5  2
  OR6N2 WILD-TYPE 94 48
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             142 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              2              48 
$`OR6N2 MUTATED`
TCGA-05-5425 TCGA-35-4123 TCGA-49-4505 TCGA-49-6743 TCGA-50-6594 TCGA-64-5774 
        2.96         5.95        14.07        12.13        12.16        83.84 
TCGA-91-6831 
        1.28 

$`OR6N2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  OR6N2 MUTATED OR6N2 WILD-TYPE 
           1.28            0.07 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          83.84           85.32 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          12.13           14.47 
[1] "1.3 - 83.8 (12.1)" "0.1 - 85.3 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
[1] "hr=" "1.4"
D112V2, continuous
D112V3, binary
                 cls
clus               0  1
  OR6N2 MUTATED    3  4
  OR6N2 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      3    4
  OR6N2 WILD-TYPE   90   75
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D112V4, continuous
[1] "Remove cluster labels:" "OR6N2 MUTATED"         
clus
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR6N2 MUTATED                            0                                 1
  OR6N2 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6N2 MUTATED                                                    5
  OR6N2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR6N2 MUTATED                                            0
  OR6N2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR6N2 MUTATED                                               0
  OR6N2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR6N2 MUTATED                                1
  OR6N2 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR6N2 MUTATED                                    0
  OR6N2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR6N2 MUTATED                              0                             0
  OR6N2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR6N2 MUTATED                                               0
  OR6N2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR6N2 MUTATED                                   0
  OR6N2 WILD-TYPE                                 2
D112V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR6N2 MUTATED     2   4   1   0
  OR6N2 WILD-TYPE  39 104  13   8
D112V6, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR6N2 MUTATED    3  2     2
  OR6N2 WILD-TYPE 92 35    33
D112V7, multiclass
       clus
vv      OR6N2 MUTATED OR6N2 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  OR6N2 MUTATED     5   0   2
  OR6N2 WILD-TYPE 132   9  20
D112V8, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             2              20
                 vv
clus               I II III IV
  OR6N2 MUTATED    3  2   2  0
  OR6N2 WILD-TYPE 85 31  37  9
D112V9, multiclass
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  I               3              85
  II              2              31
  III             2              37
  IV              0               9
D112V10, binary
                 cls
clus                0   1
  OR6N2 MUTATED     0   7
  OR6N2 WILD-TYPE  16 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      0    7
  OR6N2 WILD-TYPE   16  149
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  NO              0              16
  YES             7             149
D112V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR6N2 MUTATED                                             5
  OR6N2 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR6N2 MUTATED                                        1              1
  OR6N2 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  OR6N2 MUTATED                     0
  OR6N2 WILD-TYPE                  24
D112V12, multiclass
                                             clus
vv                                            OR6N2 MUTATED OR6N2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D112V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR6N2 MUTATED    4  0  0  0
  OR6N2 WILD-TYPE 98  5  4 10
D112V14, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(113) Variable = PRIM2 MUTATION ANALYSIS
D113V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    6  4
  PRIM2 WILD-TYPE 93 46
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             139 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              4              46 
$`PRIM2 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4415 TCGA-05-4420 TCGA-05-4427 TCGA-44-6144 
       19.92        24.03         2.96        29.95        26.01         0.30 
TCGA-50-5072 TCGA-50-6593 TCGA-55-1596 TCGA-64-5775 
        8.05        11.05        45.17         0.10 

$`PRIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02        20.05        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.10            0.07 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          45.17           85.32 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
         15.485          13.870 
[1] "0.1 - 45.2 (15.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
[1] "hr=" "1.6"
D113V2, continuous
D113V3, binary
                 cls
clus               0  1
  PRIM2 MUTATED    2  8
  PRIM2 WILD-TYPE 91 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      2    8
  PRIM2 WILD-TYPE   91   71
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             2              91
  MALE               8              71
D113V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PRIM2 MUTATED                            0                                 6
  PRIM2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRIM2 MUTATED                                                    4
  PRIM2 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PRIM2 MUTATED                                            0
  PRIM2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PRIM2 MUTATED                                               0
  PRIM2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  PRIM2 MUTATED                                0
  PRIM2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  PRIM2 MUTATED                                    0
  PRIM2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PRIM2 MUTATED                              0                             0
  PRIM2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PRIM2 MUTATED                                               0
  PRIM2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  PRIM2 MUTATED                                   0
  PRIM2 WILD-TYPE                                 2
D113V5, multiclass
                 vv
clus               T1  T2  T3  T4
  PRIM2 MUTATED     2   6   0   2
  PRIM2 WILD-TYPE  39 102  14   6
D113V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  PRIM2 MUTATED    4  3     3
  PRIM2 WILD-TYPE 91 34    32
D113V7, multiclass
       clus
vv      PRIM2 MUTATED PRIM2 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  PRIM2 MUTATED    10   0   0
  PRIM2 WILD-TYPE 127   9  22
D113V8, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  PRIM2 MUTATED    3  3   4  0
  PRIM2 WILD-TYPE 85 30  35  9
D113V9, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  I               3              85
  II              3              30
  III             4              35
  IV              0               9
D113V10, binary
                 cls
clus                0   1
  PRIM2 MUTATED     1   9
  PRIM2 WILD-TYPE  15 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      1    9
  PRIM2 WILD-TYPE   15  147
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              1              15
  YES             9             147
D113V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRIM2 MUTATED                                             4
  PRIM2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRIM2 MUTATED                                        1              5
  PRIM2 WILD-TYPE                                     45             23
                 vv
clus              LIFELONG NON-SMOKER
  PRIM2 MUTATED                     0
  PRIM2 WILD-TYPE                  24
D113V12, multiclass
                                             clus
vv                                            PRIM2 MUTATED PRIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     0              24
D113V13, continuous
                 vv
clus              R0 R1 R2 RX
  PRIM2 MUTATED    7  0  0  1
  PRIM2 WILD-TYPE 95  5  4  9
D113V14, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  R0             7              95
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(114) Variable = C14ORF177 MUTATION ANALYSIS
D114V1, survival
                     sevent
clus2                  0  1
  C14ORF177 MUTATED    4  1
  C14ORF177 WILD-TYPE 95 49
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 144 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                  49 
$`C14ORF177 MUTATED`
TCGA-05-4382 TCGA-05-4432 TCGA-44-2665 TCGA-50-6590 TCGA-64-1678 
       19.92        25.02        13.15        42.31        39.09 

$`C14ORF177 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              13.15                0.07 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              42.31               85.32 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              25.02               13.07 
[1] "13.2 - 42.3 (25.0)" "0.1 - 85.3 (13.1)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
[1] "hr=" "2.3"
D114V2, continuous
D114V3, binary
                     cls
clus                   0  1
  C14ORF177 MUTATED    3  2
  C14ORF177 WILD-TYPE 90 77
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      3    2
  C14ORF177 WILD-TYPE   90   77
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  FEMALE                 3                  90
  MALE                   2                  77
D114V4, continuous
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  C14ORF177 MUTATED                            0
  C14ORF177 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  C14ORF177 MUTATED                                   2
  C14ORF177 WILD-TYPE                                37
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C14ORF177 MUTATED                                                    3
  C14ORF177 WILD-TYPE                                                111
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C14ORF177 MUTATED                                            0
  C14ORF177 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C14ORF177 MUTATED                                               0
  C14ORF177 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  C14ORF177 MUTATED                                0
  C14ORF177 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  C14ORF177 MUTATED                                    0
  C14ORF177 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  C14ORF177 MUTATED                              0
  C14ORF177 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  C14ORF177 MUTATED                               0
  C14ORF177 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C14ORF177 MUTATED                                               0
  C14ORF177 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) ADENOCARCINOMA
  C14ORF177 MUTATED                                   0
  C14ORF177 WILD-TYPE                                 2
D114V5, multiclass
                     vv
clus                   T1  T2  T3  T4
  C14ORF177 MUTATED     0   5   0   0
  C14ORF177 WILD-TYPE  41 103  14   8
D114V6, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  T1                 0                  41
  T2                 5                 103
  T3                 0                  14
  T4                 0                   8
                     vv
clus                  N0 N1 N2+N3
  C14ORF177 MUTATED    3  2     0
  C14ORF177 WILD-TYPE 92 35    35
D114V7, multiclass
       clus
vv      C14ORF177 MUTATED C14ORF177 WILD-TYPE
  N0                    3                  92
  N1                    2                  35
  N2+N3                 0                  35
                     vv
clus                   M0  M1  MX
  C14ORF177 MUTATED     5   0   0
  C14ORF177 WILD-TYPE 132   9  22
D114V8, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
                     vv
clus                   I II III IV
  C14ORF177 MUTATED    2  3   0  0
  C14ORF177 WILD-TYPE 86 30  39  9
D114V9, multiclass
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  I                   2                  86
  II                  3                  30
  III                 0                  39
  IV                  0                   9
D114V10, binary
                     cls
clus                    0   1
  C14ORF177 MUTATED     0   5
  C14ORF177 WILD-TYPE  16 151
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      0    5
  C14ORF177 WILD-TYPE   16  151
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D114V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C14ORF177 MUTATED                                             2
  C14ORF177 WILD-TYPE                                          60
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C14ORF177 MUTATED                                        1              1
  C14ORF177 WILD-TYPE                                     45             27
                     vv
clus                  LIFELONG NON-SMOKER
  C14ORF177 MUTATED                     1
  C14ORF177 WILD-TYPE                  23
D114V12, multiclass
                                             clus
vv                                            C14ORF177 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      1
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         1
                                             clus
vv                                            C14ORF177 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       45
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                          23
D114V13, continuous
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                  67 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4626          TCGA-44-2655          TCGA-44-2656 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-4112 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4505          TCGA-55-1592 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6642          TCGA-55-6712 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1680          TCGA-64-5774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5781          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-91-6829 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6836 
"C14ORF177 WILD-TYPE" 
                     vv
clus                  R0 R1 R2 RX
  C14ORF177 MUTATED    4  0  0  0
  C14ORF177 WILD-TYPE 98  5  4 10
D114V14, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  R0                 4                  98
  R1                 0                   5
  R2                 0                   4
  RX                 0                  10

Clustering(115) Variable = FAM48B1 MUTATION ANALYSIS
D115V1, survival
                   sevent
clus2                0  1
  FAM48B1 MUTATED    6  3
  FAM48B1 WILD-TYPE 93 47
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                9               140 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                3                47 
$`FAM48B1 MUTATED`
TCGA-05-4427 TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 
       26.01         5.95        49.02        11.64        13.15         3.39 
TCGA-50-5931 TCGA-64-1678 TCGA-73-4666 
        8.78        39.09        20.28 

$`FAM48B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       19.10        17.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
             3.39              0.07 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            49.02             85.32 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            13.15             13.94 
[1] "3.4 - 49.0 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
[1] "hr=" "1.1"
D115V2, continuous
D115V3, binary
                   cls
clus                 0  1
  FAM48B1 MUTATED    8  2
  FAM48B1 WILD-TYPE 85 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      8    2
  FAM48B1 WILD-TYPE   85   77
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  FEMALE               8                85
  MALE                 2                77
D115V4, continuous
[1] "Remove cluster labels:" "FAM48B1 MUTATED"       
clus
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  FAM48B1 MUTATED                            0
  FAM48B1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM48B1 MUTATED                                   1
  FAM48B1 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM48B1 MUTATED                                                    9
  FAM48B1 WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM48B1 MUTATED                                            0
  FAM48B1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  FAM48B1 MUTATED                                0
  FAM48B1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                                    0
  FAM48B1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                              0                             0
  FAM48B1 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  FAM48B1 MUTATED                                   0
  FAM48B1 WILD-TYPE                                 2
D115V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  FAM48B1 MUTATED     3   7   0   0
  FAM48B1 WILD-TYPE  38 101  14   8
D115V6, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  T1               3                38
  T2               7               101
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  FAM48B1 MUTATED    7  2     0
  FAM48B1 WILD-TYPE 88 35    35
D115V7, multiclass
       clus
vv      FAM48B1 MUTATED FAM48B1 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  FAM48B1 MUTATED     9   1   0
  FAM48B1 WILD-TYPE 128   8  22
D115V8, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               0                22
                   vv
clus                 I II III IV
  FAM48B1 MUTATED    6  3   0  1
  FAM48B1 WILD-TYPE 82 30  39  8
D115V9, multiclass
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  I                 6                82
  II                3                30
  III               0                39
  IV                1                 8
D115V10, binary
                   cls
clus                  0   1
  FAM48B1 MUTATED     1   9
  FAM48B1 WILD-TYPE  15 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      1    9
  FAM48B1 WILD-TYPE   15  147
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                1                15
  YES               9               147
D115V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM48B1 MUTATED                                             5
  FAM48B1 WILD-TYPE                                          57
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM48B1 MUTATED                                        2              0
  FAM48B1 WILD-TYPE                                     44             28
                   vv
clus                LIFELONG NON-SMOKER
  FAM48B1 MUTATED                     2
  FAM48B1 WILD-TYPE                  22
D115V12, multiclass
                                             clus
vv                                            FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       2                22
D115V13, continuous
                   vv
clus                R0 R1 R2 RX
  FAM48B1 MUTATED    9  0  0  0
  FAM48B1 WILD-TYPE 93  5  4 10
D115V14, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  R0               9                93
  R1               0                 5
  R2               0                 4
  RX               0                10

Clustering(116) Variable = KCNS2 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2              0  1
  KCNS2 MUTATED    0  4
  KCNS2 WILD-TYPE 99 46
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4             145 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4              46 
$`KCNS2 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-49-4487 TCGA-50-5933 
        9.96        28.37        28.11        77.88 

$`KCNS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KCNS2 MUTATED KCNS2 WILD-TYPE 
           9.96            0.07 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          77.88           85.32 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          28.24           13.15 
[1] "10.0 - 77.9 (28.2)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
[1] "hr=" "1.4"
D116V2, continuous
D116V3, binary
                 cls
clus               0  1
  KCNS2 MUTATED    2  5
  KCNS2 WILD-TYPE 91 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      2    5
  KCNS2 WILD-TYPE   91   74
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  FEMALE             2              91
  MALE               5              74
D116V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KCNS2 MUTATED                            0                                 2
  KCNS2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KCNS2 MUTATED                                                    4
  KCNS2 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KCNS2 MUTATED                                            0
  KCNS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KCNS2 MUTATED                                               0
  KCNS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KCNS2 MUTATED                                0
  KCNS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KCNS2 MUTATED                                    0
  KCNS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KCNS2 MUTATED                              0                             1
  KCNS2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KCNS2 MUTATED                                               0
  KCNS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  KCNS2 MUTATED                                   0
  KCNS2 WILD-TYPE                                 2
D116V5, multiclass
                 vv
clus               T1  T2  T3  T4
  KCNS2 MUTATED     2   1   2   2
  KCNS2 WILD-TYPE  39 107  12   6
D116V6, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  T1             2              39
  T2             1             107
  T3             2              12
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  KCNS2 MUTATED    3  1     3
  KCNS2 WILD-TYPE 92 36    32
D116V7, multiclass
       clus
vv      KCNS2 MUTATED KCNS2 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  KCNS2 MUTATED     6   1   0
  KCNS2 WILD-TYPE 131   8  22
D116V8, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
                 vv
clus               I II III IV
  KCNS2 MUTATED    2  1   3  1
  KCNS2 WILD-TYPE 86 32  36  8
D116V9, multiclass
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  I               2              86
  II              1              32
  III             3              36
  IV              1               8
D116V10, binary
                 cls
clus                0   1
  KCNS2 MUTATED     1   6
  KCNS2 WILD-TYPE  15 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      1    6
  KCNS2 WILD-TYPE   15  150
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  NO              1              15
  YES             6             150
D116V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KCNS2 MUTATED                                             4
  KCNS2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KCNS2 MUTATED                                        2              0
  KCNS2 WILD-TYPE                                     44             28
                 vv
clus              LIFELONG NON-SMOKER
  KCNS2 MUTATED                     0
  KCNS2 WILD-TYPE                  24
D116V12, multiclass
                                             clus
vv                                            KCNS2 MUTATED KCNS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D116V13, continuous
[1] "Remove cluster labels:" "KCNS2 MUTATED"         
clus
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  KCNS2 MUTATED    4  0  1  1
  KCNS2 WILD-TYPE 98  5  3  9
D116V14, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             1               3
  RX             1               9

Clustering(117) Variable = C7ORF58 MUTATION ANALYSIS
D117V1, survival
                   sevent
clus2                0  1
  C7ORF58 MUTATED   12  4
  C7ORF58 WILD-TYPE 87 46
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               16               133 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                4                46 
$`C7ORF58 MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4427 TCGA-05-5420 TCGA-38-4631 TCGA-44-2656 
       47.05        20.05        26.01         1.02        11.64        19.10 
TCGA-44-6774 TCGA-49-4507 TCGA-49-6743 TCGA-50-5933 TCGA-50-6593 TCGA-64-5778 
        5.42         8.81        12.13        77.88        11.05        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-73-4668 TCGA-91-6831 
       39.52         7.33        15.35         1.28 

$`C7ORF58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
       32.84        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 
       37.02        83.84         0.10        16.67         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        1.32         4.01         1.25         1.22        41.33         1.15 
TCGA-91-6836 
        0.36 

  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
             1.02              0.07 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            77.88             85.32 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            13.74             13.87 
[1] "1.0 - 77.9 (13.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
[1] "hr=" "1.5"
D117V2, continuous
D117V3, binary
                   cls
clus                 0  1
  C7ORF58 MUTATED   10  7
  C7ORF58 WILD-TYPE 83 72
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED     10    7
  C7ORF58 WILD-TYPE   83   72
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  FEMALE              10                83
  MALE                 7                72
D117V4, continuous
[1] "Remove cluster labels:" "C7ORF58 MUTATED"       
clus
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C7ORF58 MUTATED                            0
  C7ORF58 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C7ORF58 MUTATED                                   7
  C7ORF58 WILD-TYPE                                32
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C7ORF58 MUTATED                                                    7
  C7ORF58 WILD-TYPE                                                107
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C7ORF58 MUTATED                                            0
  C7ORF58 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C7ORF58 MUTATED                                               1
  C7ORF58 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C7ORF58 MUTATED                                1
  C7ORF58 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C7ORF58 MUTATED                                    1
  C7ORF58 WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C7ORF58 MUTATED                              0                             0
  C7ORF58 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C7ORF58 MUTATED                                               0
  C7ORF58 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  C7ORF58 MUTATED                                   0
  C7ORF58 WILD-TYPE                                 2
D117V5, multiclass
                   vv
clus                T1 T2 T3 T4
  C7ORF58 MUTATED    3 11  1  2
  C7ORF58 WILD-TYPE 38 97 13  6
D117V6, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  T1               3                38
  T2              11                97
  T3               1                13
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  C7ORF58 MUTATED    7  4     6
  C7ORF58 WILD-TYPE 88 33    29
D117V7, multiclass
       clus
vv      C7ORF58 MUTATED C7ORF58 WILD-TYPE
  N0                  7                88
  N1                  4                33
  N2+N3               6                29
                   vv
clus                 M0  M1  MX
  C7ORF58 MUTATED    15   0   2
  C7ORF58 WILD-TYPE 122   9  20
D117V8, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  M0              15               122
  M1               0                 9
  MX               2                20
                   vv
clus                 I II III IV
  C7ORF58 MUTATED    7  3   7  0
  C7ORF58 WILD-TYPE 81 30  32  9
D117V9, multiclass
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  I                 7                81
  II                3                30
  III               7                32
  IV                0                 9
D117V10, binary
                   cls
clus                  0   1
  C7ORF58 MUTATED     2  15
  C7ORF58 WILD-TYPE  14 141
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED      2   15
  C7ORF58 WILD-TYPE   14  141
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  NO                2                14
  YES              15               141
D117V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C7ORF58 MUTATED                                            12
  C7ORF58 WILD-TYPE                                          50
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C7ORF58 MUTATED                                        1              3
  C7ORF58 WILD-TYPE                                     45             25
                   vv
clus                LIFELONG NON-SMOKER
  C7ORF58 MUTATED                     0
  C7ORF58 WILD-TYPE                  24
D117V12, multiclass
                                             clus
vv                                            C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              12                50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D117V13, continuous
                   vv
clus                R0 R1 R2 RX
  C7ORF58 MUTATED   10  0  0  1
  C7ORF58 WILD-TYPE 92  5  4  9
D117V14, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  R0              10                92
  R1               0                 5
  R2               0                 4
  RX               1                 9

Clustering(118) Variable = OR14A16 MUTATION ANALYSIS
D118V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    8  3
  OR14A16 WILD-TYPE 91 47
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               11               138 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                3                47 
$`OR14A16 MUTATED`
TCGA-05-4384 TCGA-38-4632 TCGA-44-2656 TCGA-44-2665 TCGA-44-3918 TCGA-49-6744 
       14.01        44.61        19.10        13.15         6.44        12.99 
TCGA-50-5933 TCGA-50-6590 TCGA-64-5815 TCGA-67-3770 TCGA-91-6836 
       77.88        42.31         7.33         0.99         0.36 

$`OR14A16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        16.67        39.52         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.36              0.07 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            77.88             85.32 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            13.15             13.97 
[1] "0.4 - 77.9 (13.2)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
[1] "hr=" "1.6"
D118V2, continuous
D118V3, binary
                   cls
clus                 0  1
  OR14A16 MUTATED    6  6
  OR14A16 WILD-TYPE 87 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      6    6
  OR14A16 WILD-TYPE   87   73
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               6                87
  MALE                 6                73
D118V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  OR14A16 MUTATED                            0
  OR14A16 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR14A16 MUTATED                                   4
  OR14A16 WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR14A16 MUTATED                                                    8
  OR14A16 WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR14A16 MUTATED                                            0
  OR14A16 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR14A16 MUTATED                                               0
  OR14A16 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  OR14A16 MUTATED                                0
  OR14A16 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  OR14A16 MUTATED                                    0
  OR14A16 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR14A16 MUTATED                              0                             0
  OR14A16 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR14A16 MUTATED                                               0
  OR14A16 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  OR14A16 MUTATED                                   0
  OR14A16 WILD-TYPE                                 2
D118V5, multiclass
                   vv
clus                T1 T2 T3 T4
  OR14A16 MUTATED    2  9  0  1
  OR14A16 WILD-TYPE 39 99 14  7
D118V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  OR14A16 MUTATED    6  4     2
  OR14A16 WILD-TYPE 89 33    33
D118V7, multiclass
       clus
vv      OR14A16 MUTATED OR14A16 WILD-TYPE
  N0                  6                89
  N1                  4                33
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  OR14A16 MUTATED     9   1   2
  OR14A16 WILD-TYPE 128   8  20
D118V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               2                20
                   vv
clus                 I II III IV
  OR14A16 MUTATED    6  3   2  1
  OR14A16 WILD-TYPE 82 30  37  8
D118V9, multiclass
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  I                 6                82
  II                3                30
  III               2                37
  IV                1                 8
D118V10, binary
                   cls
clus                  0   1
  OR14A16 MUTATED     1  11
  OR14A16 WILD-TYPE  15 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      1   11
  OR14A16 WILD-TYPE   15  145
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                1                15
  YES              11               145
D118V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR14A16 MUTATED                                             5
  OR14A16 WILD-TYPE                                          57
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR14A16 MUTATED                                        4              1
  OR14A16 WILD-TYPE                                     42             27
                   vv
clus                LIFELONG NON-SMOKER
  OR14A16 MUTATED                     1
  OR14A16 WILD-TYPE                  23
D118V12, multiclass
                                             clus
vv                                            OR14A16 MUTATED OR14A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       1                23
D118V13, continuous
                   vv
clus                R0 R1 R2 RX
  OR14A16 MUTATED    5  0  0  3
  OR14A16 WILD-TYPE 97  5  4  7
D118V14, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  R0               5                97
  R1               0                 5
  R2               0                 4
  RX               3                 7

Clustering(119) Variable = EPHA7 MUTATION ANALYSIS
D119V1, survival
                 sevent
clus2              0  1
  EPHA7 MUTATED    8  2
  EPHA7 WILD-TYPE 91 48
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             10             139 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
              2              48 
$`EPHA7 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-6144 TCGA-49-4505 
        9.96        30.02        26.01        19.10         0.30        14.07 
TCGA-50-5049 TCGA-55-1596 TCGA-55-6642 TCGA-67-3771 
       48.82        45.17        32.61         1.97 

$`EPHA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       38.73        48.62         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  EPHA7 MUTATED EPHA7 WILD-TYPE 
           0.30            0.07 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
          48.82           85.32 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
         22.555          13.150 
[1] "0.3 - 48.8 (22.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
[1] "hr=" "1.9"
D119V2, continuous
D119V3, binary
                 cls
clus               0  1
  EPHA7 MUTATED    3  8
  EPHA7 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      3    8
  EPHA7 WILD-TYPE   90   71
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D119V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHA7 MUTATED                            0                                 4
  EPHA7 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHA7 MUTATED                                                    7
  EPHA7 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHA7 MUTATED                                            0
  EPHA7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHA7 MUTATED                                               0
  EPHA7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHA7 MUTATED                                0
  EPHA7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHA7 MUTATED                                    0
  EPHA7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHA7 MUTATED                              0                             0
  EPHA7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHA7 MUTATED                                               0
  EPHA7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  EPHA7 MUTATED                                   0
  EPHA7 WILD-TYPE                                 2
D119V5, multiclass
                 vv
clus               T1  T2  T3  T4
  EPHA7 MUTATED     2   7   1   1
  EPHA7 WILD-TYPE  39 101  13   7
D119V6, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  EPHA7 MUTATED    7  4     0
  EPHA7 WILD-TYPE 88 33    35
D119V7, multiclass
       clus
vv      EPHA7 MUTATED EPHA7 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  EPHA7 MUTATED    10   0   1
  EPHA7 WILD-TYPE 127   9  21
D119V8, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  EPHA7 MUTATED    6  4   1  0
  EPHA7 WILD-TYPE 82 29  38  9
D119V9, multiclass
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  I               6              82
  II              4              29
  III             1              38
  IV              0               9
D119V10, binary
                 cls
clus                0   1
  EPHA7 MUTATED     1  10
  EPHA7 WILD-TYPE  15 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      1   10
  EPHA7 WILD-TYPE   15  146
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  NO              1              15
  YES            10             146
D119V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EPHA7 MUTATED                                             6
  EPHA7 WILD-TYPE                                          56
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EPHA7 MUTATED                                        1              3
  EPHA7 WILD-TYPE                                     45             25
                 vv
clus              LIFELONG NON-SMOKER
  EPHA7 MUTATED                     0
  EPHA7 WILD-TYPE                  24
D119V12, multiclass
                                             clus
vv                                            EPHA7 MUTATED EPHA7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D119V13, continuous
                 vv
clus              R0 R1 R2 RX
  EPHA7 MUTATED    5  1  0  2
  EPHA7 WILD-TYPE 97  4  4  8
D119V14, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  R0             5              97
  R1             1               4
  R2             0               4
  RX             2               8

Clustering(120) Variable = SERPINB13 MUTATION ANALYSIS
D120V1, survival
                     sevent
clus2                  0  1
  SERPINB13 MUTATED    8  0
  SERPINB13 WILD-TYPE 91 50
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  8                 141 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  0                  50 
$`SERPINB13 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-38-4626 TCGA-44-6774 TCGA-49-6743 TCGA-50-5072 
       47.05        14.93        85.32         5.42        12.13         8.05 
TCGA-67-3771 TCGA-73-4668 
        1.97        15.35 

$`SERPINB13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
               1.97                0.07 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              85.32               83.84 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              13.53               13.87 
[1] "2.0 - 85.3 (13.5)" "0.1 - 83.8 (13.9)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D120V2, continuous
D120V3, binary
                     cls
clus                   0  1
  SERPINB13 MUTATED    7  2
  SERPINB13 WILD-TYPE 86 77
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      7    2
  SERPINB13 WILD-TYPE   86   77
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  FEMALE                 7                  86
  MALE                   2                  77
D120V4, continuous
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  2                  10 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-5778          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676 
"SERPINB13 WILD-TYPE" 
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  SERPINB13 MUTATED                            0
  SERPINB13 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  SERPINB13 MUTATED                                   2
  SERPINB13 WILD-TYPE                                37
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SERPINB13 MUTATED                                                    5
  SERPINB13 WILD-TYPE                                                109
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SERPINB13 MUTATED                                            0
  SERPINB13 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  SERPINB13 MUTATED                                1
  SERPINB13 WILD-TYPE                              1
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                                    1
  SERPINB13 WILD-TYPE                                  1
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  SERPINB13 MUTATED                              0
  SERPINB13 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                               0
  SERPINB13 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) ADENOCARCINOMA
  SERPINB13 MUTATED                                   0
  SERPINB13 WILD-TYPE                                 2
D120V5, multiclass
                     vv
clus                   T1  T2  T3  T4
  SERPINB13 MUTATED     3   5   0   1
  SERPINB13 WILD-TYPE  38 103  14   7
D120V6, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  T1                 3                  38
  T2                 5                 103
  T3                 0                  14
  T4                 1                   7
                     vv
clus                  N0 N1 N2+N3
  SERPINB13 MUTATED    4  1     4
  SERPINB13 WILD-TYPE 91 36    31
D120V7, multiclass
       clus
vv      SERPINB13 MUTATED SERPINB13 WILD-TYPE
  N0                    4                  91
  N1                    1                  36
  N2+N3                 4                  31
                     vv
clus                   M0  M1  MX
  SERPINB13 MUTATED     8   0   1
  SERPINB13 WILD-TYPE 129   9  21
D120V8, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  M0                 8                 129
  M1                 0                   9
  MX                 1                  21
                     vv
clus                   I II III IV
  SERPINB13 MUTATED    3  2   4  0
  SERPINB13 WILD-TYPE 85 31  35  9
D120V9, multiclass
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  I                   3                  85
  II                  2                  31
  III                 4                  35
  IV                  0                   9
D120V10, binary
                     cls
clus                    0   1
  SERPINB13 MUTATED     1   8
  SERPINB13 WILD-TYPE  15 148
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      1    8
  SERPINB13 WILD-TYPE   15  148
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  1                  15
  YES                 8                 148
D120V11, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SERPINB13 MUTATED                                             4
  SERPINB13 WILD-TYPE                                          58
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SERPINB13 MUTATED                                        2              3
  SERPINB13 WILD-TYPE                                     44             25
                     vv
clus                  LIFELONG NON-SMOKER
  SERPINB13 MUTATED                     0
  SERPINB13 WILD-TYPE                  24
D120V12, multiclass
                                             clus
vv                                            SERPINB13 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              3
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            SERPINB13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               25
  LIFELONG NON-SMOKER                                          24
D120V13, continuous
                     vv
clus                  R0 R1 R2 RX
  SERPINB13 MUTATED    6  0  0  0
  SERPINB13 WILD-TYPE 96  5  4 10
D120V14, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  R0                 6                  96
  R1                 0                   5
  R2                 0                   4
  RX                 0                  10

Clustering(121) Variable = OR13G1 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  OR13G1 MUTATED    7  2
  OR13G1 WILD-TYPE 92 48
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              140 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               2               48 
$`OR13G1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-38-4625 TCGA-49-4514 TCGA-64-5778 TCGA-64-5781 
       19.92        26.01        47.61        43.20        30.44        39.52 
TCGA-67-3771 TCGA-73-4677 TCGA-91-6829 
        1.97         1.25        41.33 

$`OR13G1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       39.09        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 
       15.35         0.46         1.32         4.01         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR13G1 MUTATED OR13G1 WILD-TYPE 
            1.25             0.07 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           47.61            85.32 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           30.44            13.07 
[1] "1.2 - 47.6 (30.4)" "0.1 - 85.3 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
[1] "hr=" "2.3"
D121V2, continuous
D121V3, binary
                  cls
clus                0  1
  OR13G1 MUTATED    5  4
  OR13G1 WILD-TYPE 88 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      5    4
  OR13G1 WILD-TYPE   88   75
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D121V4, continuous
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR13G1 MUTATED                            0                                 3
  OR13G1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR13G1 MUTATED                                                    3
  OR13G1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR13G1 MUTATED                                            0
  OR13G1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR13G1 MUTATED                                               2
  OR13G1 WILD-TYPE                                             0
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR13G1 MUTATED                                0
  OR13G1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                                    0
  OR13G1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                              0                             1
  OR13G1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR13G1 MUTATED                                               0
  OR13G1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR13G1 MUTATED                                   0
  OR13G1 WILD-TYPE                                 2
D121V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR13G1 MUTATED     2   7   0   0
  OR13G1 WILD-TYPE  39 101  14   8
D121V6, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  T1              2               39
  T2              7              101
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR13G1 MUTATED    8  1     0
  OR13G1 WILD-TYPE 87 36    35
D121V7, multiclass
       clus
vv      OR13G1 MUTATED OR13G1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR13G1 MUTATED     8   0   1
  OR13G1 WILD-TYPE 129   9  21
D121V8, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR13G1 MUTATED    8  1   0  0
  OR13G1 WILD-TYPE 80 32  39  9
D121V9, multiclass
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  I                8               80
  II               1               32
  III              0               39
  IV               0                9
D121V10, binary
                  cls
clus                 0   1
  OR13G1 MUTATED     0   9
  OR13G1 WILD-TYPE  16 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   16  147
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               16
  YES              9              147
D121V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR13G1 MUTATED                                             6
  OR13G1 WILD-TYPE                                          56
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR13G1 MUTATED                                        2              1
  OR13G1 WILD-TYPE                                     44             27
                  vv
clus               LIFELONG NON-SMOKER
  OR13G1 MUTATED                     0
  OR13G1 WILD-TYPE                  24
D121V12, multiclass
                                             clus
vv                                            OR13G1 MUTATED OR13G1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D121V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR13G1 MUTATED    7  0  0  1
  OR13G1 WILD-TYPE 95  5  4  9
D121V14, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  R0              7               95
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(122) Variable = CDH18 MUTATION ANALYSIS
D122V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED   13  5
  CDH18 WILD-TYPE 86 45
  CDH18 MUTATED CDH18 WILD-TYPE 
             18             131 
  CDH18 MUTATED CDH18 WILD-TYPE 
              5              45 
$`CDH18 MUTATED`
TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-38-4631 
       47.05        30.02        26.01         8.68        47.61        11.64 
TCGA-44-3918 TCGA-44-6775 TCGA-44-6777 TCGA-49-4514 TCGA-49-6743 TCGA-50-5066 
        6.44         2.70        32.45        43.20        12.13         9.76 
TCGA-50-5931 TCGA-50-5933 TCGA-50-6592 TCGA-64-1676 TCGA-64-5781 TCGA-73-4668 
        8.78        77.88        25.51        56.81        39.52        15.35 

$`CDH18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.46        29.75        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CDH18 MUTATED CDH18 WILD-TYPE 
           2.70            0.07 
  CDH18 MUTATED CDH18 WILD-TYPE 
          77.88           85.32 
  CDH18 MUTATED CDH18 WILD-TYPE 
          25.76           13.15 
[1] "2.7 - 77.9 (25.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
[1] "hr=" "2.1"
D122V2, continuous
D122V3, binary
                 cls
clus               0  1
  CDH18 MUTATED   14  8
  CDH18 WILD-TYPE 79 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     14    8
  CDH18 WILD-TYPE   79   71
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE            14              79
  MALE               8              71
D122V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDH18 MUTATED                            0                                 7
  CDH18 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDH18 MUTATED                                                   11
  CDH18 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDH18 MUTATED                                            0
  CDH18 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDH18 MUTATED                                               0
  CDH18 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CDH18 MUTATED                                1
  CDH18 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CDH18 MUTATED                                    1
  CDH18 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDH18 MUTATED                              0                             2
  CDH18 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDH18 MUTATED                                               0
  CDH18 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  CDH18 MUTATED                                   0
  CDH18 WILD-TYPE                                 2
D122V5, multiclass
                 vv
clus              T1 T2 T3 T4
  CDH18 MUTATED    5 13  2  2
  CDH18 WILD-TYPE 36 95 12  6
D122V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             5              36
  T2            13              95
  T3             2              12
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  CDH18 MUTATED   13  3     5
  CDH18 WILD-TYPE 82 34    30
D122V7, multiclass
       clus
vv      CDH18 MUTATED CDH18 WILD-TYPE
  N0               13              82
  N1                3              34
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  CDH18 MUTATED    19   0   3
  CDH18 WILD-TYPE 118   9  19
D122V8, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  M0            19             118
  M1             0               9
  MX             3              19
                 vv
clus               I II III IV
  CDH18 MUTATED   13  4   5  0
  CDH18 WILD-TYPE 75 29  34  9
D122V9, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I              13              75
  II              4              29
  III             5              34
  IV              0               9
D122V10, binary
                 cls
clus                0   1
  CDH18 MUTATED     2  20
  CDH18 WILD-TYPE  14 136
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      2   20
  CDH18 WILD-TYPE   14  136
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  NO              2              14
  YES            20             136
D122V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CDH18 MUTATED                                            12
  CDH18 WILD-TYPE                                          50
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CDH18 MUTATED                                        4              3
  CDH18 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  CDH18 MUTATED                     1
  CDH18 WILD-TYPE                  23
D122V12, multiclass
                                             clus
vv                                            CDH18 MUTATED CDH18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D122V13, continuous
                 vv
clus              R0 R1 R2 RX
  CDH18 MUTATED   12  1  1  3
  CDH18 WILD-TYPE 90  4  3  7
D122V14, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  R0            12              90
  R1             1               4
  R2             1               3
  RX             3               7

Clustering(123) Variable = CTNNA2 MUTATION ANALYSIS
D123V1, survival
                  sevent
clus2               0  1
  CTNNA2 MUTATED   12  5
  CTNNA2 WILD-TYPE 87 45
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              17              132 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
               5               45 
$`CTNNA2 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-05-5715 
        3.98        37.02         9.96        26.01        25.02         2.04 
TCGA-44-2656 TCGA-44-5643 TCGA-44-6776 TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 
       19.10         3.48        63.72        12.13         4.93        71.47 
TCGA-50-5941 TCGA-50-6590 TCGA-55-1595 TCGA-91-6829 TCGA-91-6836 
        9.37        42.31        48.62        41.33         0.36 

$`CTNNA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 
       29.46        29.75        43.20        15.02        12.99        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 

  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            0.36             0.07 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           71.47            85.32 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           19.10            13.51 
[1] "0.4 - 71.5 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
[1] "hr=" "1.6"
D123V2, continuous
D123V3, binary
                  cls
clus                0  1
  CTNNA2 MUTATED   11  9
  CTNNA2 WILD-TYPE 82 70
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED     11    9
  CTNNA2 WILD-TYPE   82   70
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  FEMALE             11               82
  MALE                9               70
D123V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CTNNA2 MUTATED                            0                                 8
  CTNNA2 WILD-TYPE                          2                                31
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CTNNA2 MUTATED                                                    8
  CTNNA2 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CTNNA2 MUTATED                                            0
  CTNNA2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CTNNA2 MUTATED                                               1
  CTNNA2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CTNNA2 MUTATED                                2
  CTNNA2 WILD-TYPE                              0
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CTNNA2 MUTATED                                    0
  CTNNA2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CTNNA2 MUTATED                              0                             1
  CTNNA2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CTNNA2 MUTATED                                               0
  CTNNA2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CTNNA2 MUTATED                                   0
  CTNNA2 WILD-TYPE                                 2
D123V5, multiclass
                  vv
clus               T1 T2 T3 T4
  CTNNA2 MUTATED    5 13  1  1
  CTNNA2 WILD-TYPE 36 95 13  7
D123V6, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  T1              5               36
  T2             13               95
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CTNNA2 MUTATED   10  6     4
  CTNNA2 WILD-TYPE 85 31    31
D123V7, multiclass
       clus
vv      CTNNA2 MUTATED CTNNA2 WILD-TYPE
  N0                10               85
  N1                 6               31
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  CTNNA2 MUTATED    15   0   5
  CTNNA2 WILD-TYPE 122   9  17
D123V8, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  M0             15              122
  M1              0                9
  MX              5               17
                  vv
clus                I II III IV
  CTNNA2 MUTATED   11  3   6  0
  CTNNA2 WILD-TYPE 77 30  33  9
D123V9, multiclass
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  I               11               77
  II               3               30
  III              6               33
  IV               0                9
D123V10, binary
                  cls
clus                 0   1
  CTNNA2 MUTATED     2  18
  CTNNA2 WILD-TYPE  14 138
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      2   18
  CTNNA2 WILD-TYPE   14  138
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  NO               2               14
  YES             18              138
D123V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CTNNA2 MUTATED                                            11
  CTNNA2 WILD-TYPE                                          51
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CTNNA2 MUTATED                                        3              4
  CTNNA2 WILD-TYPE                                     43             24
                  vv
clus               LIFELONG NON-SMOKER
  CTNNA2 MUTATED                     1
  CTNNA2 WILD-TYPE                  23
D123V12, multiclass
                                             clus
vv                                            CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1               23
D123V13, continuous
                  vv
clus               R0 R1 R2 RX
  CTNNA2 MUTATED    7  0  1  1
  CTNNA2 WILD-TYPE 95  5  3  9
D123V14, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  R0              7               95
  R1              0                5
  R2              1                3
  RX              1                9

Clustering(124) Variable = OR5T2 MUTATION ANALYSIS
D124V1, survival
                 sevent
clus2              0  1
  OR5T2 MUTATED    7  1
  OR5T2 WILD-TYPE 92 49
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             141 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              49 
$`OR5T2 MUTATED`
TCGA-05-4390 TCGA-05-4405 TCGA-44-6147 TCGA-50-5045 TCGA-64-5781 TCGA-67-3770 
       37.02        20.05         7.76        71.47        39.52         0.99 
TCGA-73-4666 TCGA-91-6831 
       20.28         1.28 

$`OR5T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       41.33         1.15         0.36 

  OR5T2 MUTATED OR5T2 WILD-TYPE 
           0.99            0.07 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
          71.47           85.32 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
         20.165          13.150 
[1] "1.0 - 71.5 (20.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
[1] "hr=" "3.6"
D124V2, continuous
D124V3, binary
                 cls
clus               0  1
  OR5T2 MUTATED    7  1
  OR5T2 WILD-TYPE 86 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      7    1
  OR5T2 WILD-TYPE   86   78
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  FEMALE             7              86
  MALE               1              78
D124V4, continuous
[1] "Remove cluster labels:" "OR5T2 MUTATED"         
clus
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5T2 MUTATED                            0                                 3
  OR5T2 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5T2 MUTATED                                                    5
  OR5T2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5T2 MUTATED                                            0
  OR5T2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5T2 MUTATED                                               0
  OR5T2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5T2 MUTATED                                0
  OR5T2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5T2 MUTATED                                    0
  OR5T2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5T2 MUTATED                              0                             0
  OR5T2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5T2 MUTATED                                               0
  OR5T2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5T2 MUTATED                                   0
  OR5T2 WILD-TYPE                                 2
D124V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5T2 MUTATED     3   5   0   0
  OR5T2 WILD-TYPE  38 103  14   8
D124V6, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR5T2 MUTATED    6  1     0
  OR5T2 WILD-TYPE 89 36    35
D124V7, multiclass
       clus
vv      OR5T2 MUTATED OR5T2 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR5T2 MUTATED     6   1   1
  OR5T2 WILD-TYPE 131   8  21
D124V8, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             1              21
                 vv
clus               I II III IV
  OR5T2 MUTATED    7  0   0  1
  OR5T2 WILD-TYPE 81 33  39  8
D124V9, multiclass
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  I               7              81
  II              0              33
  III             0              39
  IV              1               8
D124V10, binary
                 cls
clus                0   1
  OR5T2 MUTATED     2   6
  OR5T2 WILD-TYPE  14 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      2    6
  OR5T2 WILD-TYPE   14  150
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  NO              2              14
  YES             6             150
D124V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5T2 MUTATED                                             4
  OR5T2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5T2 MUTATED                                        2              1
  OR5T2 WILD-TYPE                                     44             27
                 vv
clus              LIFELONG NON-SMOKER
  OR5T2 MUTATED                     0
  OR5T2 WILD-TYPE                  24
D124V12, multiclass
                                             clus
vv                                            OR5T2 MUTATED OR5T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D124V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR5T2 MUTATED    5  0  0  0
  OR5T2 WILD-TYPE 97  5  4 10
D124V14, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(125) Variable = APCS MUTATION ANALYSIS
D125V1, survival
                sevent
clus2             0  1
  APCS MUTATED    4  0
  APCS WILD-TYPE 95 50
  APCS MUTATED APCS WILD-TYPE 
             4            145 
  APCS MUTATED APCS WILD-TYPE 
             0             50 
$`APCS MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-44-3918 TCGA-44-6778 
       37.02        14.93         6.44        36.49 

$`APCS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  APCS MUTATED APCS WILD-TYPE 
          6.44           0.07 
  APCS MUTATED APCS WILD-TYPE 
         37.02          85.32 
  APCS MUTATED APCS WILD-TYPE 
         25.71          13.15 
[1] "6.4 - 37.0 (25.7)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
[1] "hr="     "2.6e+07"
D125V2, continuous
D125V3, binary
                cls
clus              0  1
  APCS MUTATED    3  1
  APCS WILD-TYPE 90 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  APCS MUTATED      3    1
  APCS WILD-TYPE   90   78
        clus
vv       APCS MUTATED APCS WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D125V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  APCS MUTATED                            0                                 2
  APCS WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  APCS MUTATED                                                    2
  APCS WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  APCS MUTATED                                            0
  APCS WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  APCS MUTATED                                               0
  APCS WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  APCS MUTATED                                0
  APCS WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  APCS MUTATED                                    0
  APCS WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  APCS MUTATED                              0                             0
  APCS WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  APCS MUTATED                                               0
  APCS WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  APCS MUTATED                                   0
  APCS WILD-TYPE                                 2
D125V5, multiclass
                vv
clus              T1  T2  T3  T4
  APCS MUTATED     2   2   0   0
  APCS WILD-TYPE  39 106  14   8
D125V6, multiclass
    clus
vv   APCS MUTATED APCS WILD-TYPE
  T1            2             39
  T2            2            106
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  APCS MUTATED    4  0     0
  APCS WILD-TYPE 91 37    35
D125V7, multiclass
       clus
vv      APCS MUTATED APCS WILD-TYPE
  N0               4             91
  N1               0             37
  N2+N3            0             35
                vv
clus              M0  M1  MX
  APCS MUTATED     3   0   1
  APCS WILD-TYPE 134   9  21
D125V8, multiclass
    clus
vv   APCS MUTATED APCS WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  APCS MUTATED    4  0   0  0
  APCS WILD-TYPE 84 33  39  9
D125V9, multiclass
     clus
vv    APCS MUTATED APCS WILD-TYPE
  I              4             84
  II             0             33
  III            0             39
  IV             0              9
D125V10, binary
                cls
clus               0   1
  APCS MUTATED     0   4
  APCS WILD-TYPE  16 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  APCS MUTATED      0    4
  APCS WILD-TYPE   16  152
     clus
vv    APCS MUTATED APCS WILD-TYPE
  NO             0             16
  YES            4            152
D125V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  APCS MUTATED                                             3
  APCS WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  APCS MUTATED                                        1              0
  APCS WILD-TYPE                                     45             28
                vv
clus             LIFELONG NON-SMOKER
  APCS MUTATED                     0
  APCS WILD-TYPE                  24
D125V12, multiclass
                                             clus
vv                                            APCS MUTATED APCS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D125V13, continuous
                vv
clus             R0 R1 R2 RX
  APCS MUTATED    3  0  0  0
  APCS WILD-TYPE 99  5  4 10
D125V14, multiclass
    clus
vv   APCS MUTATED APCS WILD-TYPE
  R0            3             99
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(126) Variable = IFNA7 MUTATION ANALYSIS
D126V1, survival
                 sevent
clus2              0  1
  IFNA7 MUTATED    3  2
  IFNA7 WILD-TYPE 96 48
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             144 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              2              48 
$`IFNA7 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-44-2659 TCGA-44-6774 
        9.96        24.03        30.02        17.39         5.42 

$`IFNA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  IFNA7 MUTATED IFNA7 WILD-TYPE 
           5.42            0.07 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
          30.02           85.32 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
          17.39           13.51 
[1] "5.4 - 30.0 (17.4)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
[1] "hr=" "1.6"
D126V2, continuous
D126V3, binary
                 cls
clus               0  1
  IFNA7 MUTATED    2  3
  IFNA7 WILD-TYPE 91 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      2    3
  IFNA7 WILD-TYPE   91   76
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  FEMALE             2              91
  MALE               3              76
D126V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  IFNA7 MUTATED                            0                                 3
  IFNA7 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IFNA7 MUTATED                                                    2
  IFNA7 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IFNA7 MUTATED                                            0
  IFNA7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  IFNA7 MUTATED                                0
  IFNA7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                                    0
  IFNA7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                              0                             0
  IFNA7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  IFNA7 MUTATED                                   0
  IFNA7 WILD-TYPE                                 2
D126V5, multiclass
                 vv
clus               T1  T2  T3  T4
  IFNA7 MUTATED     2   1   1   1
  IFNA7 WILD-TYPE  39 107  13   7
D126V6, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  T1             2              39
  T2             1             107
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  IFNA7 MUTATED    1  3     1
  IFNA7 WILD-TYPE 94 34    34
D126V7, multiclass
       clus
vv      IFNA7 MUTATED IFNA7 WILD-TYPE
  N0                1              94
  N1                3              34
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  IFNA7 MUTATED     5   0   0
  IFNA7 WILD-TYPE 132   9  22
D126V8, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  IFNA7 MUTATED    0  3   2  0
  IFNA7 WILD-TYPE 88 30  37  9
D126V9, multiclass
     clus
vv    IFNA7 MUTATED IFNA7 WILD-TYPE
  I               0              88
  II              3              30
  III             2              37
  IV              0               9
D126V10, binary
                 cls
clus                0   1
  IFNA7 MUTATED     0   5
  IFNA7 WILD-TYPE  16 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      0    5
  IFNA7 WILD-TYPE   16  151
     clus
vv    IFNA7 MUTATED IFNA7 WILD-TYPE
  NO              0              16
  YES             5             151
D126V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  IFNA7 MUTATED                                             2
  IFNA7 WILD-TYPE                                          60
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  IFNA7 MUTATED                                        1              2
  IFNA7 WILD-TYPE                                     45             26
                 vv
clus              LIFELONG NON-SMOKER
  IFNA7 MUTATED                     0
  IFNA7 WILD-TYPE                  24
D126V12, multiclass
                                             clus
vv                                            IFNA7 MUTATED IFNA7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D126V13, continuous
                 vv
clus              R0 R1 R2 RX
  IFNA7 MUTATED    3  1  0  0
  IFNA7 WILD-TYPE 99  4  4 10
D126V14, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  R0             3              99
  R1             1               4
  R2             0               4
  RX             0              10

Clustering(127) Variable = UGT2B10 MUTATION ANALYSIS
D127V1, survival
                   sevent
clus2                0  1
  UGT2B10 MUTATED    9  2
  UGT2B10 WILD-TYPE 90 48
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               138 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
                2                48 
$`UGT2B10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4424 TCGA-05-4432 TCGA-44-3396 TCGA-44-4112 
       19.92         9.96        30.02        25.02        10.22         4.60 
TCGA-49-6744 TCGA-50-5066 TCGA-55-5899 TCGA-64-5775 TCGA-64-5815 
       12.99         9.76         2.86         0.10         7.33 

$`UGT2B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             0.10              0.07 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
            30.02             85.32 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             9.96             14.50 
[1] "0.1 - 30.0 (10.0)" "0.1 - 85.3 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
[1] "hr=" "1.1"
D127V2, continuous
D127V3, binary
                   cls
clus                 0  1
  UGT2B10 MUTATED    3  8
  UGT2B10 WILD-TYPE 90 71
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      3    8
  UGT2B10 WILD-TYPE   90   71
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  FEMALE               3                90
  MALE                 8                71
D127V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  UGT2B10 MUTATED                            0
  UGT2B10 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  UGT2B10 MUTATED                                   7
  UGT2B10 WILD-TYPE                                32
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  UGT2B10 MUTATED                                                    4
  UGT2B10 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  UGT2B10 MUTATED                                            0
  UGT2B10 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  UGT2B10 MUTATED                                               0
  UGT2B10 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  UGT2B10 MUTATED                                0
  UGT2B10 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  UGT2B10 MUTATED                                    0
  UGT2B10 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  UGT2B10 MUTATED                              0                             0
  UGT2B10 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  UGT2B10 MUTATED                                               0
  UGT2B10 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  UGT2B10 MUTATED                                   0
  UGT2B10 WILD-TYPE                                 2
D127V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  UGT2B10 MUTATED     1   7   1   2
  UGT2B10 WILD-TYPE  40 101  13   6
D127V6, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  T1               1                40
  T2               7               101
  T3               1                13
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  UGT2B10 MUTATED    5  5     1
  UGT2B10 WILD-TYPE 90 32    34
D127V7, multiclass
       clus
vv      UGT2B10 MUTATED UGT2B10 WILD-TYPE
  N0                  5                90
  N1                  5                32
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  UGT2B10 MUTATED    10   0   1
  UGT2B10 WILD-TYPE 127   9  21
D127V8, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  UGT2B10 MUTATED    4  4   3  0
  UGT2B10 WILD-TYPE 84 29  36  9
D127V9, multiclass
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  I                 4                84
  II                4                29
  III               3                36
  IV                0                 9
D127V10, binary
                   cls
clus                  0   1
  UGT2B10 MUTATED     0  11
  UGT2B10 WILD-TYPE  16 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      0   11
  UGT2B10 WILD-TYPE   16  145
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  NO                0                16
  YES              11               145
D127V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  UGT2B10 MUTATED                                             3
  UGT2B10 WILD-TYPE                                          59
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  UGT2B10 MUTATED                                        3              4
  UGT2B10 WILD-TYPE                                     43             24
                   vv
clus                LIFELONG NON-SMOKER
  UGT2B10 MUTATED                     1
  UGT2B10 WILD-TYPE                  23
D127V12, multiclass
                                             clus
vv                                            UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       1                23
D127V13, continuous
                   vv
clus                R0 R1 R2 RX
  UGT2B10 MUTATED    9  1  0  1
  UGT2B10 WILD-TYPE 93  4  4  9
D127V14, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  R0               9                93
  R1               1                 4
  R2               0                 4
  RX               1                 9

Clustering(128) Variable = PPP3CA MUTATION ANALYSIS
D128V1, survival
                  sevent
clus2               0  1
  PPP3CA MUTATED    2  0
  PPP3CA WILD-TYPE 97 50
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              147 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               0               50 
$`PPP3CA MUTATED`
TCGA-44-5643 TCGA-73-4676 
        3.48         4.01 

$`PPP3CA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       10.22         8.32         6.44         6.21         4.60         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         1.32         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  PPP3CA MUTATED PPP3CA WILD-TYPE 
            3.48             0.07 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
            4.01            85.32 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
           3.745           14.010 
[1] "3.5 - 4.0 (3.7)"   "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6593 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-1592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6642       TCGA-55-6712       TCGA-64-1676 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-64-5774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5815       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774       TCGA-67-6215       TCGA-67-6216 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D128V2, continuous
D128V3, binary
                  cls
clus                0  1
  PPP3CA MUTATED    0  3
  PPP3CA WILD-TYPE 93 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      0    3
  PPP3CA WILD-TYPE   93   76
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  FEMALE              0               93
  MALE                3               76
D128V4, continuous
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-75-5122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PPP3CA MUTATED                            0                                 1
  PPP3CA WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PPP3CA MUTATED                                                    2
  PPP3CA WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PPP3CA MUTATED                                            0
  PPP3CA WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PPP3CA MUTATED                                               0
  PPP3CA WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PPP3CA MUTATED                                0
  PPP3CA WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PPP3CA MUTATED                                    0
  PPP3CA WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PPP3CA MUTATED                              0                             0
  PPP3CA WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PPP3CA MUTATED                                               0
  PPP3CA WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  PPP3CA MUTATED                                   0
  PPP3CA WILD-TYPE                                 2
D128V5, multiclass
                  vv
clus                T1  T2  T3  T4
  PPP3CA MUTATED     0   3   0   0
  PPP3CA WILD-TYPE  41 105  14   8
D128V6, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  T1              0               41
  T2              3              105
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  PPP3CA MUTATED    1  1     1
  PPP3CA WILD-TYPE 94 36    34
D128V7, multiclass
       clus
vv      PPP3CA MUTATED PPP3CA WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  PPP3CA MUTATED     3   0   0
  PPP3CA WILD-TYPE 134   9  22
D128V8, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  PPP3CA MUTATED    1  1   1  0
  PPP3CA WILD-TYPE 87 32  38  9
D128V9, multiclass
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  I                1               87
  II               1               32
  III              1               38
  IV               0                9
D128V10, binary
                  cls
clus                 0   1
  PPP3CA MUTATED     2   1
  PPP3CA WILD-TYPE  14 155
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      2    1
  PPP3CA WILD-TYPE   14  155
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  NO               2               14
  YES              1              155
D128V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PPP3CA MUTATED                                             2
  PPP3CA WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PPP3CA MUTATED                                        0              1
  PPP3CA WILD-TYPE                                     46             27
                  vv
clus               LIFELONG NON-SMOKER
  PPP3CA MUTATED                     0
  PPP3CA WILD-TYPE                  24
D128V12, multiclass
                                             clus
vv                                            PPP3CA MUTATED PPP3CA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D128V13, continuous
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6642       TCGA-55-6712       TCGA-64-1677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-73-4659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4675       TCGA-91-6829       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  PPP3CA MUTATED     2   0   0   0
  PPP3CA WILD-TYPE 100   5   4  10
D128V14, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              119 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-3615       TCGA-35-4122       TCGA-35-4123 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2657 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-44-6144 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6767       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1596       TCGA-55-5899 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3773       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 

Clustering(129) Variable = TBX5 MUTATION ANALYSIS
D129V1, survival
                sevent
clus2             0  1
  TBX5 MUTATED    6  4
  TBX5 WILD-TYPE 93 46
  TBX5 MUTATED TBX5 WILD-TYPE 
            10            139 
  TBX5 MUTATED TBX5 WILD-TYPE 
             4             46 
$`TBX5 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-35-4122 TCGA-44-2655 TCGA-44-2656 TCGA-50-5933 
        3.98         9.96         7.36        18.87        19.10        77.88 
TCGA-55-5899 TCGA-67-6217 TCGA-73-4659 TCGA-91-6828 
        2.86        13.87        23.38         1.22 

$`TBX5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX5 MUTATED TBX5 WILD-TYPE 
          1.22           0.07 
  TBX5 MUTATED TBX5 WILD-TYPE 
         77.88          85.32 
  TBX5 MUTATED TBX5 WILD-TYPE 
        11.915         14.010 
[1] "1.2 - 77.9 (11.9)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
[1] "hr=" "1.3"
D129V2, continuous
D129V3, binary
                cls
clus              0  1
  TBX5 MUTATED    3  8
  TBX5 WILD-TYPE 90 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      3    8
  TBX5 WILD-TYPE   90   71
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  FEMALE            3             90
  MALE              8             71
D129V4, continuous
[1] "Remove cluster labels:" "TBX5 MUTATED"          
clus
  TBX5 MUTATED TBX5 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX5 MUTATED                            0                                 1
  TBX5 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX5 MUTATED                                                   10
  TBX5 WILD-TYPE                                                104
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX5 MUTATED                                            0
  TBX5 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX5 MUTATED                                               0
  TBX5 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TBX5 MUTATED                                0
  TBX5 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX5 MUTATED                                    0
  TBX5 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX5 MUTATED                              0                             0
  TBX5 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX5 MUTATED                                               0
  TBX5 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  TBX5 MUTATED                                   0
  TBX5 WILD-TYPE                                 2
D129V5, multiclass
                vv
clus              T1  T2  T3  T4
  TBX5 MUTATED     4   4   1   2
  TBX5 WILD-TYPE  37 104  13   6
D129V6, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  TBX5 MUTATED    5  4     2
  TBX5 WILD-TYPE 90 33    33
D129V7, multiclass
       clus
vv      TBX5 MUTATED TBX5 WILD-TYPE
  N0               5             90
  N1               4             33
  N2+N3            2             33
                vv
clus              M0  M1  MX
  TBX5 MUTATED    10   0   1
  TBX5 WILD-TYPE 127   9  21
D129V8, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  M0           10            127
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  TBX5 MUTATED    6  1   4  0
  TBX5 WILD-TYPE 82 32  35  9
D129V9, multiclass
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  I              6             82
  II             1             32
  III            4             35
  IV             0              9
D129V10, binary
                cls
clus               0   1
  TBX5 MUTATED     1  10
  TBX5 WILD-TYPE  15 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      1   10
  TBX5 WILD-TYPE   15  146
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  NO             1             15
  YES           10            146
D129V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TBX5 MUTATED                                             3
  TBX5 WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TBX5 MUTATED                                        6              1
  TBX5 WILD-TYPE                                     40             27
                vv
clus             LIFELONG NON-SMOKER
  TBX5 MUTATED                     0
  TBX5 WILD-TYPE                  24
D129V12, multiclass
                                             clus
vv                                            TBX5 MUTATED TBX5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6             40
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D129V13, continuous
                vv
clus             R0 R1 R2 RX
  TBX5 MUTATED    7  0  1  0
  TBX5 WILD-TYPE 95  5  3 10
D129V14, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  R0            7             95
  R1            0              5
  R2            1              3
  RX            0             10

Clustering(130) Variable = VN1R2 MUTATION ANALYSIS
D130V1, survival
                 sevent
clus2              0  1
  VN1R2 MUTATED    3  3
  VN1R2 WILD-TYPE 96 47
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              6             143 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              3              47 
$`VN1R2 MUTATED`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4424 TCGA-44-6777 TCGA-50-5072 TCGA-50-6592 
       37.02         8.98        30.02        32.45         8.05        25.51 

$`VN1R2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  VN1R2 MUTATED VN1R2 WILD-TYPE 
           8.05            0.07 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
          37.02           85.32 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
         27.765          13.150 
[1] "8.1 - 37.0 (27.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
[1] "hr=" "1.4"
D130V2, continuous
D130V3, binary
                 cls
clus               0  1
  VN1R2 MUTATED    3  4
  VN1R2 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      3    4
  VN1R2 WILD-TYPE   90   75
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D130V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  VN1R2 MUTATED                            0                                 4
  VN1R2 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  VN1R2 MUTATED                                                    3
  VN1R2 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  VN1R2 MUTATED                                            0
  VN1R2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  VN1R2 MUTATED                                               0
  VN1R2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  VN1R2 MUTATED                                0
  VN1R2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  VN1R2 MUTATED                                    0
  VN1R2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  VN1R2 MUTATED                              0                             0
  VN1R2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  VN1R2 MUTATED                                               0
  VN1R2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  VN1R2 MUTATED                                   0
  VN1R2 WILD-TYPE                                 2
D130V5, multiclass
                 vv
clus               T1  T2  T3  T4
  VN1R2 MUTATED     0   5   2   0
  VN1R2 WILD-TYPE  41 103  12   8
D130V6, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  T1             0              41
  T2             5             103
  T3             2              12
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  VN1R2 MUTATED    4  0     2
  VN1R2 WILD-TYPE 91 37    33
D130V7, multiclass
       clus
vv      VN1R2 MUTATED VN1R2 WILD-TYPE
  N0                4              91
  N1                0              37
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  VN1R2 MUTATED     6   0   1
  VN1R2 WILD-TYPE 131   9  21
D130V8, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  VN1R2 MUTATED    4  1   2  0
  VN1R2 WILD-TYPE 84 32  37  9
D130V9, multiclass
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D130V10, binary
                 cls
clus                0   1
  VN1R2 MUTATED     2   5
  VN1R2 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      2    5
  VN1R2 WILD-TYPE   14  151
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  NO              2              14
  YES             5             151
D130V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  VN1R2 MUTATED                                             5
  VN1R2 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  VN1R2 MUTATED                                        1              1
  VN1R2 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  VN1R2 MUTATED                     0
  VN1R2 WILD-TYPE                  24
D130V12, multiclass
                                             clus
vv                                            VN1R2 MUTATED VN1R2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D130V13, continuous
                 vv
clus               R0  R1  R2  RX
  VN1R2 MUTATED     2   1   0   1
  VN1R2 WILD-TYPE 100   4   4   9
D130V14, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  R0             2             100
  R1             1               4
  R2             0               4
  RX             1               9

Clustering(131) Variable = ADAMTS18 MUTATION ANALYSIS
D131V1, survival
                    sevent
clus2                 0  1
  ADAMTS18 MUTATED   10  4
  ADAMTS18 WILD-TYPE 89 46
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                14                135 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 4                 46 
$`ADAMTS18 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-35-4123 
       19.92        37.02         9.96        26.01        25.02         5.95 
TCGA-38-4632 TCGA-44-6145 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-50-5049 
       44.61         3.35        29.75        43.20        15.02        48.82 
TCGA-55-6642 TCGA-91-6829 
       32.61        41.33 

$`ADAMTS18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
              3.35               0.07 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             48.82              85.32 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             27.88              12.66 
[1] "3.4 - 48.8 (27.9)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
[1] "hr=" "1.7"
D131V2, continuous
D131V3, binary
                    cls
clus                  0  1
  ADAMTS18 MUTATED    7 10
  ADAMTS18 WILD-TYPE 86 69
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      7   10
  ADAMTS18 WILD-TYPE   86   69
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  FEMALE                7                 86
  MALE                 10                 69
D131V4, continuous
[1] "Remove cluster labels:" "ADAMTS18 MUTATED"      
clus
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-5375         TCGA-64-1677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  ADAMTS18 MUTATED                            0
  ADAMTS18 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS18 MUTATED                                   7
  ADAMTS18 WILD-TYPE                                32
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS18 MUTATED                                                    7
  ADAMTS18 WILD-TYPE                                                107
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS18 MUTATED                                            0
  ADAMTS18 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS18 MUTATED                                               1
  ADAMTS18 WILD-TYPE                                             1
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS18 MUTATED                                0
  ADAMTS18 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS18 MUTATED                                    0
  ADAMTS18 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS18 MUTATED                              0                             1
  ADAMTS18 WILD-TYPE                            2                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS18 MUTATED                                               0
  ADAMTS18 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  ADAMTS18 MUTATED                                   1
  ADAMTS18 WILD-TYPE                                 1
D131V5, multiclass
                    vv
clus                 T1 T2 T3 T4
  ADAMTS18 MUTATED    4 11  0  2
  ADAMTS18 WILD-TYPE 37 97 14  6
D131V6, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  T1                4                 37
  T2               11                 97
  T3                0                 14
  T4                2                  6
                    vv
clus                 N0 N1 N2+N3
  ADAMTS18 MUTATED   10  5     2
  ADAMTS18 WILD-TYPE 85 32    33
D131V7, multiclass
       clus
vv      ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  N0                  10                 85
  N1                   5                 32
  N2+N3                2                 33
                    vv
clus                  M0  M1  MX
  ADAMTS18 MUTATED    12   1   4
  ADAMTS18 WILD-TYPE 125   8  18
D131V8, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  M0               12                125
  M1                1                  8
  MX                4                 18
                    vv
clus                  I II III IV
  ADAMTS18 MUTATED   10  3   3  1
  ADAMTS18 WILD-TYPE 78 30  36  8
D131V9, multiclass
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                3                 36
  IV                 1                  8
D131V10, binary
                    cls
clus                   0   1
  ADAMTS18 MUTATED     1  16
  ADAMTS18 WILD-TYPE  15 140
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      1   16
  ADAMTS18 WILD-TYPE   15  140
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  NO                 1                 15
  YES               16                140
D131V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ADAMTS18 MUTATED                                             8
  ADAMTS18 WILD-TYPE                                          54
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ADAMTS18 MUTATED                                        4              2
  ADAMTS18 WILD-TYPE                                     42             26
                    vv
clus                 LIFELONG NON-SMOKER
  ADAMTS18 MUTATED                     2
  ADAMTS18 WILD-TYPE                  22
D131V12, multiclass
                                             clus
vv                                            ADAMTS18 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            ADAMTS18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                         22
D131V13, continuous
                    vv
clus                 R0 R1 R2 RX
  ADAMTS18 MUTATED   10  0  0  1
  ADAMTS18 WILD-TYPE 92  5  4  9
D131V14, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  R0               10                 92
  R1                0                  5
  R2                0                  4
  RX                1                  9

Clustering(132) Variable = PSG6 MUTATION ANALYSIS
D132V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    7  3
  PSG6 WILD-TYPE 92 47
  PSG6 MUTATED PSG6 WILD-TYPE 
            10            139 
  PSG6 MUTATED PSG6 WILD-TYPE 
             3             47 
$`PSG6 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-38-4625 TCGA-38-4626 TCGA-38-4632 
        9.96        30.02        26.01        47.61        85.32        44.61 
TCGA-49-4514 TCGA-50-5049 TCGA-50-5066 TCGA-73-4677 
       43.20        48.82         9.76         1.25 

$`PSG6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95         8.68        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       14.07        32.84         8.81        29.46        29.75        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PSG6 MUTATED PSG6 WILD-TYPE 
          1.25           0.07 
  PSG6 MUTATED PSG6 WILD-TYPE 
         85.32          83.84 
  PSG6 MUTATED PSG6 WILD-TYPE 
         36.61          13.15 
[1] "1.2 - 85.3 (36.6)" "0.1 - 83.8 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
[1] "hr=" "2.4"
D132V2, continuous
D132V3, binary
                cls
clus              0  1
  PSG6 MUTATED    4  7
  PSG6 WILD-TYPE 89 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      4    7
  PSG6 WILD-TYPE   89   72
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            4             89
  MALE              7             72
D132V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PSG6 MUTATED                            0                                 4
  PSG6 WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PSG6 MUTATED                                                    6
  PSG6 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PSG6 MUTATED                                            0
  PSG6 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PSG6 MUTATED                                               0
  PSG6 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PSG6 MUTATED                                0
  PSG6 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PSG6 MUTATED                                    0
  PSG6 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PSG6 MUTATED                              0                             1
  PSG6 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PSG6 MUTATED                                               0
  PSG6 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  PSG6 MUTATED                                   0
  PSG6 WILD-TYPE                                 2
D132V5, multiclass
                vv
clus              T1  T2  T3  T4
  PSG6 MUTATED     1   7   2   1
  PSG6 WILD-TYPE  40 101  12   7
D132V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             40
  T2            7            101
  T3            2             12
  T4            1              7
                vv
clus             N0 N1 N2+N3
  PSG6 MUTATED    8  3     0
  PSG6 WILD-TYPE 87 34    35
D132V7, multiclass
       clus
vv      PSG6 MUTATED PSG6 WILD-TYPE
  N0               8             87
  N1               3             34
  N2+N3            0             35
                vv
clus              M0  M1  MX
  PSG6 MUTATED    10   1   0
  PSG6 WILD-TYPE 127   8  22
D132V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
                vv
clus              I II III IV
  PSG6 MUTATED    6  3   1  1
  PSG6 WILD-TYPE 82 30  38  8
D132V9, multiclass
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  I              6             82
  II             3             30
  III            1             38
  IV             1              8
D132V10, binary
                cls
clus               0   1
  PSG6 MUTATED     1  10
  PSG6 WILD-TYPE  15 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      1   10
  PSG6 WILD-TYPE   15  146
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             1             15
  YES           10            146
D132V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PSG6 MUTATED                                             4
  PSG6 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PSG6 MUTATED                                        3              2
  PSG6 WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  PSG6 MUTATED                     1
  PSG6 WILD-TYPE                  23
D132V12, multiclass
                                             clus
vv                                            PSG6 MUTATED PSG6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    1             23
D132V13, continuous
                vv
clus             R0 R1 R2 RX
  PSG6 MUTATED    8  1  0  1
  PSG6 WILD-TYPE 94  4  4  9
D132V14, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  R0            8             94
  R1            1              4
  R2            0              4
  RX            1              9

Clustering(133) Variable = CCDC73 MUTATION ANALYSIS
D133V1, survival
                  sevent
clus2               0  1
  CCDC73 MUTATED    7  3
  CCDC73 WILD-TYPE 92 47
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              10              139 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               3               47 
$`CCDC73 MUTATED`
TCGA-05-5423 TCGA-38-4625 TCGA-44-6147 TCGA-49-4488 TCGA-50-5049 TCGA-50-5051 
        4.96        47.61         7.76        28.57        48.82        14.96 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-91-6829 
       12.16        48.62         2.86        41.33 

$`CCDC73 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       38.73        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  CCDC73 MUTATED CCDC73 WILD-TYPE 
            2.86             0.07 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
           48.82            85.32 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
          21.765           13.150 
[1] "2.9 - 48.8 (21.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
[1] "hr=" "1.5"
D133V2, continuous
D133V3, binary
                  cls
clus                0  1
  CCDC73 MUTATED    7  4
  CCDC73 WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      7    4
  CCDC73 WILD-TYPE   86   75
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D133V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CCDC73 MUTATED                            0                                 1
  CCDC73 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC73 MUTATED                                                    7
  CCDC73 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CCDC73 MUTATED                                            0
  CCDC73 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CCDC73 MUTATED                                               1
  CCDC73 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CCDC73 MUTATED                                1
  CCDC73 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                                    0
  CCDC73 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                              0                             1
  CCDC73 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CCDC73 MUTATED                                               0
  CCDC73 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CCDC73 MUTATED                                   0
  CCDC73 WILD-TYPE                                 2
D133V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CCDC73 MUTATED     4   5   2   0
  CCDC73 WILD-TYPE  37 103  12   8
D133V6, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CCDC73 MUTATED    5  2     3
  CCDC73 WILD-TYPE 90 35    32
D133V7, multiclass
       clus
vv      CCDC73 MUTATED CCDC73 WILD-TYPE
  N0                 5               90
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  CCDC73 MUTATED     9   0   2
  CCDC73 WILD-TYPE 128   9  20
D133V8, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  CCDC73 MUTATED    7  1   3  0
  CCDC73 WILD-TYPE 81 32  36  9
D133V9, multiclass
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  I                7               81
  II               1               32
  III              3               36
  IV               0                9
D133V10, binary
                  cls
clus                 0   1
  CCDC73 MUTATED     2   9
  CCDC73 WILD-TYPE  14 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      2    9
  CCDC73 WILD-TYPE   14  147
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               2               14
  YES              9              147
D133V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CCDC73 MUTATED                                             5
  CCDC73 WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CCDC73 MUTATED                                        3              2
  CCDC73 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  CCDC73 MUTATED                     0
  CCDC73 WILD-TYPE                  24
D133V12, multiclass
                                             clus
vv                                            CCDC73 MUTATED CCDC73 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D133V13, continuous
                  vv
clus               R0 R1 R2 RX
  CCDC73 MUTATED    4  0  1  0
  CCDC73 WILD-TYPE 98  5  3 10
D133V14, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  R0              4               98
  R1              0                5
  R2              1                3
  RX              0               10

Clustering(134) Variable = OR10G8 MUTATION ANALYSIS
D134V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    4  2
  OR10G8 WILD-TYPE 95 48
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               6              143 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2               48 
$`OR10G8 MUTATED`
TCGA-05-4382 TCGA-35-4122 TCGA-44-6144 TCGA-50-5933 TCGA-50-6592 TCGA-64-1676 
       19.92         7.36         0.30        77.88        25.51        56.81 

$`OR10G8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        6.44         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.30             0.07 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
           77.88            85.32 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          22.715           13.150 
[1] "0.3 - 77.9 (22.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
[1] "hr=" "2.1"
D134V2, continuous
D134V3, binary
                  cls
clus                0  1
  OR10G8 MUTATED    2  6
  OR10G8 WILD-TYPE 91 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      2    6
  OR10G8 WILD-TYPE   91   73
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              2               91
  MALE                6               73
D134V4, continuous
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10G8 MUTATED                            0                                 2
  OR10G8 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G8 MUTATED                                                    5
  OR10G8 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10G8 MUTATED                                            0
  OR10G8 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10G8 MUTATED                                               0
  OR10G8 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10G8 MUTATED                                0
  OR10G8 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10G8 MUTATED                                    0
  OR10G8 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10G8 MUTATED                              0                             1
  OR10G8 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10G8 MUTATED                                               0
  OR10G8 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR10G8 MUTATED                                   0
  OR10G8 WILD-TYPE                                 2
D134V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10G8 MUTATED     3   3   1   1
  OR10G8 WILD-TYPE  38 105  13   7
D134V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR10G8 MUTATED    6  0     2
  OR10G8 WILD-TYPE 89 37    33
D134V7, multiclass
       clus
vv      OR10G8 MUTATED OR10G8 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  OR10G8 MUTATED     8   0   0
  OR10G8 WILD-TYPE 129   9  22
D134V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR10G8 MUTATED    6  0   2  0
  OR10G8 WILD-TYPE 82 33  37  9
D134V9, multiclass
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  I                6               82
  II               0               33
  III              2               37
  IV               0                9
D134V10, binary
                  cls
clus                 0   1
  OR10G8 MUTATED     1   7
  OR10G8 WILD-TYPE  15 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      1    7
  OR10G8 WILD-TYPE   15  149
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               1               15
  YES              7              149
D134V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10G8 MUTATED                                             5
  OR10G8 WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10G8 MUTATED                                        0              2
  OR10G8 WILD-TYPE                                     46             26
                  vv
clus               LIFELONG NON-SMOKER
  OR10G8 MUTATED                     0
  OR10G8 WILD-TYPE                  24
D134V12, multiclass
                                             clus
vv                                            OR10G8 MUTATED OR10G8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D134V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR10G8 MUTATED    3  0  1  2
  OR10G8 WILD-TYPE 99  5  3  8
D134V14, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  R0              3               99
  R1              0                5
  R2              1                3
  RX              2                8

Clustering(135) Variable = OR51I1 MUTATION ANALYSIS
D135V1, survival
                  sevent
clus2               0  1
  OR51I1 MUTATED    5  1
  OR51I1 WILD-TYPE 94 49
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              143 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               1               49 
$`OR51I1 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-3918 TCGA-49-4514 TCGA-50-5933 TCGA-55-6712 
       30.02        26.01         6.44        43.20        77.88         0.79 

$`OR51I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR51I1 MUTATED OR51I1 WILD-TYPE 
            0.79             0.07 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
           77.88            85.32 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
          28.015           13.150 
[1] "0.8 - 77.9 (28.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
[1] "hr=" "4.1"
D135V2, continuous
D135V3, binary
                  cls
clus                0  1
  OR51I1 MUTATED    3  3
  OR51I1 WILD-TYPE 90 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I1 MUTATED      3    3
  OR51I1 WILD-TYPE   90   76
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D135V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR51I1 MUTATED                            0                                 2
  OR51I1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR51I1 MUTATED                                                    3
  OR51I1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR51I1 MUTATED                                            0
  OR51I1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR51I1 MUTATED                                               0
  OR51I1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR51I1 MUTATED                                0
  OR51I1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR51I1 MUTATED                                    0
  OR51I1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR51I1 MUTATED                              0                             1
  OR51I1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR51I1 MUTATED                                               0
  OR51I1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR51I1 MUTATED                                   0
  OR51I1 WILD-TYPE                                 2
D135V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR51I1 MUTATED     2   2   1   1
  OR51I1 WILD-TYPE  39 106  13   7
D135V6, multiclass
    clus
vv   OR51I1 MUTATED OR51I1 WILD-TYPE
  T1              2               39
  T2              2              106
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR51I1 MUTATED    3  2     1
  OR51I1 WILD-TYPE 92 35    34
D135V7, multiclass
       clus
vv      OR51I1 MUTATED OR51I1 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR51I1 MUTATED     5   0   1
  OR51I1 WILD-TYPE 132   9  21
D135V8, multiclass
    clus
vv   OR51I1 MUTATED OR51I1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR51I1 MUTATED    2  2   1  0
  OR51I1 WILD-TYPE 86 31  38  9
D135V9, multiclass
     clus
vv    OR51I1 MUTATED OR51I1 WILD-TYPE
  I                2               86
  II               2               31
  III              1               38
  IV               0                9
D135V10, binary
                  cls
clus                 0   1
  OR51I1 MUTATED     1   5
  OR51I1 WILD-TYPE  15 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I1 MUTATED      1    5
  OR51I1 WILD-TYPE   15  151
     clus
vv    OR51I1 MUTATED OR51I1 WILD-TYPE
  NO               1               15
  YES              5              151
D135V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR51I1 MUTATED                                             3
  OR51I1 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR51I1 MUTATED                                        2              0
  OR51I1 WILD-TYPE                                     44             28
                  vv
clus               LIFELONG NON-SMOKER
  OR51I1 MUTATED                     0
  OR51I1 WILD-TYPE                  24
D135V12, multiclass
                                             clus
vv                                            OR51I1 MUTATED OR51I1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D135V13, continuous
                  vv
clus                R0  R1  R2  RX
  OR51I1 MUTATED     2   1   0   1
  OR51I1 WILD-TYPE 100   4   4   9
D135V14, multiclass
    clus
vv   OR51I1 MUTATED OR51I1 WILD-TYPE
  R0              2              100
  R1              1                4
  R2              0                4
  RX              1                9

Clustering(136) Variable = GPR101 MUTATION ANALYSIS
D136V1, survival
                  sevent
clus2               0  1
  GPR101 MUTATED    5  2
  GPR101 WILD-TYPE 94 48
  GPR101 MUTATED GPR101 WILD-TYPE 
               7              142 
  GPR101 MUTATED GPR101 WILD-TYPE 
               2               48 
$`GPR101 MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 TCGA-44-6776 TCGA-44-6777 
       37.02        14.93        30.02        26.01        63.72        32.45 
TCGA-55-1592 
       23.05 

$`GPR101 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GPR101 MUTATED GPR101 WILD-TYPE 
           14.93             0.07 
  GPR101 MUTATED GPR101 WILD-TYPE 
           63.72            85.32 
  GPR101 MUTATED GPR101 WILD-TYPE 
          30.020           12.825 
[1] "14.9 - 63.7 (30.0)" "0.1 - 85.3 (12.8)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
[1] "hr=" "2"  
D136V2, continuous
D136V3, binary
                  cls
clus                0  1
  GPR101 MUTATED    6  3
  GPR101 WILD-TYPE 87 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      6    3
  GPR101 WILD-TYPE   87   76
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D136V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR101 MUTATED                            0                                 5
  GPR101 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR101 MUTATED                                                    4
  GPR101 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR101 MUTATED                                            0
  GPR101 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR101 MUTATED                                               0
  GPR101 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR101 MUTATED                                0
  GPR101 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR101 MUTATED                                    0
  GPR101 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR101 MUTATED                              0                             0
  GPR101 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR101 MUTATED                                               0
  GPR101 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  GPR101 MUTATED                                   0
  GPR101 WILD-TYPE                                 2
D136V5, multiclass
                  vv
clus                T1  T2  T3  T4
  GPR101 MUTATED     1   6   2   0
  GPR101 WILD-TYPE  40 102  12   8
D136V6, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  T1              1               40
  T2              6              102
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  GPR101 MUTATED    7  1     0
  GPR101 WILD-TYPE 88 36    35
D136V7, multiclass
       clus
vv      GPR101 MUTATED GPR101 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  GPR101 MUTATED     6   0   3
  GPR101 WILD-TYPE 131   9  19
D136V8, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              3               19
                  vv
clus                I II III IV
  GPR101 MUTATED    6  3   0  0
  GPR101 WILD-TYPE 82 30  39  9
D136V9, multiclass
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  I                6               82
  II               3               30
  III              0               39
  IV               0                9
D136V10, binary
                  cls
clus                 0   1
  GPR101 MUTATED     1   8
  GPR101 WILD-TYPE  15 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      1    8
  GPR101 WILD-TYPE   15  148
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  NO               1               15
  YES              8              148
D136V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GPR101 MUTATED                                             8
  GPR101 WILD-TYPE                                          54
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GPR101 MUTATED                                        0              1
  GPR101 WILD-TYPE                                     46             27
                  vv
clus               LIFELONG NON-SMOKER
  GPR101 MUTATED                     0
  GPR101 WILD-TYPE                  24
D136V12, multiclass
                                             clus
vv                                            GPR101 MUTATED GPR101 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D136V13, continuous
                  vv
clus               R0 R1 R2 RX
  GPR101 MUTATED    5  1  0  1
  GPR101 WILD-TYPE 97  4  4  9
D136V14, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  R0              5               97
  R1              1                4
  R2              0                4
  RX              1                9

Clustering(137) Variable = IRX1 MUTATION ANALYSIS
D137V1, survival
                sevent
clus2             0  1
  IRX1 MUTATED    3  2
  IRX1 WILD-TYPE 96 48
  IRX1 MUTATED IRX1 WILD-TYPE 
             5            144 
  IRX1 MUTATED IRX1 WILD-TYPE 
             2             48 
$`IRX1 MUTATED`
TCGA-44-6777 TCGA-55-1592 TCGA-55-1596 TCGA-67-6217 TCGA-91-6831 
       32.45        23.05        45.17        13.87         1.28 

$`IRX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.15         0.36 

  IRX1 MUTATED IRX1 WILD-TYPE 
          1.28           0.07 
  IRX1 MUTATED IRX1 WILD-TYPE 
         45.17          85.32 
  IRX1 MUTATED IRX1 WILD-TYPE 
         23.05          13.15 
[1] "1.3 - 45.2 (23.1)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
[1] "hr=" "1.1"
D137V2, continuous
D137V3, binary
                cls
clus              0  1
  IRX1 MUTATED    2  5
  IRX1 WILD-TYPE 91 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      2    5
  IRX1 WILD-TYPE   91   74
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  FEMALE            2             91
  MALE              5             74
D137V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  IRX1 MUTATED                            0                                 2
  IRX1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IRX1 MUTATED                                                    5
  IRX1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IRX1 MUTATED                                            0
  IRX1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IRX1 MUTATED                                               0
  IRX1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  IRX1 MUTATED                                0
  IRX1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  IRX1 MUTATED                                    0
  IRX1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IRX1 MUTATED                              0                             0
  IRX1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IRX1 MUTATED                                               0
  IRX1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  IRX1 MUTATED                                   0
  IRX1 WILD-TYPE                                 2
D137V5, multiclass
                vv
clus              T1  T2  T3  T4
  IRX1 MUTATED     1   6   0   0
  IRX1 WILD-TYPE  40 102  14   8
D137V6, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  T1            1             40
  T2            6            102
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  IRX1 MUTATED    3  3     0
  IRX1 WILD-TYPE 92 34    35
D137V7, multiclass
       clus
vv      IRX1 MUTATED IRX1 WILD-TYPE
  N0               3             92
  N1               3             34
  N2+N3            0             35
                vv
clus              M0  M1  MX
  IRX1 MUTATED     5   0   2
  IRX1 WILD-TYPE 132   9  20
D137V8, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
                vv
clus              I II III IV
  IRX1 MUTATED    4  3   0  0
  IRX1 WILD-TYPE 84 30  39  9
D137V9, multiclass
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  I              4             84
  II             3             30
  III            0             39
  IV             0              9
D137V10, binary
                cls
clus               0   1
  IRX1 MUTATED     1   6
  IRX1 WILD-TYPE  15 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      1    6
  IRX1 WILD-TYPE   15  150
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  NO             1             15
  YES            6            150
D137V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  IRX1 MUTATED                                             3
  IRX1 WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  IRX1 MUTATED                                        2              2
  IRX1 WILD-TYPE                                     44             26
                vv
clus             LIFELONG NON-SMOKER
  IRX1 MUTATED                     0
  IRX1 WILD-TYPE                  24
D137V12, multiclass
                                             clus
vv                                            IRX1 MUTATED IRX1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D137V13, continuous
                vv
clus             R0 R1 R2 RX
  IRX1 MUTATED    4  0  0  1
  IRX1 WILD-TYPE 98  5  4  9
D137V14, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  R0            4             98
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(138) Variable = STAC3 MUTATION ANALYSIS
D138V1, survival
                 sevent
clus2              0  1
  STAC3 MUTATED    1  2
  STAC3 WILD-TYPE 98 48
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             146 
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              48 
$`STAC3 MUTATED`
TCGA-05-4396 TCGA-05-4434 TCGA-91-6836 
        9.96        15.02         0.36 

$`STAC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  STAC3 MUTATED STAC3 WILD-TYPE 
           0.36            0.07 
  STAC3 MUTATED STAC3 WILD-TYPE 
          15.02           85.32 
  STAC3 MUTATED STAC3 WILD-TYPE 
           9.96           13.94 
[1] "0.4 - 15.0 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
[1] "hr=" "6.3"
D138V2, continuous
D138V3, binary
                 cls
clus               0  1
  STAC3 MUTATED    2  1
  STAC3 WILD-TYPE 91 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      2    1
  STAC3 WILD-TYPE   91   78
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  FEMALE             2              91
  MALE               1              78
D138V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STAC3 MUTATED                            0                                 2
  STAC3 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STAC3 MUTATED                                                    1
  STAC3 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STAC3 MUTATED                                            0
  STAC3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STAC3 MUTATED                                0
  STAC3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                                    0
  STAC3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                              0                             0
  STAC3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  STAC3 MUTATED                                   0
  STAC3 WILD-TYPE                                 2
D138V5, multiclass
                 vv
clus               T1  T2  T3  T4
  STAC3 MUTATED     0   1   0   2
  STAC3 WILD-TYPE  41 107  14   6
D138V6, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  T1             0              41
  T2             1             107
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  STAC3 MUTATED    1  2     0
  STAC3 WILD-TYPE 94 35    35
D138V7, multiclass
       clus
vv      STAC3 MUTATED STAC3 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  STAC3 MUTATED     1   1   1
  STAC3 WILD-TYPE 136   8  21
D138V8, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  M0             1             136
  M1             1               8
  MX             1              21
                 vv
clus               I II III IV
  STAC3 MUTATED    1  0   1  1
  STAC3 WILD-TYPE 87 33  38  8
D138V9, multiclass
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  I               1              87
  II              0              33
  III             1              38
  IV              1               8
D138V10, binary
                 cls
clus                0   1
  STAC3 MUTATED     0   3
  STAC3 WILD-TYPE  16 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      0    3
  STAC3 WILD-TYPE   16  153
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  NO              0              16
  YES             3             153
D138V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  STAC3 MUTATED                                             0
  STAC3 WILD-TYPE                                          62
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  STAC3 MUTATED                                        1              2
  STAC3 WILD-TYPE                                     45             26
                 vv
clus              LIFELONG NON-SMOKER
  STAC3 MUTATED                     0
  STAC3 WILD-TYPE                  24
D138V12, multiclass
                                             clus
vv                                            STAC3 MUTATED STAC3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             0              62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D138V13, continuous
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  STAC3 MUTATED     1   0   1   0
  STAC3 WILD-TYPE 101   5   3  10
D138V14, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             119 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-3615      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-38-4627      TCGA-38-4628 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4630      TCGA-38-4631      TCGA-38-4632 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2655      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-6144      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6744 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5055      TCGA-50-5066      TCGA-55-1592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-55-5899      TCGA-64-1676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3770      TCGA-67-3771      TCGA-67-3773 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-4679      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 

Clustering(139) Variable = BCHE MUTATION ANALYSIS
D139V1, survival
                sevent
clus2             0  1
  BCHE MUTATED    5  2
  BCHE WILD-TYPE 94 48
  BCHE MUTATED BCHE WILD-TYPE 
             7            142 
  BCHE MUTATED BCHE WILD-TYPE 
             2             48 
$`BCHE MUTATED`
TCGA-44-2662 TCGA-44-2668 TCGA-44-3398 TCGA-50-5931 TCGA-50-6590 TCGA-64-5781 
       15.78         8.09         8.32         8.78        42.31        39.52 
TCGA-64-5815 
        7.33 

$`BCHE WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3918 
       17.39         3.39        13.15         3.19        10.22         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-67-3770 
       37.02        83.84         0.10        30.44        16.67         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  BCHE MUTATED BCHE WILD-TYPE 
          7.33           0.07 
  BCHE MUTATED BCHE WILD-TYPE 
         42.31          85.32 
  BCHE MUTATED BCHE WILD-TYPE 
          8.78          13.94 
[1] "7.3 - 42.3 (8.8)"  "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
[1] "hr=" "1"  
D139V2, continuous
D139V3, binary
                cls
clus              0  1
  BCHE MUTATED    4  5
  BCHE WILD-TYPE 89 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      4    5
  BCHE WILD-TYPE   89   74
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            4             89
  MALE              5             74
D139V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BCHE MUTATED                            0                                 2
  BCHE WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BCHE MUTATED                                                    7
  BCHE WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BCHE MUTATED                                            0
  BCHE WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BCHE MUTATED                                               0
  BCHE WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BCHE MUTATED                                0
  BCHE WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BCHE MUTATED                                    0
  BCHE WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BCHE MUTATED                              0                             0
  BCHE WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BCHE MUTATED                                               0
  BCHE WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  BCHE MUTATED                                   0
  BCHE WILD-TYPE                                 2
D139V5, multiclass
                vv
clus              T1  T2  T3  T4
  BCHE MUTATED     1   7   1   0
  BCHE WILD-TYPE  40 101  13   8
D139V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            1             40
  T2            7            101
  T3            1             13
  T4            0              8
                vv
clus             N0 N1 N2+N3
  BCHE MUTATED    7  1     1
  BCHE WILD-TYPE 88 36    34
D139V7, multiclass
       clus
vv      BCHE MUTATED BCHE WILD-TYPE
  N0               7             88
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  BCHE MUTATED     8   1   0
  BCHE WILD-TYPE 129   8  22
D139V8, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  M0            8            129
  M1            1              8
  MX            0             22
                vv
clus              I II III IV
  BCHE MUTATED    7  1   0  1
  BCHE WILD-TYPE 81 32  39  8
D139V9, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              7             81
  II             1             32
  III            0             39
  IV             1              8
D139V10, binary
                cls
clus               0   1
  BCHE MUTATED     0   9
  BCHE WILD-TYPE  16 147
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      0    9
  BCHE WILD-TYPE   16  147
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             0             16
  YES            9            147
D139V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BCHE MUTATED                                             6
  BCHE WILD-TYPE                                          56
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BCHE MUTATED                                        2              0
  BCHE WILD-TYPE                                     44             28
                vv
clus             LIFELONG NON-SMOKER
  BCHE MUTATED                     0
  BCHE WILD-TYPE                  24
D139V12, multiclass
                                             clus
vv                                            BCHE MUTATED BCHE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D139V13, continuous
                vv
clus             R0 R1 R2 RX
  BCHE MUTATED    6  0  0  1
  BCHE WILD-TYPE 96  5  4  9
D139V14, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  R0            6             96
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(140) Variable = CNGA2 MUTATION ANALYSIS
D140V1, survival
                 sevent
clus2              0  1
  CNGA2 MUTATED    6  3
  CNGA2 WILD-TYPE 93 47
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              9             140 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              3              47 
$`CNGA2 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-05-4427 TCGA-05-4430 TCGA-49-6742 TCGA-50-5045 
        9.96        29.95        26.01        25.02        15.02        71.47 
TCGA-55-1592 TCGA-64-1676 TCGA-67-3771 
       23.05        56.81         1.97 

$`CNGA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       30.02        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNGA2 MUTATED CNGA2 WILD-TYPE 
           1.97            0.07 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          71.47           85.32 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          25.02           13.07 
[1] "2.0 - 71.5 (25.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
[1] "hr=" "1.6"
D140V2, continuous
D140V3, binary
                 cls
clus               0  1
  CNGA2 MUTATED    4  7
  CNGA2 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      4    7
  CNGA2 WILD-TYPE   89   72
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D140V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CNGA2 MUTATED                            0                                 6
  CNGA2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNGA2 MUTATED                                                    4
  CNGA2 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CNGA2 MUTATED                                            0
  CNGA2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CNGA2 MUTATED                                0
  CNGA2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                                    0
  CNGA2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                              0                             0
  CNGA2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  CNGA2 MUTATED                                   1
  CNGA2 WILD-TYPE                                 1
D140V5, multiclass
                 vv
clus               T1  T2  T3  T4
  CNGA2 MUTATED     3   7   0   1
  CNGA2 WILD-TYPE  38 101  14   7
D140V6, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  CNGA2 MUTATED    6  5     0
  CNGA2 WILD-TYPE 89 32    35
D140V7, multiclass
       clus
vv      CNGA2 MUTATED CNGA2 WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  CNGA2 MUTATED    10   0   1
  CNGA2 WILD-TYPE 127   9  21
D140V8, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  CNGA2 MUTATED    7  3   1  0
  CNGA2 WILD-TYPE 81 30  38  9
D140V9, multiclass
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  I               7              81
  II              3              30
  III             1              38
  IV              0               9
D140V10, binary
                 cls
clus                0   1
  CNGA2 MUTATED     1  10
  CNGA2 WILD-TYPE  15 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   15  146
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              15
  YES            10             146
D140V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CNGA2 MUTATED                                             5
  CNGA2 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CNGA2 MUTATED                                        3              2
  CNGA2 WILD-TYPE                                     43             26
                 vv
clus              LIFELONG NON-SMOKER
  CNGA2 MUTATED                     0
  CNGA2 WILD-TYPE                  24
D140V12, multiclass
                                             clus
vv                                            CNGA2 MUTATED CNGA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D140V13, continuous
                 vv
clus              R0 R1 R2 RX
  CNGA2 MUTATED    8  0  0  1
  CNGA2 WILD-TYPE 94  5  4  9
D140V14, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(141) Variable = FTSJD1 MUTATION ANALYSIS
D141V1, survival
                  sevent
clus2               0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 95 48
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              143 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               48 
$`FTSJD1 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4625 TCGA-44-3398 TCGA-44-4112 TCGA-73-4658 
        9.96        29.95        47.61         8.32         4.60        52.57 

$`FTSJD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09        10.22         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
            4.60             0.07 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
           52.57            85.32 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
          19.955           13.870 
[1] "4.6 - 52.6 (20.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
[1] "hr=" "1.5"
D141V2, continuous
D141V3, binary
                  cls
clus                0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      4    2
  FTSJD1 WILD-TYPE   89   77
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D141V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FTSJD1 MUTATED                            0                                 2
  FTSJD1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FTSJD1 MUTATED                                                    4
  FTSJD1 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FTSJD1 MUTATED                                            0
  FTSJD1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FTSJD1 MUTATED                                0
  FTSJD1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                                    0
  FTSJD1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                              0                             0
  FTSJD1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  FTSJD1 MUTATED                                   0
  FTSJD1 WILD-TYPE                                 2
D141V5, multiclass
                  vv
clus                T1  T2  T3  T4
  FTSJD1 MUTATED     1   4   0   1
  FTSJD1 WILD-TYPE  40 104  14   7
D141V6, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  FTSJD1 MUTATED    5  1     0
  FTSJD1 WILD-TYPE 90 36    35
D141V7, multiclass
       clus
vv      FTSJD1 MUTATED FTSJD1 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  FTSJD1 MUTATED     6   0   0
  FTSJD1 WILD-TYPE 131   9  22
D141V8, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  FTSJD1 MUTATED    5  0   1  0
  FTSJD1 WILD-TYPE 83 33  38  9
D141V9, multiclass
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D141V10, binary
                  cls
clus                 0   1
  FTSJD1 MUTATED     0   6
  FTSJD1 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      0    6
  FTSJD1 WILD-TYPE   16  150
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               0               16
  YES              6              150
D141V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FTSJD1 MUTATED                                             1
  FTSJD1 WILD-TYPE                                          61
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FTSJD1 MUTATED                                        3              2
  FTSJD1 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  FTSJD1 MUTATED                     0
  FTSJD1 WILD-TYPE                  24
D141V12, multiclass
                                             clus
vv                                            FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D141V13, continuous
                  vv
clus               R0 R1 R2 RX
  FTSJD1 MUTATED    6  0  0  0
  FTSJD1 WILD-TYPE 96  5  4 10
D141V14, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  R0              6               96
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(142) Variable = MAGEC2 MUTATION ANALYSIS
D142V1, survival
                  sevent
clus2               0  1
  MAGEC2 MUTATED    3  3
  MAGEC2 WILD-TYPE 96 47
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               6              143 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               3               47 
$`MAGEC2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-44-3918 TCGA-50-5045 TCGA-50-5051 TCGA-91-6829 
        9.96        26.01         6.44        71.47        14.96        41.33 

$`MAGEC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            6.44             0.07 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
           71.47            85.32 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
          20.485           13.150 
[1] "6.4 - 71.5 (20.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
[1] "hr=" "1"  
D142V2, continuous
D142V3, binary
                  cls
clus                0  1
  MAGEC2 MUTATED    5  3
  MAGEC2 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      5    3
  MAGEC2 WILD-TYPE   88   76
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D142V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MAGEC2 MUTATED                            0                                 2
  MAGEC2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MAGEC2 MUTATED                                                    5
  MAGEC2 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MAGEC2 MUTATED                                            0
  MAGEC2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MAGEC2 MUTATED                                               1
  MAGEC2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  MAGEC2 MUTATED                                0
  MAGEC2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  MAGEC2 MUTATED                                    0
  MAGEC2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MAGEC2 MUTATED                              0                             0
  MAGEC2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MAGEC2 MUTATED                                               0
  MAGEC2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  MAGEC2 MUTATED                                   0
  MAGEC2 WILD-TYPE                                 2
D142V5, multiclass
                  vv
clus                T1  T2  T3  T4
  MAGEC2 MUTATED     1   5   1   1
  MAGEC2 WILD-TYPE  40 103  13   7
D142V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  MAGEC2 MUTATED    3  4     1
  MAGEC2 WILD-TYPE 92 33    34
D142V7, multiclass
       clus
vv      MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0                 3               92
  N1                 4               33
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  MAGEC2 MUTATED     6   0   2
  MAGEC2 WILD-TYPE 131   9  20
D142V8, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
                  vv
clus                I II III IV
  MAGEC2 MUTATED    3  3   2  0
  MAGEC2 WILD-TYPE 85 30  37  9
D142V9, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  I                3               85
  II               3               30
  III              2               37
  IV               0                9
D142V10, binary
                  cls
clus                 0   1
  MAGEC2 MUTATED     2   6
  MAGEC2 WILD-TYPE  14 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      2    6
  MAGEC2 WILD-TYPE   14  150
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               2               14
  YES              6              150
D142V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MAGEC2 MUTATED                                             3
  MAGEC2 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MAGEC2 MUTATED                                        3              1
  MAGEC2 WILD-TYPE                                     43             27
                  vv
clus               LIFELONG NON-SMOKER
  MAGEC2 MUTATED                     0
  MAGEC2 WILD-TYPE                  24
D142V12, multiclass
                                             clus
vv                                            MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D142V13, continuous
                  vv
clus               R0 R1 R2 RX
  MAGEC2 MUTATED    5  0  0  0
  MAGEC2 WILD-TYPE 97  5  4 10
D142V14, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  R0              5               97
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(143) Variable = OR10T2 MUTATION ANALYSIS
D143V1, survival
                  sevent
clus2               0  1
  OR10T2 MUTATED    5  2
  OR10T2 WILD-TYPE 94 48
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              142 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               2               48 
$`OR10T2 MUTATED`
TCGA-05-4424 TCGA-05-4432 TCGA-44-2659 TCGA-44-6145 TCGA-49-4507 TCGA-55-1592 
       30.02        25.02        17.39         3.35         8.81        23.05 
TCGA-64-5781 
       39.52 

$`OR10T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        29.95        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10T2 MUTATED OR10T2 WILD-TYPE 
            3.35             0.07 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           39.52            85.32 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           23.05            13.15 
[1] "3.4 - 39.5 (23.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
[1] "hr=" "1.1"
D143V2, continuous
D143V3, binary
                  cls
clus                0  1
  OR10T2 MUTATED    4  3
  OR10T2 WILD-TYPE 89 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      4    3
  OR10T2 WILD-TYPE   89   76
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D143V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10T2 MUTATED                            0                                 3
  OR10T2 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10T2 MUTATED                                                    4
  OR10T2 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10T2 MUTATED                                            0
  OR10T2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10T2 MUTATED                                               0
  OR10T2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10T2 MUTATED                                0
  OR10T2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10T2 MUTATED                                    0
  OR10T2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10T2 MUTATED                              0                             0
  OR10T2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10T2 MUTATED                                               0
  OR10T2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR10T2 MUTATED                                   0
  OR10T2 WILD-TYPE                                 2
D143V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10T2 MUTATED     2   3   2   0
  OR10T2 WILD-TYPE  39 105  12   8
D143V6, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR10T2 MUTATED    4  3     0
  OR10T2 WILD-TYPE 91 34    35
D143V7, multiclass
       clus
vv      OR10T2 MUTATED OR10T2 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR10T2 MUTATED     7   0   0
  OR10T2 WILD-TYPE 130   9  22
D143V8, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR10T2 MUTATED    3  3   1  0
  OR10T2 WILD-TYPE 85 30  38  9
D143V9, multiclass
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D143V10, binary
                  cls
clus                 0   1
  OR10T2 MUTATED     1   6
  OR10T2 WILD-TYPE  15 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      1    6
  OR10T2 WILD-TYPE   15  150
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  NO               1               15
  YES              6              150
D143V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10T2 MUTATED                                             6
  OR10T2 WILD-TYPE                                          56
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10T2 MUTATED                                        0              1
  OR10T2 WILD-TYPE                                     46             27
                  vv
clus               LIFELONG NON-SMOKER
  OR10T2 MUTATED                     0
  OR10T2 WILD-TYPE                  24
D143V12, multiclass
                                             clus
vv                                            OR10T2 MUTATED OR10T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D143V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR10T2 MUTATED    5  1  0  0
  OR10T2 WILD-TYPE 97  4  4 10
D143V14, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  R0              5               97
  R1              1                4
  R2              0                4
  RX              0               10

Clustering(144) Variable = OR4L1 MUTATION ANALYSIS
D144V1, survival
                 sevent
clus2              0  1
  OR4L1 MUTATED    3  2
  OR4L1 WILD-TYPE 96 48
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              5             144 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              2              48 
$`OR4L1 MUTATED`
TCGA-05-4396 TCGA-44-3918 TCGA-44-5643 TCGA-44-6777 TCGA-91-6836 
        9.96         6.44         3.48        32.45         0.36 

$`OR4L1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR4L1 MUTATED OR4L1 WILD-TYPE 
           0.36            0.07 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
          32.45           85.32 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
           6.44           14.04 
[1] "0.4 - 32.5 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
[1] "hr=" "2.8"
D144V2, continuous
D144V3, binary
                 cls
clus               0  1
  OR4L1 MUTATED    4  3
  OR4L1 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      4    3
  OR4L1 WILD-TYPE   89   76
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D144V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4L1 MUTATED                            0                                 2
  OR4L1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4L1 MUTATED                                                    5
  OR4L1 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4L1 MUTATED                                            0
  OR4L1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4L1 MUTATED                                               0
  OR4L1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR4L1 MUTATED                                0
  OR4L1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4L1 MUTATED                                    0
  OR4L1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4L1 MUTATED                              0                             0
  OR4L1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4L1 MUTATED                                               0
  OR4L1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4L1 MUTATED                                   0
  OR4L1 WILD-TYPE                                 2
D144V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR4L1 MUTATED     1   4   1   1
  OR4L1 WILD-TYPE  40 104  13   7
D144V6, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  T1             1              40
  T2             4             104
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR4L1 MUTATED    4  1     1
  OR4L1 WILD-TYPE 91 36    34
D144V7, multiclass
       clus
vv      OR4L1 MUTATED OR4L1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR4L1 MUTATED     4   0   3
  OR4L1 WILD-TYPE 133   9  19
D144V8, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             3              19
                 vv
clus               I II III IV
  OR4L1 MUTATED    4  1   2  0
  OR4L1 WILD-TYPE 84 32  37  9
D144V9, multiclass
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D144V10, binary
                 cls
clus                0   1
  OR4L1 MUTATED     2   5
  OR4L1 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      2    5
  OR4L1 WILD-TYPE   14  151
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  NO              2              14
  YES             5             151
D144V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4L1 MUTATED                                             2
  OR4L1 WILD-TYPE                                          60
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4L1 MUTATED                                        2              3
  OR4L1 WILD-TYPE                                     44             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4L1 MUTATED                     0
  OR4L1 WILD-TYPE                  24
D144V12, multiclass
                                             clus
vv                                            OR4L1 MUTATED OR4L1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D144V13, continuous
                 vv
clus              R0 R1 R2 RX
  OR4L1 MUTATED    3  0  0  1
  OR4L1 WILD-TYPE 99  5  4  9
D144V14, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  R0             3              99
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(145) Variable = RIT2 MUTATION ANALYSIS
D145V1, survival
                sevent
clus2             0  1
  RIT2 MUTATED    2  1
  RIT2 WILD-TYPE 97 49
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            146 
  RIT2 MUTATED RIT2 WILD-TYPE 
             1             49 
$`RIT2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-49-6742 
        9.96        26.01        15.02 

$`RIT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  RIT2 MUTATED RIT2 WILD-TYPE 
          9.96           0.07 
  RIT2 MUTATED RIT2 WILD-TYPE 
         26.01          85.32 
  RIT2 MUTATED RIT2 WILD-TYPE 
         15.02          13.51 
[1] "10.0 - 26.0 (15.0)" "0.1 - 85.3 (13.5)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
[1] "hr=" "1.4"
D145V2, continuous
D145V3, binary
                cls
clus              0  1
  RIT2 MUTATED    1  2
  RIT2 WILD-TYPE 92 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      1    2
  RIT2 WILD-TYPE   92   77
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  FEMALE            1             92
  MALE              2             77
D145V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIT2 MUTATED                            0                                 2
  RIT2 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIT2 MUTATED                                                    0
  RIT2 WILD-TYPE                                                114
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIT2 MUTATED                                            0
  RIT2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIT2 MUTATED                                               0
  RIT2 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  RIT2 MUTATED                                0
  RIT2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  RIT2 MUTATED                                    0
  RIT2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIT2 MUTATED                              0                             0
  RIT2 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIT2 MUTATED                                               0
  RIT2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  RIT2 MUTATED                                   1
  RIT2 WILD-TYPE                                 1
D145V5, multiclass
                vv
clus              T1  T2  T3  T4
  RIT2 MUTATED     0   2   0   1
  RIT2 WILD-TYPE  41 106  14   7
D145V6, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  T1            0             41
  T2            2            106
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  RIT2 MUTATED    0  3     0
  RIT2 WILD-TYPE 95 34    35
D145V7, multiclass
       clus
vv      RIT2 MUTATED RIT2 WILD-TYPE
  N0               0             95
  N1               3             34
  N2+N3            0             35
                vv
clus              M0  M1  MX
  RIT2 MUTATED     2   0   1
  RIT2 WILD-TYPE 135   9  21
D145V8, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  M0            2            135
  M1            0              9
  MX            1             21
                vv
clus              I II III IV
  RIT2 MUTATED    0  2   1  0
  RIT2 WILD-TYPE 88 31  38  9
D145V9, multiclass
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  I              0             88
  II             2             31
  III            1             38
  IV             0              9
D145V10, binary
                cls
clus               0   1
  RIT2 MUTATED     0   3
  RIT2 WILD-TYPE  16 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      0    3
  RIT2 WILD-TYPE   16  153
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  NO             0             16
  YES            3            153
D145V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RIT2 MUTATED                                             1
  RIT2 WILD-TYPE                                          61
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RIT2 MUTATED                                        2              0
  RIT2 WILD-TYPE                                     44             28
                vv
clus             LIFELONG NON-SMOKER
  RIT2 MUTATED                     0
  RIT2 WILD-TYPE                  24
D145V12, multiclass
                                             clus
vv                                            RIT2 MUTATED RIT2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1             61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D145V13, continuous
[1] "Remove cluster labels:" "RIT2 MUTATED"          
clus
  RIT2 MUTATED RIT2 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4433 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5428 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4626     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2662     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6147 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  RIT2 MUTATED     2   0   0   0
  RIT2 WILD-TYPE 100   5   4  10
D145V14, multiclass
[1] "Remove cluster labels:" "RIT2 MUTATED"          
clus
  RIT2 MUTATED RIT2 WILD-TYPE 
             2            119 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4395 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4403 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4422     TCGA-05-4424 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4426     TCGA-05-4430     TCGA-05-4432 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-05-5429     TCGA-05-5715 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-3615     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-38-4627     TCGA-38-4628 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4629     TCGA-38-4630     TCGA-38-4631     TCGA-38-4632 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-2655     TCGA-44-2657     TCGA-44-2659 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-6144     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6775     TCGA-49-4486     TCGA-49-4487     TCGA-49-4488 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4501     TCGA-49-4505     TCGA-49-4506 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4507     TCGA-49-4510     TCGA-49-4514     TCGA-49-6744 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5055     TCGA-50-5066     TCGA-55-1592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1596     TCGA-55-5899     TCGA-64-1676 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-64-5774 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5775     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5815     TCGA-67-3770     TCGA-67-3771     TCGA-67-3773 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-4679     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4662 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-75-5122     TCGA-75-5125 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-5147     TCGA-75-6203 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-75-6205     TCGA-75-6206     TCGA-75-6207     TCGA-75-6211 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-75-6212     TCGA-80-5611     TCGA-86-6562 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 

Clustering(146) Variable = OR2T8 MUTATION ANALYSIS
D146V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    4  4
  OR2T8 WILD-TYPE 95 46
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             141 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              4              46 
$`OR2T8 MUTATED`
TCGA-05-4430 TCGA-38-4629 TCGA-44-2656 TCGA-49-4488 TCGA-49-4506 TCGA-50-5045 
       25.02        28.37        19.10        28.57        32.84        71.47 
TCGA-50-5049 TCGA-73-4668 
       48.82        15.35 

$`OR2T8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
          15.35            0.07 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          71.47           85.32 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          28.47           12.66 
[1] "15.3 - 71.5 (28.5)" "0.1 - 85.3 (12.7)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
[1] "hr=" "1.2"
D146V2, continuous
D146V3, binary
                 cls
clus               0  1
  OR2T8 MUTATED    5  3
  OR2T8 WILD-TYPE 88 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      5    3
  OR2T8 WILD-TYPE   88   76
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D146V4, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T8 MUTATED                            0                                 1
  OR2T8 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T8 MUTATED                                                    6
  OR2T8 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T8 MUTATED                                            0
  OR2T8 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T8 MUTATED                                               0
  OR2T8 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2T8 MUTATED                                0
  OR2T8 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T8 MUTATED                                    1
  OR2T8 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T8 MUTATED                              0                             0
  OR2T8 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T8 MUTATED                                               0
  OR2T8 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR2T8 MUTATED                                   0
  OR2T8 WILD-TYPE                                 2
D146V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2T8 MUTATED     1   6   1   0
  OR2T8 WILD-TYPE  40 102  13   8
D146V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR2T8 MUTATED    5  3     0
  OR2T8 WILD-TYPE 90 34    35
D146V7, multiclass
       clus
vv      OR2T8 MUTATED OR2T8 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR2T8 MUTATED     7   0   1
  OR2T8 WILD-TYPE 130   9  21
D146V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR2T8 MUTATED    5  3   0  0
  OR2T8 WILD-TYPE 83 30  39  9
D146V9, multiclass
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  I               5              83
  II              3              30
  III             0              39
  IV              0               9
D146V10, binary
                 cls
clus                0   1
  OR2T8 MUTATED     2   6
  OR2T8 WILD-TYPE  14 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      2    6
  OR2T8 WILD-TYPE   14  150
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              2              14
  YES             6             150
D146V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T8 MUTATED                                             4
  OR2T8 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T8 MUTATED                                        1              1
  OR2T8 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2T8 MUTATED                     0
  OR2T8 WILD-TYPE                  24
D146V12, multiclass
                                             clus
vv                                            OR2T8 MUTATED OR2T8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D146V13, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  OR2T8 MUTATED    4  1  0  0
  OR2T8 WILD-TYPE 98  4  4 10
D146V14, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  R0             4              98
  R1             1               4
  R2             0               4
  RX             0              10

Clustering(147) Variable = NPFFR2 MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2               0  1
  NPFFR2 MUTATED    7  0
  NPFFR2 WILD-TYPE 92 50
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               7              142 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               0               50 
$`NPFFR2 MUTATED`
TCGA-05-4405 TCGA-35-3615 TCGA-44-4112 TCGA-44-6776 TCGA-44-6778 TCGA-67-3774 
       20.05         0.46         4.60        63.72        36.49         0.59 
TCGA-73-4666 
       20.28 

$`NPFFR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
            0.46             0.07 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           63.72            85.32 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           20.05            13.51 
[1] "0.5 - 63.7 (20.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D147V2, continuous
D147V3, binary
                  cls
clus                0  1
  NPFFR2 MUTATED    6  4
  NPFFR2 WILD-TYPE 87 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      6    4
  NPFFR2 WILD-TYPE   87   75
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D147V4, continuous
[1] "Remove cluster labels:" "NPFFR2 MUTATED"        
clus
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NPFFR2 MUTATED                            0                                 3
  NPFFR2 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NPFFR2 MUTATED                                                    6
  NPFFR2 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NPFFR2 MUTATED                                            0
  NPFFR2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NPFFR2 MUTATED                                               0
  NPFFR2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  NPFFR2 MUTATED                                0
  NPFFR2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  NPFFR2 MUTATED                                    0
  NPFFR2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NPFFR2 MUTATED                              0                             1
  NPFFR2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NPFFR2 MUTATED                                               0
  NPFFR2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  NPFFR2 MUTATED                                   0
  NPFFR2 WILD-TYPE                                 2
D147V5, multiclass
                  vv
clus                T1  T2  T3  T4
  NPFFR2 MUTATED     4   5   1   0
  NPFFR2 WILD-TYPE  37 103  13   8
D147V6, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  NPFFR2 MUTATED    9  0     1
  NPFFR2 WILD-TYPE 86 37    34
D147V7, multiclass
       clus
vv      NPFFR2 MUTATED NPFFR2 WILD-TYPE
  N0                 9               86
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  NPFFR2 MUTATED     7   1   2
  NPFFR2 WILD-TYPE 130   8  20
D147V8, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              2               20
                  vv
clus                I II III IV
  NPFFR2 MUTATED    8  0   1  1
  NPFFR2 WILD-TYPE 80 33  38  8
D147V9, multiclass
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  I                8               80
  II               0               33
  III              1               38
  IV               1                8
D147V10, binary
                  cls
clus                 0   1
  NPFFR2 MUTATED     1   9
  NPFFR2 WILD-TYPE  15 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      1    9
  NPFFR2 WILD-TYPE   15  147
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  NO               1               15
  YES              9              147
D147V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NPFFR2 MUTATED                                             6
  NPFFR2 WILD-TYPE                                          56
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NPFFR2 MUTATED                                        3              0
  NPFFR2 WILD-TYPE                                     43             28
                  vv
clus               LIFELONG NON-SMOKER
  NPFFR2 MUTATED                     1
  NPFFR2 WILD-TYPE                  23
D147V12, multiclass
                                             clus
vv                                            NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D147V13, continuous
                  vv
clus               R0 R1 R2 RX
  NPFFR2 MUTATED    5  0  1  1
  NPFFR2 WILD-TYPE 97  5  3  9
D147V14, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  R0              5               97
  R1              0                5
  R2              1                3
  RX              1                9

Clustering(148) Variable = CHM MUTATION ANALYSIS
D148V1, survival
               sevent
clus2            0  1
  CHM MUTATED    1  3
  CHM WILD-TYPE 98 47
  CHM MUTATED CHM WILD-TYPE 
            4           145 
  CHM MUTATED CHM WILD-TYPE 
            3            47 
$`CHM MUTATED`
TCGA-50-5931 TCGA-50-6590 TCGA-64-5775 TCGA-73-4666 
        8.78        42.31         0.10        20.28 

$`CHM WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CHM MUTATED CHM WILD-TYPE 
         0.10          0.07 
  CHM MUTATED CHM WILD-TYPE 
        42.31         85.32 
  CHM MUTATED CHM WILD-TYPE 
        14.53         13.87 
[1] "0.1 - 42.3 (14.5)" "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
[1] "hr=" "2.8"
D148V2, continuous
D148V3, binary
               cls
clus             0  1
  CHM MUTATED    4  2
  CHM WILD-TYPE 89 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  CHM MUTATED      4    2
  CHM WILD-TYPE   89   77
        clus
vv       CHM MUTATED CHM WILD-TYPE
  FEMALE           4            89
  MALE             2            77
D148V4, continuous
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4662    TCGA-73-4668    TCGA-73-4676 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-75-5122 
"CHM WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CHM MUTATED                            0                                 0
  CHM WILD-TYPE                          2                                39
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CHM MUTATED                                                    5
  CHM WILD-TYPE                                                109
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CHM MUTATED                                            0
  CHM WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CHM MUTATED                                               0
  CHM WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  CHM MUTATED                                0
  CHM WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  CHM MUTATED                                    1                            0
  CHM WILD-TYPE                                  1                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  CHM MUTATED                               0
  CHM WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CHM MUTATED                                               0
  CHM WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  CHM MUTATED                                   0
  CHM WILD-TYPE                                 2
D148V5, multiclass
               vv
clus             T1  T2  T3  T4
  CHM MUTATED     1   4   0   1
  CHM WILD-TYPE  40 104  14   7
D148V6, multiclass
    clus
vv   CHM MUTATED CHM WILD-TYPE
  T1           1            40
  T2           4           104
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  CHM MUTATED    4  1     1
  CHM WILD-TYPE 91 36    34
D148V7, multiclass
       clus
vv      CHM MUTATED CHM WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           1            34
               vv
clus             M0  M1  MX
  CHM MUTATED     4   2   0
  CHM WILD-TYPE 133   7  22
D148V8, multiclass
    clus
vv   CHM MUTATED CHM WILD-TYPE
  M0           4           133
  M1           2             7
  MX           0            22
               vv
clus             I II III IV
  CHM MUTATED    2  1   1  2
  CHM WILD-TYPE 86 32  38  7
D148V9, multiclass
     clus
vv    CHM MUTATED CHM WILD-TYPE
  I             2            86
  II            1            32
  III           1            38
  IV            2             7
D148V10, binary
               cls
clus              0   1
  CHM MUTATED     1   5
  CHM WILD-TYPE  15 151
[1] "tbl2"
               cls
clus            [,1] [,2]
  CHM MUTATED      1    5
  CHM WILD-TYPE   15  151
     clus
vv    CHM MUTATED CHM WILD-TYPE
  NO            1            15
  YES           5           151
D148V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CHM MUTATED                                             3
  CHM WILD-TYPE                                          59
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CHM MUTATED                                        0              1
  CHM WILD-TYPE                                     46             27
               vv
clus            LIFELONG NON-SMOKER
  CHM MUTATED                     1
  CHM WILD-TYPE                  23
D148V12, multiclass
                                             clus
vv                                            CHM MUTATED CHM WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           3            59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0            46
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   1            23
D148V13, continuous
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-35-4122 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4494    TCGA-49-4505    TCGA-55-1592 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-91-6829 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6836 
"CHM WILD-TYPE" 
               vv
clus            R0 R1 R2 RX
  CHM MUTATED    3  0  0  1
  CHM WILD-TYPE 99  5  4  9
D148V14, multiclass
    clus
vv   CHM MUTATED CHM WILD-TYPE
  R0           3            99
  R1           0             5
  R2           0             4
  RX           1             9

Clustering(149) Variable = OR4D10 MUTATION ANALYSIS
D149V1, survival
                  sevent
clus2               0  1
  OR4D10 MUTATED    3  1
  OR4D10 WILD-TYPE 96 49
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               4              145 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               1               49 
$`OR4D10 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-50-5066 TCGA-91-6836 
        9.96        25.02         9.76         0.36 

$`OR4D10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  OR4D10 MUTATED OR4D10 WILD-TYPE 
            0.36             0.07 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
           25.02            85.32 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
            9.86            14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
[1] "hr=" "1.7"
D149V2, continuous
D149V3, binary
                  cls
clus                0  1
  OR4D10 MUTATED    2  3
  OR4D10 WILD-TYPE 91 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      2    3
  OR4D10 WILD-TYPE   91   76
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D149V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4D10 MUTATED                            0                                 4
  OR4D10 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4D10 MUTATED                                                    1
  OR4D10 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4D10 MUTATED                                            0
  OR4D10 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4D10 MUTATED                                               0
  OR4D10 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4D10 MUTATED                                0
  OR4D10 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4D10 MUTATED                                    0
  OR4D10 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4D10 MUTATED                              0                             0
  OR4D10 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4D10 MUTATED                                               0
  OR4D10 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4D10 MUTATED                                   0
  OR4D10 WILD-TYPE                                 2
D149V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4D10 MUTATED     0   4   0   1
  OR4D10 WILD-TYPE  41 104  14   7
D149V6, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR4D10 MUTATED    4  1     0
  OR4D10 WILD-TYPE 91 36    35
D149V7, multiclass
       clus
vv      OR4D10 MUTATED OR4D10 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR4D10 MUTATED     4   0   1
  OR4D10 WILD-TYPE 133   9  21
D149V8, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
                  vv
clus                I II III IV
  OR4D10 MUTATED    4  0   1  0
  OR4D10 WILD-TYPE 84 33  38  9
D149V9, multiclass
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  I                4               84
  II               0               33
  III              1               38
  IV               0                9
D149V10, binary
                  cls
clus                 0   1
  OR4D10 MUTATED     0   5
  OR4D10 WILD-TYPE  16 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      0    5
  OR4D10 WILD-TYPE   16  151
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  NO               0               16
  YES              5              151
D149V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4D10 MUTATED                                             2
  OR4D10 WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4D10 MUTATED                                        1              1
  OR4D10 WILD-TYPE                                     45             27
                  vv
clus               LIFELONG NON-SMOKER
  OR4D10 MUTATED                     1
  OR4D10 WILD-TYPE                  23
D149V12, multiclass
                                             clus
vv                                            OR4D10 MUTATED OR4D10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D149V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR4D10 MUTATED    3  0  0  1
  OR4D10 WILD-TYPE 99  5  4  9
D149V14, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  R0              3               99
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(150) Variable = OR5D13 MUTATION ANALYSIS
D150V1, survival
                  sevent
clus2               0  1
  OR5D13 MUTATED    2  2
  OR5D13 WILD-TYPE 97 48
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              145 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2               48 
$`OR5D13 MUTATED`
TCGA-35-4122 TCGA-50-5933 TCGA-50-6590 TCGA-67-6217 
        7.36        77.88        42.31        13.87 

$`OR5D13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5D13 MUTATED OR5D13 WILD-TYPE 
            7.36             0.07 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           77.88            85.32 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           28.09            13.15 
[1] "7.4 - 77.9 (28.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
[1] "hr=" "1.6"
D150V2, continuous
D150V3, binary
                  cls
clus                0  1
  OR5D13 MUTATED    2  2
  OR5D13 WILD-TYPE 91 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      2    2
  OR5D13 WILD-TYPE   91   77
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D150V4, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5D13 MUTATED                            0                                 0
  OR5D13 WILD-TYPE                          2                                39
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5D13 MUTATED                                                    4
  OR5D13 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5D13 MUTATED                                            0
  OR5D13 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5D13 MUTATED                                               0
  OR5D13 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR5D13 MUTATED                                0
  OR5D13 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5D13 MUTATED                                    0
  OR5D13 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5D13 MUTATED                              0                             0
  OR5D13 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5D13 MUTATED                                               0
  OR5D13 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5D13 MUTATED                                   0
  OR5D13 WILD-TYPE                                 2
D150V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR5D13 MUTATED     1   2   0   1
  OR5D13 WILD-TYPE  40 106  14   7
D150V6, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  T1              1               40
  T2              2              106
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR5D13 MUTATED    2  1     1
  OR5D13 WILD-TYPE 93 36    34
D150V7, multiclass
       clus
vv      OR5D13 MUTATED OR5D13 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR5D13 MUTATED     4   0   0
  OR5D13 WILD-TYPE 133   9  22
D150V8, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR5D13 MUTATED    2  1   1  0
  OR5D13 WILD-TYPE 86 32  38  9
D150V9, multiclass
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               0                9
D150V10, binary
                  cls
clus                 0   1
  OR5D13 MUTATED     1   3
  OR5D13 WILD-TYPE  15 153
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      1    3
  OR5D13 WILD-TYPE   15  153
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  NO               1               15
  YES              3              153
D150V11, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2              112 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4422       TCGA-05-4424 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4123 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4629 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-44-2655       TCGA-44-2656 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6148       TCGA-44-6774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4490 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5051 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5931       TCGA-50-5939       TCGA-50-5941 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5942       TCGA-55-1596       TCGA-55-6543       TCGA-64-1676 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-64-5774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5815       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6829       TCGA-91-6835       TCGA-91-6836 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5D13 MUTATED                                             2
  OR5D13 WILD-TYPE                                          60
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5D13 MUTATED                                        1              0
  OR5D13 WILD-TYPE                                     45             28
                  vv
clus               LIFELONG NON-SMOKER
  OR5D13 MUTATED                     0
  OR5D13 WILD-TYPE                  24
D150V12, multiclass
                                             clus
vv                                            OR5D13 MUTATED OR5D13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D150V13, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4123       TCGA-35-5375 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  OR5D13 MUTATED     2   0   0   0
  OR5D13 WILD-TYPE 100   5   4  10
D150V14, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2              119 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4422 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4425       TCGA-05-4426       TCGA-05-4427 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2657 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6767       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1596       TCGA-55-5899 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 

Clustering(151) Variable = FOXI1 MUTATION ANALYSIS
D151V1, survival
                 sevent
clus2              0  1
  FOXI1 MUTATED    4  3
  FOXI1 WILD-TYPE 95 47
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              7             142 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              3              47 
$`FOXI1 MUTATED`
TCGA-05-4382 TCGA-05-4426 TCGA-05-4430 TCGA-38-4629 TCGA-44-2657 TCGA-50-6590 
       19.92        26.01        25.02        28.37        13.15        42.31 
TCGA-50-6592 
       25.51 

$`FOXI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FOXI1 MUTATED FOXI1 WILD-TYPE 
          13.15            0.07 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
          42.31           85.32 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
         25.510          12.825 
[1] "13.2 - 42.3 (25.5)" "0.1 - 85.3 (12.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
[1] "hr=" "1.1"
D151V2, continuous
D151V3, binary
                 cls
clus               0  1
  FOXI1 MUTATED    4  4
  FOXI1 WILD-TYPE 89 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      4    4
  FOXI1 WILD-TYPE   89   75
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D151V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FOXI1 MUTATED                            0                                 3
  FOXI1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FOXI1 MUTATED                                                    4
  FOXI1 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FOXI1 MUTATED                                            0
  FOXI1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FOXI1 MUTATED                                               0
  FOXI1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FOXI1 MUTATED                                0
  FOXI1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FOXI1 MUTATED                                    0
  FOXI1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FOXI1 MUTATED                              0                             0
  FOXI1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FOXI1 MUTATED                                               1
  FOXI1 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  FOXI1 MUTATED                                   0
  FOXI1 WILD-TYPE                                 2
D151V5, multiclass
                 vv
clus               T1  T2  T3  T4
  FOXI1 MUTATED     0   7   1   0
  FOXI1 WILD-TYPE  41 101  13   8
D151V6, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  FOXI1 MUTATED    7  0     0
  FOXI1 WILD-TYPE 88 37    35
D151V7, multiclass
       clus
vv      FOXI1 MUTATED FOXI1 WILD-TYPE
  N0                7              88
  N1                0              37
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  FOXI1 MUTATED     8   0   0
  FOXI1 WILD-TYPE 129   9  22
D151V8, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  FOXI1 MUTATED    7  1   0  0
  FOXI1 WILD-TYPE 81 32  39  9
D151V9, multiclass
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  I               7              81
  II              1              32
  III             0              39
  IV              0               9
D151V10, binary
                 cls
clus                0   1
  FOXI1 MUTATED     0   8
  FOXI1 WILD-TYPE  16 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      0    8
  FOXI1 WILD-TYPE   16  148
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  NO              0              16
  YES             8             148
D151V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FOXI1 MUTATED                                             7
  FOXI1 WILD-TYPE                                          55
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FOXI1 MUTATED                                        1              0
  FOXI1 WILD-TYPE                                     45             28
                 vv
clus              LIFELONG NON-SMOKER
  FOXI1 MUTATED                     0
  FOXI1 WILD-TYPE                  24
D151V12, multiclass
                                             clus
vv                                            FOXI1 MUTATED FOXI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D151V13, continuous
[1] "Remove cluster labels:" "FOXI1 MUTATED"         
clus
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
                 vv
clus              R0 R1 R2 RX
  FOXI1 MUTATED    6  0  0  0
  FOXI1 WILD-TYPE 96  5  4 10
D151V14, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  R0             6              96
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(152) Variable = FAM47B MUTATION ANALYSIS
D152V1, survival
                  sevent
clus2               0  1
  FAM47B MUTATED    5  5
  FAM47B WILD-TYPE 94 45
  FAM47B MUTATED FAM47B WILD-TYPE 
              10              139 
  FAM47B MUTATED FAM47B WILD-TYPE 
               5               45 
$`FAM47B MUTATED`
TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 TCGA-38-4631 TCGA-38-4632 TCGA-49-4505 
       47.05        29.95        25.02        11.64        44.61        14.07 
TCGA-50-5045 TCGA-55-1594 TCGA-64-5775 TCGA-64-5778 
       71.47        38.73         0.10        30.44 

$`FAM47B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        35.28         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  FAM47B MUTATED FAM47B WILD-TYPE 
            0.10             0.07 
  FAM47B MUTATED FAM47B WILD-TYPE 
           71.47            85.32 
  FAM47B MUTATED FAM47B WILD-TYPE 
          30.195           12.990 
[1] "0.1 - 71.5 (30.2)" "0.1 - 85.3 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
[1] "hr=" "1.1"
D152V2, continuous
D152V3, binary
                  cls
clus                0  1
  FAM47B MUTATED    6  8
  FAM47B WILD-TYPE 87 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      6    8
  FAM47B WILD-TYPE   87   71
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  FEMALE              6               87
  MALE                8               71
D152V4, continuous
[1] "Remove cluster labels:" "FAM47B MUTATED"        
clus
  FAM47B MUTATED FAM47B WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM47B MUTATED                            0                                 4
  FAM47B WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM47B MUTATED                                                    8
  FAM47B WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM47B MUTATED                                            0
  FAM47B WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM47B MUTATED                                               1
  FAM47B WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FAM47B MUTATED                                0
  FAM47B WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM47B MUTATED                                    0
  FAM47B WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM47B MUTATED                              0                             1
  FAM47B WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM47B MUTATED                                               0
  FAM47B WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  FAM47B MUTATED                                   0
  FAM47B WILD-TYPE                                 2
D152V5, multiclass
                  vv
clus               T1 T2 T3 T4
  FAM47B MUTATED    0 10  2  2
  FAM47B WILD-TYPE 41 98 12  6
D152V6, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  T1              0               41
  T2             10               98
  T3              2               12
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  FAM47B MUTATED    6  5     3
  FAM47B WILD-TYPE 89 32    32
D152V7, multiclass
       clus
vv      FAM47B MUTATED FAM47B WILD-TYPE
  N0                 6               89
  N1                 5               32
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  FAM47B MUTATED    12   1   1
  FAM47B WILD-TYPE 125   8  21
D152V8, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  M0             12              125
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  FAM47B MUTATED    5  4   4  1
  FAM47B WILD-TYPE 83 29  35  8
D152V9, multiclass
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  I                5               83
  II               4               29
  III              4               35
  IV               1                8
D152V10, binary
                  cls
clus                 0   1
  FAM47B MUTATED     1  13
  FAM47B WILD-TYPE  15 143
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      1   13
  FAM47B WILD-TYPE   15  143
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  NO               1               15
  YES             13              143
D152V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM47B MUTATED                                             5
  FAM47B WILD-TYPE                                          57
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM47B MUTATED                                        2              6
  FAM47B WILD-TYPE                                     44             22
                  vv
clus               LIFELONG NON-SMOKER
  FAM47B MUTATED                     0
  FAM47B WILD-TYPE                  24
D152V12, multiclass
                                             clus
vv                                            FAM47B MUTATED FAM47B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           6               22
  LIFELONG NON-SMOKER                                      0               24
D152V13, continuous
                  vv
clus               R0 R1 R2 RX
  FAM47B MUTATED   12  0  1  0
  FAM47B WILD-TYPE 90  5  3 10
D152V14, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  R0             12               90
  R1              0                5
  R2              1                3
  RX              0               10

Clustering(153) Variable = OR5K3 MUTATION ANALYSIS
D153V1, survival
                 sevent
clus2              0  1
  OR5K3 MUTATED    6  1
  OR5K3 WILD-TYPE 93 49
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             142 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              1              49 
$`OR5K3 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-44-6145 TCGA-49-4514 TCGA-50-5049 
       24.03        19.10         6.44         3.35        43.20        48.82 
TCGA-91-6828 
        1.22 

$`OR5K3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR5K3 MUTATED OR5K3 WILD-TYPE 
           1.22            0.07 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          48.82           85.32 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          19.10           13.51 
[1] "1.2 - 48.8 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
[1] "hr=" "2.5"
D153V2, continuous
D153V3, binary
                 cls
clus               0  1
  OR5K3 MUTATED    3  4
  OR5K3 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      3    4
  OR5K3 WILD-TYPE   90   75
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D153V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5K3 MUTATED                            0                                 1
  OR5K3 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5K3 MUTATED                                                    5
  OR5K3 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5K3 MUTATED                                            0
  OR5K3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5K3 MUTATED                                               0
  OR5K3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5K3 MUTATED                                0
  OR5K3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5K3 MUTATED                                    0
  OR5K3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5K3 MUTATED                              0                             1
  OR5K3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5K3 MUTATED                                               0
  OR5K3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  OR5K3 MUTATED                                   0
  OR5K3 WILD-TYPE                                 2
D153V5, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5K3 MUTATED     4   3   0   0
  OR5K3 WILD-TYPE  37 105  14   8
D153V6, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR5K3 MUTATED    6  1     0
  OR5K3 WILD-TYPE 89 36    35
D153V7, multiclass
       clus
vv      OR5K3 MUTATED OR5K3 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR5K3 MUTATED     6   0   1
  OR5K3 WILD-TYPE 131   9  21
D153V8, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  OR5K3 MUTATED    6  1   0  0
  OR5K3 WILD-TYPE 82 32  39  9
D153V9, multiclass
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  I               6              82
  II              1              32
  III             0              39
  IV              0               9
D153V10, binary
                 cls
clus                0   1
  OR5K3 MUTATED     1   6
  OR5K3 WILD-TYPE  15 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      1    6
  OR5K3 WILD-TYPE   15  150
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  NO              1              15
  YES             6             150
D153V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5K3 MUTATED                                             2
  OR5K3 WILD-TYPE                                          60
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5K3 MUTATED                                        3              1
  OR5K3 WILD-TYPE                                     43             27
                 vv
clus              LIFELONG NON-SMOKER
  OR5K3 MUTATED                     0
  OR5K3 WILD-TYPE                  24
D153V12, multiclass
                                             clus
vv                                            OR5K3 MUTATED OR5K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D153V13, continuous
                 vv
clus               R0  R1  R2  RX
  OR5K3 MUTATED     2   0   0   1
  OR5K3 WILD-TYPE 100   5   4   9
D153V14, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  R0             2             100
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(154) Variable = HOXB3 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  HOXB3 MUTATED    7  2
  HOXB3 WILD-TYPE 92 48
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              9             140 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              2              48 
$`HOXB3 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-49-6742 TCGA-50-5933 TCGA-55-1594 
       19.92        29.95        25.02        15.02        77.88        38.73 
TCGA-64-5778 TCGA-64-5779 TCGA-73-4677 
       30.44        16.67         1.25 

$`HOXB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  HOXB3 MUTATED HOXB3 WILD-TYPE 
           1.25            0.07 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
          77.88           85.32 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
         25.020          12.825 
[1] "1.2 - 77.9 (25.0)" "0.1 - 85.3 (12.8)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
[1] "hr=" "2.6"
D154V2, continuous
D154V3, binary
                 cls
clus               0  1
  HOXB3 MUTATED    0 10
  HOXB3 WILD-TYPE 93 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      0   10
  HOXB3 WILD-TYPE   93   69
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  FEMALE             0              93
  MALE              10              69
D154V4, continuous
[1] "Remove cluster labels:" "HOXB3 MUTATED"         
clus
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HOXB3 MUTATED                            1                                 3
  HOXB3 WILD-TYPE                          1                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HOXB3 MUTATED                                                    4
  HOXB3 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HOXB3 MUTATED                                            0
  HOXB3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HOXB3 MUTATED                                               1
  HOXB3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  HOXB3 MUTATED                                0
  HOXB3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  HOXB3 MUTATED                                    0
  HOXB3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HOXB3 MUTATED                              0                             0
  HOXB3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HOXB3 MUTATED                                               0
  HOXB3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  HOXB3 MUTATED                                   1
  HOXB3 WILD-TYPE                                 1
D154V5, multiclass
                 vv
clus               T1  T2  T3  T4
  HOXB3 MUTATED     0   8   1   1
  HOXB3 WILD-TYPE  41 100  13   7
D154V6, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  T1             0              41
  T2             8             100
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  HOXB3 MUTATED    5  2     3
  HOXB3 WILD-TYPE 90 35    32
D154V7, multiclass
       clus
vv      HOXB3 MUTATED HOXB3 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  HOXB3 MUTATED     9   0   1
  HOXB3 WILD-TYPE 128   9  21
D154V8, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  HOXB3 MUTATED    5  2   3  0
  HOXB3 WILD-TYPE 83 31  36  9
D154V9, multiclass
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D154V10, binary
                 cls
clus                0   1
  HOXB3 MUTATED     1   9
  HOXB3 WILD-TYPE  15 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      1    9
  HOXB3 WILD-TYPE   15  147
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  NO              1              15
  YES             9             147
D154V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HOXB3 MUTATED                                             4
  HOXB3 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HOXB3 MUTATED                                        2              3
  HOXB3 WILD-TYPE                                     44             25
                 vv
clus              LIFELONG NON-SMOKER
  HOXB3 MUTATED                     0
  HOXB3 WILD-TYPE                  24
D154V12, multiclass
                                             clus
vv                                            HOXB3 MUTATED HOXB3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D154V13, continuous
                 vv
clus              R0 R1 R2 RX
  HOXB3 MUTATED    8  0  0  0
  HOXB3 WILD-TYPE 94  5  4 10
D154V14, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  R0             8              94
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(155) Variable = PTN MUTATION ANALYSIS
D155V1, survival
               sevent
clus2            0  1
  PTN MUTATED    4  0
  PTN WILD-TYPE 95 50
  PTN MUTATED PTN WILD-TYPE 
            4           145 
  PTN MUTATED PTN WILD-TYPE 
            0            50 
$`PTN MUTATED`
TCGA-35-4122 TCGA-44-3919 TCGA-91-6828 TCGA-91-6836 
        7.36         6.21         1.22         0.36 

$`PTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.25        41.33         1.28 
TCGA-91-6835 
        1.15 

  PTN MUTATED PTN WILD-TYPE 
         0.36          0.07 
  PTN MUTATED PTN WILD-TYPE 
         7.36         85.32 
  PTN MUTATED PTN WILD-TYPE 
        3.715        14.070 
[1] "0.4 - 7.4 (3.7)"   "0.1 - 85.3 (14.1)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
[1] "hr="     "1200000"
D155V2, continuous
D155V3, binary
               cls
clus             0  1
  PTN MUTATED    2  2
  PTN WILD-TYPE 91 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      2    2
  PTN WILD-TYPE   91   77
        clus
vv       PTN MUTATED PTN WILD-TYPE
  FEMALE           2            91
  MALE             2            77
D155V4, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            1            11 
   TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-5122 
"PTN WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PTN MUTATED                            0                                 0
  PTN WILD-TYPE                          2                                39
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTN MUTATED                                                    4
  PTN WILD-TYPE                                                110
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PTN MUTATED                                            0
  PTN WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PTN MUTATED                                               0
  PTN WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  PTN MUTATED                                0
  PTN WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  PTN MUTATED                                    0                            0
  PTN WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  PTN MUTATED                               0
  PTN WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PTN MUTATED                                               0
  PTN WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  PTN MUTATED                                   0
  PTN WILD-TYPE                                 2
D155V5, multiclass
               vv
clus             T1  T2  T3  T4
  PTN MUTATED     3   1   0   0
  PTN WILD-TYPE  38 107  14   8
D155V6, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  T1           3            38
  T2           1           107
  T3           0            14
  T4           0             8
               vv
clus            N0 N1 N2+N3
  PTN MUTATED    4  0     0
  PTN WILD-TYPE 91 37    35
D155V7, multiclass
       clus
vv      PTN MUTATED PTN WILD-TYPE
  N0              4            91
  N1              0            37
  N2+N3           0            35
               vv
clus             M0  M1  MX
  PTN MUTATED     2   0   2
  PTN WILD-TYPE 135   9  20
D155V8, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  M0           2           135
  M1           0             9
  MX           2            20
               vv
clus             I II III IV
  PTN MUTATED    4  0   0  0
  PTN WILD-TYPE 84 33  39  9
D155V9, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  I             4            84
  II            0            33
  III           0            39
  IV            0             9
D155V10, binary
               cls
clus              0   1
  PTN MUTATED     0   4
  PTN WILD-TYPE  16 152
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      0    4
  PTN WILD-TYPE   16  152
     clus
vv    PTN MUTATED PTN WILD-TYPE
  NO            0            16
  YES           4           152
D155V11, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2           112 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4425    TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4433    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5428    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4631    TCGA-38-4632    TCGA-44-2655    TCGA-44-2656 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5643 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4490    TCGA-49-4494 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510    TCGA-49-4514 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6742    TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5072    TCGA-50-5931    TCGA-50-5939    TCGA-50-5941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5942    TCGA-50-6590    TCGA-55-1596    TCGA-55-6543    TCGA-64-1676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-73-4658 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211    TCGA-80-5611 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6835 
"PTN WILD-TYPE" "PTN WILD-TYPE" 
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PTN MUTATED                                             1
  PTN WILD-TYPE                                          61
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PTN MUTATED                                        1              1
  PTN WILD-TYPE                                     45             27
               vv
clus            LIFELONG NON-SMOKER
  PTN MUTATED                     1
  PTN WILD-TYPE                  23
D155V12, multiclass
                                             clus
vv                                            PTN MUTATED PTN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           1            61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1            45
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   1            23
D155V13, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-35-4123 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-44-2655    TCGA-44-2656 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5645 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6642    TCGA-55-6712 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829 
"PTN WILD-TYPE" 
               vv
clus             R0  R1  R2  RX
  PTN MUTATED     2   0   0   0
  PTN WILD-TYPE 100   5   4  10
D155V14, multiclass
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2           119 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4402    TCGA-05-4403    TCGA-05-4405    TCGA-05-4410 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4424    TCGA-05-4425    TCGA-05-4426    TCGA-05-4427    TCGA-05-4430 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4432    TCGA-05-4433    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5428    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4628    TCGA-38-4629    TCGA-38-4630    TCGA-38-4631    TCGA-38-4632 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-6178    TCGA-44-2655    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-6144    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6775    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4494 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4514    TCGA-49-6744    TCGA-49-6767    TCGA-50-5055    TCGA-50-5066 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1592    TCGA-55-1594    TCGA-55-1596    TCGA-55-5899    TCGA-64-1676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3770 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3771    TCGA-67-3773    TCGA-67-4679    TCGA-67-6215    TCGA-67-6216 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659    TCGA-73-4662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 

Clustering(156) Variable = SAMD7 MUTATION ANALYSIS
D156V1, survival
                 sevent
clus2              0  1
  SAMD7 MUTATED    4  1
  SAMD7 WILD-TYPE 95 49
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              5             144 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              49 
$`SAMD7 MUTATED`
TCGA-05-4390 TCGA-05-5425 TCGA-35-5375 TCGA-49-4505 TCGA-49-6743 
       37.02         2.96         8.68        14.07        12.13 

$`SAMD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SAMD7 MUTATED SAMD7 WILD-TYPE 
           2.96            0.07 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          37.02           85.32 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          12.13           13.94 
[1] "3.0 - 37.0 (12.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
[1] "hr=" "1.1"
D156V2, continuous
D156V3, binary
                 cls
clus               0  1
  SAMD7 MUTATED    4  2
  SAMD7 WILD-TYPE 89 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      4    2
  SAMD7 WILD-TYPE   89   77
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D156V4, continuous
[1] "Remove cluster labels:" "SAMD7 MUTATED"         
clus
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SAMD7 MUTATED                            0                                 2
  SAMD7 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SAMD7 MUTATED                                                    3
  SAMD7 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SAMD7 MUTATED                                            0
  SAMD7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SAMD7 MUTATED                                               0
  SAMD7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SAMD7 MUTATED                                1
  SAMD7 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SAMD7 MUTATED                                    0
  SAMD7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SAMD7 MUTATED                              0                             0
  SAMD7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SAMD7 MUTATED                                               0
  SAMD7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  SAMD7 MUTATED                                   0
  SAMD7 WILD-TYPE                                 2
D156V5, multiclass
                 vv
clus               T1  T2  T3  T4
  SAMD7 MUTATED     1   5   0   0
  SAMD7 WILD-TYPE  40 103  14   8
D156V6, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  SAMD7 MUTATED    2  2     2
  SAMD7 WILD-TYPE 93 35    33
D156V7, multiclass
       clus
vv      SAMD7 MUTATED SAMD7 WILD-TYPE
  N0                2              93
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  SAMD7 MUTATED     5   0   1
  SAMD7 WILD-TYPE 132   9  21
D156V8, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  SAMD7 MUTATED    2  2   2  0
  SAMD7 WILD-TYPE 86 31  37  9
D156V9, multiclass
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  I               2              86
  II              2              31
  III             2              37
  IV              0               9
D156V10, binary
                 cls
clus                0   1
  SAMD7 MUTATED     0   6
  SAMD7 WILD-TYPE  16 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      0    6
  SAMD7 WILD-TYPE   16  150
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  NO              0              16
  YES             6             150
D156V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SAMD7 MUTATED                                             4
  SAMD7 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SAMD7 MUTATED                                        1              1
  SAMD7 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  SAMD7 MUTATED                     0
  SAMD7 WILD-TYPE                  24
D156V12, multiclass
                                             clus
vv                                            SAMD7 MUTATED SAMD7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D156V13, continuous
                 vv
clus              R0 R1 R2 RX
  SAMD7 MUTATED    5  0  0  0
  SAMD7 WILD-TYPE 97  5  4 10
D156V14, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(157) Variable = BIRC8 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2              0  1
  BIRC8 MUTATED    2  3
  BIRC8 WILD-TYPE 97 47
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              5             144 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              3              47 
$`BIRC8 MUTATED`
TCGA-05-4250 TCGA-44-6774 TCGA-49-4486 TCGA-73-4668 TCGA-91-6829 
        3.98         5.42        76.21        15.35        41.33 

$`BIRC8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
        0.30         3.35         9.93         7.76         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        16.41        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  BIRC8 MUTATED BIRC8 WILD-TYPE 
           3.98            0.07 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          76.21           85.32 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          15.35           13.51 
[1] "4.0 - 76.2 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
[1] "hr=" "1.1"
D157V2, continuous
D157V3, binary
                 cls
clus               0  1
  BIRC8 MUTATED    3  3
  BIRC8 WILD-TYPE 90 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      3    3
  BIRC8 WILD-TYPE   90   76
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D157V4, continuous
[1] "Remove cluster labels:" "BIRC8 MUTATED"         
clus
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BIRC8 MUTATED                            0                                 0
  BIRC8 WILD-TYPE                          2                                39
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BIRC8 MUTATED                                                    4
  BIRC8 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BIRC8 MUTATED                                            0
  BIRC8 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BIRC8 MUTATED                                               1
  BIRC8 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  BIRC8 MUTATED                                0
  BIRC8 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  BIRC8 MUTATED                                    1
  BIRC8 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BIRC8 MUTATED                              0                             0
  BIRC8 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BIRC8 MUTATED                                               0
  BIRC8 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  BIRC8 MUTATED                                   0
  BIRC8 WILD-TYPE                                 2
D157V5, multiclass
                 vv
clus               T1  T2  T3  T4
  BIRC8 MUTATED     2   3   1   0
  BIRC8 WILD-TYPE  39 105  13   8
D157V6, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  BIRC8 MUTATED    3  2     1
  BIRC8 WILD-TYPE 92 35    34
D157V7, multiclass
       clus
vv      BIRC8 MUTATED BIRC8 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  BIRC8 MUTATED     5   0   1
  BIRC8 WILD-TYPE 132   9  21
D157V8, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  BIRC8 MUTATED    3  1   2  0
  BIRC8 WILD-TYPE 85 32  37  9
D157V9, multiclass
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  I               3              85
  II              1              32
  III             2              37
  IV              0               9
D157V10, binary
                 cls
clus                0   1
  BIRC8 MUTATED     0   6
  BIRC8 WILD-TYPE  16 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      0    6
  BIRC8 WILD-TYPE   16  150
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  NO              0              16
  YES             6             150
D157V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BIRC8 MUTATED                                             3
  BIRC8 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BIRC8 MUTATED                                        2              1
  BIRC8 WILD-TYPE                                     44             27
                 vv
clus              LIFELONG NON-SMOKER
  BIRC8 MUTATED                     0
  BIRC8 WILD-TYPE                  24
D157V12, multiclass
                                             clus
vv                                            BIRC8 MUTATED BIRC8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D157V13, continuous
                 vv
clus              R0 R1 R2 RX
  BIRC8 MUTATED    3  0  1  0
  BIRC8 WILD-TYPE 99  5  3 10
D157V14, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  R0             3              99
  R1             0               5
  R2             1               3
  RX             0              10

Clustering(158) Variable = OR51A7 MUTATION ANALYSIS
D158V1, survival
                  sevent
clus2               0  1
  OR51A7 MUTATED    5  1
  OR51A7 WILD-TYPE 94 49
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               6              143 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               49 
$`OR51A7 MUTATED`
TCGA-05-4382 TCGA-44-3918 TCGA-50-5933 TCGA-50-6597 TCGA-67-6217 TCGA-73-4662 
       19.92         6.44        77.88        33.37        13.87        29.95 

$`OR51A7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR51A7 MUTATED OR51A7 WILD-TYPE 
            6.44             0.07 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
           77.88            85.32 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
          24.935           13.150 
[1] "6.4 - 77.9 (24.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
[1] "hr=" "3.9"
D158V2, continuous
D158V3, binary
                  cls
clus                0  1
  OR51A7 MUTATED    5  2
  OR51A7 WILD-TYPE 88 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      5    2
  OR51A7 WILD-TYPE   88   77
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  FEMALE              5               88
  MALE                2               77
D158V4, continuous
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR51A7 MUTATED                            0                                 1
  OR51A7 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR51A7 MUTATED                                                    6
  OR51A7 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR51A7 MUTATED                                            0
  OR51A7 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR51A7 MUTATED                                               0
  OR51A7 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR51A7 MUTATED                                0
  OR51A7 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR51A7 MUTATED                                    0
  OR51A7 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR51A7 MUTATED                              0                             0
  OR51A7 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR51A7 MUTATED                                               0
  OR51A7 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR51A7 MUTATED                                   0
  OR51A7 WILD-TYPE                                 2
D158V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR51A7 MUTATED     2   4   0   1
  OR51A7 WILD-TYPE  39 104  14   7
D158V6, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR51A7 MUTATED    5  1     1
  OR51A7 WILD-TYPE 90 36    34
D158V7, multiclass
       clus
vv      OR51A7 MUTATED OR51A7 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR51A7 MUTATED     7   0   0
  OR51A7 WILD-TYPE 130   9  22
D158V8, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR51A7 MUTATED    5  1   1  0
  OR51A7 WILD-TYPE 83 32  38  9
D158V9, multiclass
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  I                5               83
  II               1               32
  III              1               38
  IV               0                9
D158V10, binary
                  cls
clus                 0   1
  OR51A7 MUTATED     2   5
  OR51A7 WILD-TYPE  14 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      2    5
  OR51A7 WILD-TYPE   14  151
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  NO               2               14
  YES              5              151
D158V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR51A7 MUTATED                                             1
  OR51A7 WILD-TYPE                                          61
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR51A7 MUTATED                                        3              0
  OR51A7 WILD-TYPE                                     43             28
                  vv
clus               LIFELONG NON-SMOKER
  OR51A7 MUTATED                     2
  OR51A7 WILD-TYPE                  22
D158V12, multiclass
                                             clus
vv                                            OR51A7 MUTATED OR51A7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      2               22
D158V13, continuous
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4666 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
                  vv
clus               R0 R1 R2 RX
  OR51A7 MUTATED    5  0  0  0
  OR51A7 WILD-TYPE 97  5  4 10
D158V14, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  R0              5               97
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(159) Variable = TYR MUTATION ANALYSIS
D159V1, survival
               sevent
clus2            0  1
  TYR MUTATED    5  3
  TYR WILD-TYPE 94 47
  TYR MUTATED TYR WILD-TYPE 
            8           141 
  TYR MUTATED TYR WILD-TYPE 
            3            47 
$`TYR MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-44-2657 TCGA-44-3918 TCGA-44-6144 TCGA-49-4514 
        9.96         8.02        13.15         6.44         0.30        43.20 
TCGA-50-6590 TCGA-64-5779 
       42.31        16.67 

$`TYR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TYR MUTATED TYR WILD-TYPE 
         0.30          0.07 
  TYR MUTATED TYR WILD-TYPE 
        43.20         85.32 
  TYR MUTATED TYR WILD-TYPE 
       11.555        14.010 
[1] "0.3 - 43.2 (11.6)" "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
[1] "hr=" "1.4"
D159V2, continuous
D159V3, binary
               cls
clus             0  1
  TYR MUTATED    6  4
  TYR WILD-TYPE 87 75
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      6    4
  TYR WILD-TYPE   87   75
        clus
vv       TYR MUTATED TYR WILD-TYPE
  FEMALE           6            87
  MALE             4            75
D159V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TYR MUTATED                            1                                 3
  TYR WILD-TYPE                          1                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TYR MUTATED                                                    5
  TYR WILD-TYPE                                                109
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TYR MUTATED                                            0
  TYR WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TYR MUTATED                                               0
  TYR WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  TYR MUTATED                                0
  TYR WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  TYR MUTATED                                    0                            0
  TYR WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  TYR MUTATED                               1
  TYR WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TYR MUTATED                                               0
  TYR WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  TYR MUTATED                                   0
  TYR WILD-TYPE                                 2
D159V5, multiclass
               vv
clus             T1  T2  T3  T4
  TYR MUTATED     3   5   1   1
  TYR WILD-TYPE  38 103  13   7
D159V6, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  T1           3            38
  T2           5           103
  T3           1            13
  T4           1             7
               vv
clus            N0 N1 N2+N3
  TYR MUTATED    6  1     1
  TYR WILD-TYPE 89 36    34
D159V7, multiclass
       clus
vv      TYR MUTATED TYR WILD-TYPE
  N0              6            89
  N1              1            36
  N2+N3           1            34
               vv
clus             M0  M1  MX
  TYR MUTATED     8   1   1
  TYR WILD-TYPE 129   8  21
D159V8, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  M0           8           129
  M1           1             8
  MX           1            21
               vv
clus             I II III IV
  TYR MUTATED    6  1   2  1
  TYR WILD-TYPE 82 32  37  8
D159V9, multiclass
     clus
vv    TYR MUTATED TYR WILD-TYPE
  I             6            82
  II            1            32
  III           2            37
  IV            1             8
D159V10, binary
               cls
clus              0   1
  TYR MUTATED     0  10
  TYR WILD-TYPE  16 146
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      0   10
  TYR WILD-TYPE   16  146
     clus
vv    TYR MUTATED TYR WILD-TYPE
  NO            0            16
  YES          10           146
D159V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TYR MUTATED                                             4
  TYR WILD-TYPE                                          58
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TYR MUTATED                                        3              2
  TYR WILD-TYPE                                     43             26
               vv
clus            LIFELONG NON-SMOKER
  TYR MUTATED                     1
  TYR WILD-TYPE                  23
D159V12, multiclass
                                             clus
vv                                            TYR MUTATED TYR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                3            43
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   1            23
D159V13, continuous
               vv
clus            R0 R1 R2 RX
  TYR MUTATED    5  0  1  3
  TYR WILD-TYPE 97  5  3  7
D159V14, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  R0           5            97
  R1           0             5
  R2           1             3
  RX           3             7

Clustering(160) Variable = TGFB2 MUTATION ANALYSIS
D160V1, survival
                 sevent
clus2              0  1
  TGFB2 MUTATED    4  2
  TGFB2 WILD-TYPE 95 48
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             143 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              2              48 
$`TGFB2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-3918 TCGA-44-6145 TCGA-49-4487 TCGA-64-5778 
       19.92         9.96         6.44         3.35        28.11        30.44 

$`TGFB2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84         0.10        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TGFB2 MUTATED TGFB2 WILD-TYPE 
           3.35            0.07 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
          30.44           85.32 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
          14.94           13.87 
[1] "3.4 - 30.4 (14.9)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
[1] "hr=" "1.5"
D160V2, continuous
D160V3, binary
                 cls
clus               0  1
  TGFB2 MUTATED    3  3
  TGFB2 WILD-TYPE 90 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      3    3
  TGFB2 WILD-TYPE   90   76
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D160V4, continuous
[1] "Remove cluster labels:" "TGFB2 MUTATED"         
clus
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TGFB2 MUTATED                            0                                 2
  TGFB2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TGFB2 MUTATED                                                    3
  TGFB2 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TGFB2 MUTATED                                            0
  TGFB2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TGFB2 MUTATED                                               1
  TGFB2 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TGFB2 MUTATED                                0
  TGFB2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TGFB2 MUTATED                                    0
  TGFB2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TGFB2 MUTATED                              0                             0
  TGFB2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TGFB2 MUTATED                                               0
  TGFB2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  TGFB2 MUTATED                                   0
  TGFB2 WILD-TYPE                                 2
D160V5, multiclass
                 vv
clus               T1  T2  T3  T4
  TGFB2 MUTATED     3   2   0   1
  TGFB2 WILD-TYPE  38 106  14   7
D160V6, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  T1             3              38
  T2             2             106
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  TGFB2 MUTATED    5  1     0
  TGFB2 WILD-TYPE 90 36    35
D160V7, multiclass
       clus
vv      TGFB2 MUTATED TGFB2 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  TGFB2 MUTATED     6   0   0
  TGFB2 WILD-TYPE 131   9  22
D160V8, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  TGFB2 MUTATED    5  0   1  0
  TGFB2 WILD-TYPE 83 33  38  9
D160V9, multiclass
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  I               5              83
  II              0              33
  III             1              38
  IV              0               9
D160V10, binary
                 cls
clus                0   1
  TGFB2 MUTATED     0   6
  TGFB2 WILD-TYPE  16 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      0    6
  TGFB2 WILD-TYPE   16  150
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  NO              0              16
  YES             6             150
D160V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TGFB2 MUTATED                                             4
  TGFB2 WILD-TYPE                                          58
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TGFB2 MUTATED                                        2              0
  TGFB2 WILD-TYPE                                     44             28
                 vv
clus              LIFELONG NON-SMOKER
  TGFB2 MUTATED                     0
  TGFB2 WILD-TYPE                  24
D160V12, multiclass
                                             clus
vv                                            TGFB2 MUTATED TGFB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D160V13, continuous
                 vv
clus              R0 R1 R2 RX
  TGFB2 MUTATED    5  0  0  0
  TGFB2 WILD-TYPE 97  5  4 10
D160V14, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             0              10

Clustering(161) Variable = GPR158 MUTATION ANALYSIS
D161V1, survival
                  sevent
clus2               0  1
  GPR158 MUTATED    8  8
  GPR158 WILD-TYPE 91 42
  GPR158 MUTATED GPR158 WILD-TYPE 
              16              133 
  GPR158 MUTATED GPR158 WILD-TYPE 
               8               42 
$`GPR158 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4427 TCGA-05-4432 TCGA-05-5420 TCGA-38-4625 
       19.92        47.05        26.01        25.02         1.02        47.61 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-44-3918 TCGA-44-6777 
       49.02        28.37        11.64        44.61         6.44        32.45 
TCGA-50-5930 TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
        9.27        42.31        12.16         1.97 

$`GPR158 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       30.02        26.01        25.02        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
        8.68        85.32        37.71        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GPR158 MUTATED GPR158 WILD-TYPE 
            1.02             0.07 
  GPR158 MUTATED GPR158 WILD-TYPE 
           49.02            85.32 
  GPR158 MUTATED GPR158 WILD-TYPE 
          25.515           13.150 
[1] "1.0 - 49.0 (25.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
[1] "hr=" "1.2"
D161V2, continuous
D161V3, binary
                  cls
clus                0  1
  GPR158 MUTATED   11  7
  GPR158 WILD-TYPE 82 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED     11    7
  GPR158 WILD-TYPE   82   72
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  FEMALE             11               82
  MALE                7               72
D161V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR158 MUTATED                            0                                 6
  GPR158 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR158 MUTATED                                                   12
  GPR158 WILD-TYPE                                                102
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR158 MUTATED                                            0
  GPR158 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR158 MUTATED                                0
  GPR158 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                                    0
  GPR158 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                              0                             0
  GPR158 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  GPR158 MUTATED                                   0
  GPR158 WILD-TYPE                                 2
D161V5, multiclass
                  vv
clus               T1 T2 T3 T4
  GPR158 MUTATED    2 12  3  1
  GPR158 WILD-TYPE 39 96 11  7
D161V6, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  T1              2               39
  T2             12               96
  T3              3               11
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  GPR158 MUTATED    9  4     4
  GPR158 WILD-TYPE 86 33    31
D161V7, multiclass
       clus
vv      GPR158 MUTATED GPR158 WILD-TYPE
  N0                 9               86
  N1                 4               33
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  GPR158 MUTATED    15   1   2
  GPR158 WILD-TYPE 122   8  20
D161V8, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  M0             15              122
  M1              1                8
  MX              2               20
                  vv
clus                I II III IV
  GPR158 MUTATED    8  5   4  1
  GPR158 WILD-TYPE 80 28  35  8
D161V9, multiclass
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  I                8               80
  II               5               28
  III              4               35
  IV               1                8
D161V10, binary
                  cls
clus                 0   1
  GPR158 MUTATED     2  16
  GPR158 WILD-TYPE  14 140
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      2   16
  GPR158 WILD-TYPE   14  140
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               2               14
  YES             16              140
D161V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GPR158 MUTATED                                            11
  GPR158 WILD-TYPE                                          51
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GPR158 MUTATED                                        1              4
  GPR158 WILD-TYPE                                     45             24
                  vv
clus               LIFELONG NON-SMOKER
  GPR158 MUTATED                     1
  GPR158 WILD-TYPE                  23
D161V12, multiclass
                                             clus
vv                                            GPR158 MUTATED GPR158 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1               23
D161V13, continuous
                  vv
clus               R0 R1 R2 RX
  GPR158 MUTATED   13  0  0  1
  GPR158 WILD-TYPE 89  5  4  9
D161V14, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  R0             13               89
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(162) Variable = MTTP MUTATION ANALYSIS
D162V1, survival
                sevent
clus2             0  1
  MTTP MUTATED    3  2
  MTTP WILD-TYPE 96 48
  MTTP MUTATED MTTP WILD-TYPE 
             5            144 
  MTTP MUTATED MTTP WILD-TYPE 
             2             48 
$`MTTP MUTATED`
TCGA-05-4396 TCGA-49-4487 TCGA-50-5049 TCGA-64-1680 TCGA-67-3774 
        9.96        28.11        48.82        37.02         0.59 

$`MTTP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MTTP MUTATED MTTP WILD-TYPE 
          0.59           0.07 
  MTTP MUTATED MTTP WILD-TYPE 
         48.82          85.32 
  MTTP MUTATED MTTP WILD-TYPE 
         28.11          13.51 
[1] "0.6 - 48.8 (28.1)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
[1] "hr=" "1.1"
D162V2, continuous
D162V3, binary
                cls
clus              0  1
  MTTP MUTATED    2  4
  MTTP WILD-TYPE 91 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    4
  MTTP WILD-TYPE   91   75
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  FEMALE            2             91
  MALE              4             75
D162V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MTTP MUTATED                            0                                 3
  MTTP WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MTTP MUTATED                                                    3
  MTTP WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MTTP MUTATED                                            0
  MTTP WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MTTP MUTATED                                0
  MTTP WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MTTP MUTATED                                    0
  MTTP WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MTTP MUTATED                              0                             0
  MTTP WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  MTTP MUTATED                                   0
  MTTP WILD-TYPE                                 2
D162V5, multiclass
                vv
clus              T1  T2  T3  T4
  MTTP MUTATED     1   4   0   1
  MTTP WILD-TYPE  40 104  14   7
D162V6, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  T1            1             40
  T2            4            104
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  MTTP MUTATED    4  1     1
  MTTP WILD-TYPE 91 36    34
D162V7, multiclass
       clus
vv      MTTP MUTATED MTTP WILD-TYPE
  N0               4             91
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  MTTP MUTATED     5   1   0
  MTTP WILD-TYPE 132   8  22
D162V8, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  M0            5            132
  M1            1              8
  MX            0             22
                vv
clus              I II III IV
  MTTP MUTATED    4  0   1  1
  MTTP WILD-TYPE 84 33  38  8
D162V9, multiclass
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  I              4             84
  II             0             33
  III            1             38
  IV             1              8
D162V10, binary
                cls
clus               0   1
  MTTP MUTATED     2   4
  MTTP WILD-TYPE  14 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    4
  MTTP WILD-TYPE   14  152
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  NO             2             14
  YES            4            152
D162V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MTTP MUTATED                                             2
  MTTP WILD-TYPE                                          60
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MTTP MUTATED                                        3              0
  MTTP WILD-TYPE                                     43             28
                vv
clus             LIFELONG NON-SMOKER
  MTTP MUTATED                     0
  MTTP WILD-TYPE                  24
D162V12, multiclass
                                             clus
vv                                            MTTP MUTATED MTTP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D162V13, continuous
                vv
clus             R0 R1 R2 RX
  MTTP MUTATED    3  0  0  1
  MTTP WILD-TYPE 99  5  4  9
D162V14, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  R0            3             99
  R1            0              5
  R2            0              4
  RX            1              9

Clustering(163) Variable = COL25A1 MUTATION ANALYSIS
D163V1, survival
                   sevent
clus2                0  1
  COL25A1 MUTATED    5  3
  COL25A1 WILD-TYPE 94 47
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                8               141 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                3                47 
$`COL25A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5715 TCGA-38-4631 TCGA-44-2656 TCGA-44-2665 
       19.92         9.96         2.04        11.64        19.10        13.15 
TCGA-44-3398 TCGA-49-4510 
        8.32        29.46 

$`COL25A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  COL25A1 MUTATED COL25A1 WILD-TYPE 
             2.04              0.07 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
            29.46             85.32 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
           12.395            14.010 
[1] "2.0 - 29.5 (12.4)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
[1] "hr=" "2.1"
D163V2, continuous
D163V3, binary
                   cls
clus                 0  1
  COL25A1 MUTATED    6  5
  COL25A1 WILD-TYPE 87 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      6    5
  COL25A1 WILD-TYPE   87   74
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  FEMALE               6                87
  MALE                 5                74
D163V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL25A1 MUTATED                            0
  COL25A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL25A1 MUTATED                                   4
  COL25A1 WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL25A1 MUTATED                                                    5
  COL25A1 WILD-TYPE                                                109
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL25A1 MUTATED                                            0
  COL25A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL25A1 MUTATED                                               0
  COL25A1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL25A1 MUTATED                                0
  COL25A1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL25A1 MUTATED                                    0
  COL25A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL25A1 MUTATED                              0                             1
  COL25A1 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL25A1 MUTATED                                               1
  COL25A1 WILD-TYPE                                             0
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  COL25A1 MUTATED                                   0
  COL25A1 WILD-TYPE                                 2
D163V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  COL25A1 MUTATED     1   8   1   1
  COL25A1 WILD-TYPE  40 100  13   7
D163V6, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  T1               1                40
  T2               8               100
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  COL25A1 MUTATED    7  3     1
  COL25A1 WILD-TYPE 88 34    34
D163V7, multiclass
       clus
vv      COL25A1 MUTATED COL25A1 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  COL25A1 MUTATED    11   0   0
  COL25A1 WILD-TYPE 126   9  22
D163V8, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               0                22
                   vv
clus                 I II III IV
  COL25A1 MUTATED    7  2   2  0
  COL25A1 WILD-TYPE 81 31  37  9
D163V9, multiclass
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  I                 7                81
  II                2                31
  III               2                37
  IV                0                 9
D163V10, binary
                   cls
clus                  0   1
  COL25A1 MUTATED     0  11
  COL25A1 WILD-TYPE  16 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      0   11
  COL25A1 WILD-TYPE   16  145
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  NO                0                16
  YES              11               145
D163V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  COL25A1 MUTATED                                             7
  COL25A1 WILD-TYPE                                          55
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  COL25A1 MUTATED                                        1              1
  COL25A1 WILD-TYPE                                     45             27
                   vv
clus                LIFELONG NON-SMOKER
  COL25A1 MUTATED                     2
  COL25A1 WILD-TYPE                  22
D163V12, multiclass
                                             clus
vv                                            COL25A1 MUTATED COL25A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                22
D163V13, continuous
                   vv
clus                R0 R1 R2 RX
  COL25A1 MUTATED    8  0  1  1
  COL25A1 WILD-TYPE 94  5  3  9
D163V14, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  R0               8                94
  R1               0                 5
  R2               1                 3
  RX               1                 9

Clustering(164) Variable = RB1 MUTATION ANALYSIS
D164V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    4  3
  RB1 WILD-TYPE 95 47
  RB1 MUTATED RB1 WILD-TYPE 
            7           142 
  RB1 MUTATED RB1 WILD-TYPE 
            3            47 
$`RB1 MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-35-5375 TCGA-44-6775 TCGA-91-6828 TCGA-91-6829 
       24.03         2.96         8.68         2.70         1.22        41.33 
TCGA-91-6835 
        1.15 

$`RB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6831 TCGA-91-6836 
        4.01         1.25         1.28         0.36 

  RB1 MUTATED RB1 WILD-TYPE 
         1.15          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        41.33         85.32 
  RB1 MUTATED RB1 WILD-TYPE 
         2.96         14.04 
[1] "1.1 - 41.3 (3.0)"  "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "2.6"
D164V2, continuous
D164V3, binary
               cls
clus             0  1
  RB1 MUTATED    2  5
  RB1 WILD-TYPE 91 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      2    5
  RB1 WILD-TYPE   91   74
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           2            91
  MALE             5            74
D164V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-75-5122 
"RB1 WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RB1 MUTATED                            0                                 2
  RB1 WILD-TYPE                          2                                37
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                    4
  RB1 WILD-TYPE                                                110
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RB1 MUTATED                                            0
  RB1 WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RB1 MUTATED                                               1
  RB1 WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  RB1 MUTATED                                0
  RB1 WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  RB1 MUTATED                                    0                            0
  RB1 WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  RB1 MUTATED                               0
  RB1 WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RB1 MUTATED                                               0
  RB1 WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  RB1 MUTATED                                   0
  RB1 WILD-TYPE                                 2
D164V5, multiclass
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     2   4   0   1
  RB1 WILD-TYPE  39 104  14   7
D164V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            39
  T2           4           104
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  RB1 MUTATED    4  1     2
  RB1 WILD-TYPE 91 36    33
D164V7, multiclass
       clus
vv      RB1 MUTATED RB1 WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           2            33
               vv
clus             M0  M1  MX
  RB1 MUTATED     3   0   4
  RB1 WILD-TYPE 134   9  18
D164V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0           3           134
  M1           0             9
  MX           4            18
               vv
clus             I II III IV
  RB1 MUTATED    4  1   2  0
  RB1 WILD-TYPE 84 32  37  9
D164V9, multiclass
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  I             4            84
  II            1            32
  III           2            37
  IV            0             9
D164V10, binary
               cls
clus              0   1
  RB1 MUTATED     0   7
  RB1 WILD-TYPE  16 149
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   16  149
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            16
  YES           7           149
D164V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RB1 MUTATED                                             4
  RB1 WILD-TYPE                                          58
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RB1 MUTATED                                        2              1
  RB1 WILD-TYPE                                     44             27
               vv
clus            LIFELONG NON-SMOKER
  RB1 MUTATED                     0
  RB1 WILD-TYPE                  24
D164V12, multiclass
                                             clus
vv                                            RB1 MUTATED RB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            44
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   0            24
D164V13, continuous
               vv
clus            R0 R1 R2 RX
  RB1 MUTATED    3  0  0  1
  RB1 WILD-TYPE 99  5  4  9
D164V14, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  R0           3            99
  R1           0             5
  R2           0             4
  RX           1             9

Clustering(165) Variable = CYLC1 MUTATION ANALYSIS
D165V1, survival
                 sevent
clus2              0  1
  CYLC1 MUTATED    5  1
  CYLC1 WILD-TYPE 94 49
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             143 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              49 
$`CYLC1 MUTATED`
TCGA-38-4626 TCGA-49-6744 TCGA-50-5933 TCGA-64-1678 TCGA-64-5778 TCGA-64-5781 
       85.32        12.99        77.88        39.09        30.44        39.52 

$`CYLC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       20.65        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CYLC1 MUTATED CYLC1 WILD-TYPE 
          12.99            0.07 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
          85.32           83.84 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
         39.305          13.150 
[1] "13.0 - 85.3 (39.3)" "0.1 - 83.8 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
[1] "hr=" "8.2"
D165V2, continuous
D165V3, binary
                 cls
clus               0  1
  CYLC1 MUTATED    4  2
  CYLC1 WILD-TYPE 89 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC1 MUTATED      4    2
  CYLC1 WILD-TYPE   89   77
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D165V4, continuous
[1] "Remove cluster labels:" "CYLC1 MUTATED"         
clus
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CYLC1 MUTATED                            0                                 2
  CYLC1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYLC1 MUTATED                                                    3
  CYLC1 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CYLC1 MUTATED                                            0
  CYLC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CYLC1 MUTATED                                               1
  CYLC1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CYLC1 MUTATED                                0
  CYLC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CYLC1 MUTATED                                    0
  CYLC1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CYLC1 MUTATED                              0                             0
  CYLC1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CYLC1 MUTATED                                               0
  CYLC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  CYLC1 MUTATED                                   0
  CYLC1 WILD-TYPE                                 2
D165V5, multiclass
                 vv
clus               T1  T2  T3  T4
  CYLC1 MUTATED     0   5   0   1
  CYLC1 WILD-TYPE  41 103  14   7
D165V6, multiclass
    clus
vv   CYLC1 MUTATED CYLC1 WILD-TYPE
  T1             0              41
  T2             5             103
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  CYLC1 MUTATED    4  1     1
  CYLC1 WILD-TYPE 91 36    34
D165V7, multiclass
       clus
vv      CYLC1 MUTATED CYLC1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  CYLC1 MUTATED     5   0   1
  CYLC1 WILD-TYPE 132   9  21
D165V8, multiclass
    clus
vv   CYLC1 MUTATED CYLC1 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
                 vv
clus               I II III IV
  CYLC1 MUTATED    2  3   1  0
  CYLC1 WILD-TYPE 86 30  38  9
D165V9, multiclass
     clus
vv    CYLC1 MUTATED CYLC1 WILD-TYPE
  I               2              86
  II              3              30
  III             1              38
  IV              0               9
D165V10, binary
                 cls
clus                0   1
  CYLC1 MUTATED     1   5
  CYLC1 WILD-TYPE  15 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC1 MUTATED      1    5
  CYLC1 WILD-TYPE   15  151
     clus
vv    CYLC1 MUTATED CYLC1 WILD-TYPE
  NO              1              15
  YES             5             151
D165V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CYLC1 MUTATED                                             3
  CYLC1 WILD-TYPE                                          59
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CYLC1 MUTATED                                        1              1
  CYLC1 WILD-TYPE                                     45             27
                 vv
clus              LIFELONG NON-SMOKER
  CYLC1 MUTATED                     0
  CYLC1 WILD-TYPE                  24
D165V12, multiclass
                                             clus
vv                                            CYLC1 MUTATED CYLC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D165V13, continuous
                 vv
clus              R0 R1 R2 RX
  CYLC1 MUTATED    4  0  0  1
  CYLC1 WILD-TYPE 98  5  4  9
D165V14, multiclass
    clus
vv   CYLC1 MUTATED CYLC1 WILD-TYPE
  R0             4              98
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(166) Variable = CYP4V2 MUTATION ANALYSIS
D166V1, survival
                  sevent
clus2               0  1
  CYP4V2 MUTATED    2  4
  CYP4V2 WILD-TYPE 97 46
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              143 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               4               46 
$`CYP4V2 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-38-4632 TCGA-49-4501 TCGA-55-6712 TCGA-91-6829 
       14.01         9.96        44.61        46.72         0.79        41.33 

$`CYP4V2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
            0.79             0.07 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           46.72            85.32 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           27.67            13.15 
[1] "0.8 - 46.7 (27.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
[1] "hr=" "1.5"
D166V2, continuous
D166V3, binary
                  cls
clus                0  1
  CYP4V2 MUTATED    1  5
  CYP4V2 WILD-TYPE 92 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      1    5
  CYP4V2 WILD-TYPE   92   74
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D166V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CYP4V2 MUTATED                            0                                 2
  CYP4V2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP4V2 MUTATED                                                    3
  CYP4V2 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CYP4V2 MUTATED                                            0
  CYP4V2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CYP4V2 MUTATED                                               1
  CYP4V2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CYP4V2 MUTATED                                0
  CYP4V2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CYP4V2 MUTATED                                    0
  CYP4V2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CYP4V2 MUTATED                              0                             0
  CYP4V2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CYP4V2 MUTATED                                               0
  CYP4V2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CYP4V2 MUTATED                                   0
  CYP4V2 WILD-TYPE                                 2
D166V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CYP4V2 MUTATED     0   5   0   1
  CYP4V2 WILD-TYPE  41 103  14   7
D166V6, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CYP4V2 MUTATED    2  3     1
  CYP4V2 WILD-TYPE 93 34    34
D166V7, multiclass
       clus
vv      CYP4V2 MUTATED CYP4V2 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  CYP4V2 MUTATED     3   1   2
  CYP4V2 WILD-TYPE 134   8  20
D166V8, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  M0              3              134
  M1              1                8
  MX              2               20
                  vv
clus                I II III IV
  CYP4V2 MUTATED    2  0   2  1
  CYP4V2 WILD-TYPE 86 33  37  8
D166V9, multiclass
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  I                2               86
  II               0               33
  III              2               37
  IV               1                8
D166V10, binary
                  cls
clus                 0   1
  CYP4V2 MUTATED     0   6
  CYP4V2 WILD-TYPE  16 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      0    6
  CYP4V2 WILD-TYPE   16  150
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  NO               0               16
  YES              6              150
D166V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CYP4V2 MUTATED                                             3
  CYP4V2 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CYP4V2 MUTATED                                        2              0
  CYP4V2 WILD-TYPE                                     44             28
                  vv
clus               LIFELONG NON-SMOKER
  CYP4V2 MUTATED                     1
  CYP4V2 WILD-TYPE                  23
D166V12, multiclass
                                             clus
vv                                            CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D166V13, continuous
                  vv
clus               R0 R1 R2 RX
  CYP4V2 MUTATED    3  0  0  1
  CYP4V2 WILD-TYPE 99  5  4  9
D166V14, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  R0              3               99
  R1              0                5
  R2              0                4
  RX              1                9

Clustering(167) Variable = FGF14 MUTATION ANALYSIS
D167V1, survival
                 sevent
clus2              0  1
  FGF14 MUTATED    2  4
  FGF14 WILD-TYPE 97 46
  FGF14 MUTATED FGF14 WILD-TYPE 
              6             143 
  FGF14 MUTATED FGF14 WILD-TYPE 
              4              46 
$`FGF14 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-3918 TCGA-49-4494 TCGA-50-5930 TCGA-64-5775 
       19.92         9.96         6.44        35.54         9.27         0.10 

$`FGF14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FGF14 MUTATED FGF14 WILD-TYPE 
           0.10            0.07 
  FGF14 MUTATED FGF14 WILD-TYPE 
          35.54           85.32 
  FGF14 MUTATED FGF14 WILD-TYPE 
          9.615          14.010 
[1] "0.1 - 35.5 (9.6)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
[1] "hr=" "3.7"
D167V2, continuous
D167V3, binary
                 cls
clus               0  1
  FGF14 MUTATED    1  6
  FGF14 WILD-TYPE 92 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   92   73
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  FEMALE             1              92
  MALE               6              73
D167V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FGF14 MUTATED                            0                                 4
  FGF14 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FGF14 MUTATED                                                    3
  FGF14 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FGF14 MUTATED                                            0
  FGF14 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FGF14 MUTATED                                               0
  FGF14 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FGF14 MUTATED                                0
  FGF14 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FGF14 MUTATED                                    0
  FGF14 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FGF14 MUTATED                              0                             0
  FGF14 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FGF14 MUTATED                                               0
  FGF14 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  FGF14 MUTATED                                   0
  FGF14 WILD-TYPE                                 2
D167V5, multiclass
                 vv
clus               T1  T2  T3  T4
  FGF14 MUTATED     1   3   1   2
  FGF14 WILD-TYPE  40 105  13   6
D167V6, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  T1             1              40
  T2             3             105
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  FGF14 MUTATED    4  1     2
  FGF14 WILD-TYPE 91 36    33
D167V7, multiclass
       clus
vv      FGF14 MUTATED FGF14 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  FGF14 MUTATED     7   0   0
  FGF14 WILD-TYPE 130   9  22
D167V8, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  FGF14 MUTATED    3  0   4  0
  FGF14 WILD-TYPE 85 33  35  9
D167V9, multiclass
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  I               3              85
  II              0              33
  III             4              35
  IV              0               9
D167V10, binary
                 cls
clus                0   1
  FGF14 MUTATED     1   6
  FGF14 WILD-TYPE  15 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   15  150
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  NO              1              15
  YES             6             150
D167V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FGF14 MUTATED                                             2
  FGF14 WILD-TYPE                                          60
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FGF14 MUTATED                                        3              1
  FGF14 WILD-TYPE                                     43             27
                 vv
clus              LIFELONG NON-SMOKER
  FGF14 MUTATED                     0
  FGF14 WILD-TYPE                  24
D167V12, multiclass
                                             clus
vv                                            FGF14 MUTATED FGF14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D167V13, continuous
                 vv
clus              R0 R1 R2 RX
  FGF14 MUTATED    5  0  0  1
  FGF14 WILD-TYPE 97  5  4  9
D167V14, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  R0             5              97
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(168) Variable = GC MUTATION ANALYSIS
D168V1, survival
              sevent
clus2           0  1
  GC MUTATED    3  2
  GC WILD-TYPE 96 48
  GC MUTATED GC WILD-TYPE 
           5          144 
  GC MUTATED GC WILD-TYPE 
           2           48 
$`GC MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-44-2668 TCGA-64-5779 
       38.07         9.96        24.03         8.09        16.67 

$`GC WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       39.09        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  GC MUTATED GC WILD-TYPE 
        8.09         0.07 
  GC MUTATED GC WILD-TYPE 
       38.07        85.32 
  GC MUTATED GC WILD-TYPE 
       16.67        13.51 
[1] "8.1 - 38.1 (16.7)" "0.1 - 85.3 (13.5)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
[1] "hr=" "1.4"
D168V2, continuous
D168V3, binary
              cls
clus            0  1
  GC MUTATED    0  5
  GC WILD-TYPE 93 74
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      0    5
  GC WILD-TYPE   93   74
        clus
vv       GC MUTATED GC WILD-TYPE
  FEMALE          0           93
  MALE            5           74
D168V4, continuous
              vv
clus           LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GC MUTATED                            1                                 2
  GC WILD-TYPE                          1                                37
              vv
clus           LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GC MUTATED                                                    2
  GC WILD-TYPE                                                112
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GC MUTATED                                            0
  GC WILD-TYPE                                          1
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GC MUTATED                                               0
  GC WILD-TYPE                                             2
              vv
clus           LUNG CLEAR CELL ADENOCARCINOMA
  GC MUTATED                                0
  GC WILD-TYPE                              2
              vv
clus           LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  GC MUTATED                                    0                            0
  GC WILD-TYPE                                  2                            2
              vv
clus           LUNG PAPILLARY ADENOCARCINOMA
  GC MUTATED                               0
  GC WILD-TYPE                             5
              vv
clus           LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GC MUTATED                                               0
  GC WILD-TYPE                                             1
              vv
clus           MUCINOUS (COLLOID) ADENOCARCINOMA
  GC MUTATED                                   0
  GC WILD-TYPE                                 2
D168V5, multiclass
              vv
clus            T1  T2  T3  T4
  GC MUTATED     0   4   0   1
  GC WILD-TYPE  41 104  14   7
D168V6, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  T1          0           41
  T2          4          104
  T3          0           14
  T4          1            7
              vv
clus           N0 N1 N2+N3
  GC MUTATED    2  2     1
  GC WILD-TYPE 93 35    34
D168V7, multiclass
       clus
vv      GC MUTATED GC WILD-TYPE
  N0             2           93
  N1             2           35
  N2+N3          1           34
              vv
clus            M0  M1  MX
  GC MUTATED     5   0   0
  GC WILD-TYPE 132   9  22
D168V8, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  M0          5          132
  M1          0            9
  MX          0           22
              vv
clus            I II III IV
  GC MUTATED    2  1   2  0
  GC WILD-TYPE 86 32  37  9
D168V9, multiclass
     clus
vv    GC MUTATED GC WILD-TYPE
  I            2           86
  II           1           32
  III          2           37
  IV           0            9
D168V10, binary
              cls
clus             0   1
  GC MUTATED     0   5
  GC WILD-TYPE  16 151
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      0    5
  GC WILD-TYPE   16  151
     clus
vv    GC MUTATED GC WILD-TYPE
  NO           0           16
  YES          5          151
D168V11, continuous
              vv
clus           CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GC MUTATED                                             2
  GC WILD-TYPE                                          60
              vv
clus           CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GC MUTATED                                        2              1
  GC WILD-TYPE                                     44             27
              vv
clus           LIFELONG NON-SMOKER
  GC MUTATED                     0
  GC WILD-TYPE                  24
D168V12, multiclass
                                             clus
vv                                            GC MUTATED GC WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          2           60
  CURRENT REFORMED SMOKER FOR > 15 YEARS               2           44
  CURRENT SMOKER                                       1           27
  LIFELONG NON-SMOKER                                  0           24
D168V13, continuous
              vv
clus           R0 R1 R2 RX
  GC MUTATED    5  0  0  0
  GC WILD-TYPE 97  5  4 10
D168V14, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  R0          5           97
  R1          0            5
  R2          0            4
  RX          0           10

Clustering(169) Variable = LCE1F MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2              0  1
  LCE1F MUTATED    1  2
  LCE1F WILD-TYPE 98 48
  LCE1F MUTATED LCE1F WILD-TYPE 
              3             146 
  LCE1F MUTATED LCE1F WILD-TYPE 
              2              48 
$`LCE1F MUTATED`
TCGA-38-4626 TCGA-49-4506 TCGA-50-6593 
       85.32        32.84        11.05 

$`LCE1F WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LCE1F MUTATED LCE1F WILD-TYPE 
          11.05            0.07 
  LCE1F MUTATED LCE1F WILD-TYPE 
          85.32           83.84 
  LCE1F MUTATED LCE1F WILD-TYPE 
          32.84           13.51 
[1] "11.1 - 85.3 (32.8)" "0.1 - 83.8 (13.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
[1] "hr=" "1.4"
D169V2, continuous
D169V3, binary
                 cls
clus               0  1
  LCE1F MUTATED    4  0
  LCE1F WILD-TYPE 89 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1F MUTATED      4    0
  LCE1F WILD-TYPE   89   79
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  FEMALE             4              89
  MALE               0              79
D169V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LCE1F MUTATED                            0                                 1
  LCE1F WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LCE1F MUTATED                                                    2
  LCE1F WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LCE1F MUTATED                                            0
  LCE1F WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LCE1F MUTATED                                               0
  LCE1F WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LCE1F MUTATED                                0
  LCE1F WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LCE1F MUTATED                                    0
  LCE1F WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LCE1F MUTATED                              0                             1
  LCE1F WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LCE1F MUTATED                                               0
  LCE1F WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  LCE1F MUTATED                                   0
  LCE1F WILD-TYPE                                 2
D169V5, multiclass
                 vv
clus               T1  T2  T3  T4
  LCE1F MUTATED     1   2   1   0
  LCE1F WILD-TYPE  40 106  13   8
D169V6, multiclass
    clus
vv   LCE1F MUTATED LCE1F WILD-TYPE
  T1             1              40
  T2             2             106
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  LCE1F MUTATED    1  1     2
  LCE1F WILD-TYPE 94 36    33
D169V7, multiclass
       clus
vv      LCE1F MUTATED LCE1F WILD-TYPE
  N0                1              94
  N1                1              36
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  LCE1F MUTATED     4   0   0
  LCE1F WILD-TYPE 133   9  22
D169V8, multiclass
    clus
vv   LCE1F MUTATED LCE1F WILD-TYPE
  M0             4             133
  M1             0               9
  MX             0              22
                 vv
clus               I II III IV
  LCE1F MUTATED    0  2   2  0
  LCE1F WILD-TYPE 88 31  37  9
D169V9, multiclass
     clus
vv    LCE1F MUTATED LCE1F WILD-TYPE
  I               0              88
  II              2              31
  III             2              37
  IV              0               9
D169V10, binary
                 cls
clus                0   1
  LCE1F MUTATED     0   4
  LCE1F WILD-TYPE  16 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1F MUTATED      0    4
  LCE1F WILD-TYPE   16  152
     clus
vv    LCE1F MUTATED LCE1F WILD-TYPE
  NO              0              16
  YES             4             152
D169V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LCE1F MUTATED                                             2
  LCE1F WILD-TYPE                                          60
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LCE1F MUTATED                                        0              2
  LCE1F WILD-TYPE                                     46             26
                 vv
clus              LIFELONG NON-SMOKER
  LCE1F MUTATED                     0
  LCE1F WILD-TYPE                  24
D169V12, multiclass
                                             clus
vv                                            LCE1F MUTATED LCE1F WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D169V13, continuous
[1] "Remove cluster labels:" "LCE1F MUTATED"         
clus
  LCE1F MUTATED LCE1F WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-44-2655      TCGA-44-2656 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  LCE1F MUTATED     1   1   1   0
  LCE1F WILD-TYPE 101   4   3  10
D169V14, multiclass
    clus
vv   LCE1F MUTATED LCE1F WILD-TYPE
  R0             1             101
  R1             1               4
  R2             1               3
  RX             0              10

Clustering(170) Variable = RBM19 MUTATION ANALYSIS
D170V1, survival
                 sevent
clus2              0  1
  RBM19 MUTATED    6  5
  RBM19 WILD-TYPE 93 45
  RBM19 MUTATED RBM19 WILD-TYPE 
             11             138 
  RBM19 MUTATED RBM19 WILD-TYPE 
              5              45 
$`RBM19 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-05-4424 TCGA-44-6777 TCGA-49-4488 
        9.96        24.03        14.93        30.02        32.45        28.57 
TCGA-49-6742 TCGA-50-5049 TCGA-67-3771 TCGA-73-4658 TCGA-91-6836 
       15.02        48.82         1.97        52.57         0.36 

$`RBM19 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05         2.96         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  RBM19 MUTATED RBM19 WILD-TYPE 
           0.36            0.07 
  RBM19 MUTATED RBM19 WILD-TYPE 
          52.57           85.32 
  RBM19 MUTATED RBM19 WILD-TYPE 
          24.03           13.07 
[1] "0.4 - 52.6 (24.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
[1] "hr=" "1.1"
D170V2, continuous
D170V3, binary
                 cls
clus               0  1
  RBM19 MUTATED    6  8
  RBM19 WILD-TYPE 87 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM19 MUTATED      6    8
  RBM19 WILD-TYPE   87   71
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D170V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RBM19 MUTATED                            0                                 7
  RBM19 WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RBM19 MUTATED                                                    6
  RBM19 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RBM19 MUTATED                                            0
  RBM19 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RBM19 MUTATED                                               0
  RBM19 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RBM19 MUTATED                                0
  RBM19 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RBM19 MUTATED                                    0
  RBM19 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RBM19 MUTATED                              0                             0
  RBM19 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RBM19 MUTATED                                               0
  RBM19 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  RBM19 MUTATED                                   1
  RBM19 WILD-TYPE                                 1
D170V5, multiclass
                 vv
clus               T1  T2  T3  T4
  RBM19 MUTATED     4   8   1   1
  RBM19 WILD-TYPE  37 100  13   7
D170V6, multiclass
    clus
vv   RBM19 MUTATED RBM19 WILD-TYPE
  T1             4              37
  T2             8             100
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  RBM19 MUTATED    9  4     0
  RBM19 WILD-TYPE 86 33    35
D170V7, multiclass
       clus
vv      RBM19 MUTATED RBM19 WILD-TYPE
  N0                9              86
  N1                4              33
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  RBM19 MUTATED    10   0   4
  RBM19 WILD-TYPE 127   9  18
D170V8, multiclass
    clus
vv   RBM19 MUTATED RBM19 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             4              18
                 vv
clus               I II III IV
  RBM19 MUTATED    9  4   1  0
  RBM19 WILD-TYPE 79 29  38  9
D170V9, multiclass
     clus
vv    RBM19 MUTATED RBM19 WILD-TYPE
  I               9              79
  II              4              29
  III             1              38
  IV              0               9
D170V10, binary
                 cls
clus                0   1
  RBM19 MUTATED     2  12
  RBM19 WILD-TYPE  14 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM19 MUTATED      2   12
  RBM19 WILD-TYPE   14  144
     clus
vv    RBM19 MUTATED RBM19 WILD-TYPE
  NO              2              14
  YES            12             144
D170V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RBM19 MUTATED                                             5
  RBM19 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RBM19 MUTATED                                        6              2
  RBM19 WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  RBM19 MUTATED                     0
  RBM19 WILD-TYPE                  24
D170V12, multiclass
                                             clus
vv                                            RBM19 MUTATED RBM19 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D170V13, continuous
                 vv
clus              R0 R1 R2 RX
  RBM19 MUTATED    8  1  0  1
  RBM19 WILD-TYPE 94  4  4  9
D170V14, multiclass
    clus
vv   RBM19 MUTATED RBM19 WILD-TYPE
  R0             8              94
  R1             1               4
  R2             0               4
  RX             1               9

Clustering(171) Variable = C2ORF51 MUTATION ANALYSIS
D171V1, survival
                   sevent
clus2                0  1
  C2ORF51 MUTATED    3  1
  C2ORF51 WILD-TYPE 96 49
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                4               145 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                49 
$`C2ORF51 MUTATED`
TCGA-05-4396 TCGA-35-5375 TCGA-38-4625 TCGA-67-6217 
        9.96         8.68        47.61        13.87 

$`C2ORF51 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
             8.68              0.07 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
            47.61             85.32 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
           11.915            14.010 
[1] "8.7 - 47.6 (11.9)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
[1] "hr=" "1.3"
D171V2, continuous
D171V3, binary
                   cls
clus                 0  1
  C2ORF51 MUTATED    2  3
  C2ORF51 WILD-TYPE 91 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      2    3
  C2ORF51 WILD-TYPE   91   76
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  FEMALE               2                91
  MALE                 3                76
D171V4, continuous
[1] "Remove cluster labels:" "C2ORF51 MUTATED"       
clus
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C2ORF51 MUTATED                            0
  C2ORF51 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C2ORF51 MUTATED                                   2
  C2ORF51 WILD-TYPE                                37
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C2ORF51 MUTATED                                                    3
  C2ORF51 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C2ORF51 MUTATED                                            0
  C2ORF51 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C2ORF51 MUTATED                                               0
  C2ORF51 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C2ORF51 MUTATED                                0
  C2ORF51 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C2ORF51 MUTATED                                    0
  C2ORF51 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C2ORF51 MUTATED                              0                             0
  C2ORF51 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C2ORF51 MUTATED                                               0
  C2ORF51 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  C2ORF51 MUTATED                                   0
  C2ORF51 WILD-TYPE                                 2
D171V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  C2ORF51 MUTATED     0   4   0   1
  C2ORF51 WILD-TYPE  41 104  14   7
D171V6, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  T1               0                41
  T2               4               104
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  C2ORF51 MUTATED    2  2     1
  C2ORF51 WILD-TYPE 93 35    34
D171V7, multiclass
       clus
vv      C2ORF51 MUTATED C2ORF51 WILD-TYPE
  N0                  2                93
  N1                  2                35
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  C2ORF51 MUTATED     5   0   0
  C2ORF51 WILD-TYPE 132   9  22
D171V8, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  M0               5               132
  M1               0                 9
  MX               0                22
                   vv
clus                 I II III IV
  C2ORF51 MUTATED    2  1   2  0
  C2ORF51 WILD-TYPE 86 32  37  9
D171V9, multiclass
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D171V10, binary
                   cls
clus                  0   1
  C2ORF51 MUTATED     0   5
  C2ORF51 WILD-TYPE  16 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      0    5
  C2ORF51 WILD-TYPE   16  151
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  NO                0                16
  YES               5               151
D171V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C2ORF51 MUTATED                                             2
  C2ORF51 WILD-TYPE                                          60
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C2ORF51 MUTATED                                        2              1
  C2ORF51 WILD-TYPE                                     44             27
                   vv
clus                LIFELONG NON-SMOKER
  C2ORF51 MUTATED                     0
  C2ORF51 WILD-TYPE                  24
D171V12, multiclass
                                             clus
vv                                            C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D171V13, continuous
                   vv
clus                R0 R1 R2 RX
  C2ORF51 MUTATED    4  0  0  1
  C2ORF51 WILD-TYPE 98  5  4  9
D171V14, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  R0               4                98
  R1               0                 5
  R2               0                 4
  RX               1                 9

Clustering(172) Variable = CNKSR2 MUTATION ANALYSIS
D172V1, survival
                  sevent
clus2               0  1
  CNKSR2 MUTATED    5  3
  CNKSR2 WILD-TYPE 94 47
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               8              141 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               3               47 
$`CNKSR2 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-44-6144 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        9.96        11.64         0.30        43.20        12.13        12.99 
TCGA-91-6829 TCGA-91-6831 
       41.33         1.28 

$`CNKSR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        6.44         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.46        29.75        15.02         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6835 TCGA-91-6836 
        1.22         1.15         0.36 

  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
            0.30             0.07 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
           43.20            85.32 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
          11.885           14.070 
[1] "0.3 - 43.2 (11.9)" "0.1 - 85.3 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
[1] "hr=" "1.4"
D172V2, continuous
D172V3, binary
                  cls
clus                0  1
  CNKSR2 MUTATED    4  4
  CNKSR2 WILD-TYPE 89 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      4    4
  CNKSR2 WILD-TYPE   89   75
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  FEMALE              4               89
  MALE                4               75
D172V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CNKSR2 MUTATED                            0                                 2
  CNKSR2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNKSR2 MUTATED                                                    3
  CNKSR2 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CNKSR2 MUTATED                                            0
  CNKSR2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CNKSR2 MUTATED                                               1
  CNKSR2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CNKSR2 MUTATED                                1
  CNKSR2 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CNKSR2 MUTATED                                    0
  CNKSR2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CNKSR2 MUTATED                              0                             1
  CNKSR2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CNKSR2 MUTATED                                               0
  CNKSR2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  CNKSR2 MUTATED                                   0
  CNKSR2 WILD-TYPE                                 2
D172V5, multiclass
                  vv
clus                T1  T2  T3  T4
  CNKSR2 MUTATED     3   4   0   1
  CNKSR2 WILD-TYPE  38 104  14   7
D172V6, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  T1              3               38
  T2              4              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CNKSR2 MUTATED    5  2     1
  CNKSR2 WILD-TYPE 90 35    34
D172V7, multiclass
       clus
vv      CNKSR2 MUTATED CNKSR2 WILD-TYPE
  N0                 5               90
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  CNKSR2 MUTATED     4   0   4
  CNKSR2 WILD-TYPE 133   9  18
D172V8, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              4               18
                  vv
clus                I II III IV
  CNKSR2 MUTATED    5  1   2  0
  CNKSR2 WILD-TYPE 83 32  37  9
D172V9, multiclass
     clus
vv    CNKSR2 MUTATED CNKSR2 WILD-TYPE
  I                5               83
  II               1               32
  III              2               37
  IV               0                9
D172V10, binary
                  cls
clus                 0   1
  CNKSR2 MUTATED     0   8
  CNKSR2 WILD-TYPE  16 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      0    8
  CNKSR2 WILD-TYPE   16  148
     clus
vv    CNKSR2 MUTATED CNKSR2 WILD-TYPE
  NO               0               16
  YES              8              148
D172V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CNKSR2 MUTATED                                             4
  CNKSR2 WILD-TYPE                                          58
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CNKSR2 MUTATED                                        2              2
  CNKSR2 WILD-TYPE                                     44             26
                  vv
clus               LIFELONG NON-SMOKER
  CNKSR2 MUTATED                     0
  CNKSR2 WILD-TYPE                  24
D172V12, multiclass
                                             clus
vv                                            CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D172V13, continuous
                  vv
clus                R0  R1  R2  RX
  CNKSR2 MUTATED     2   0   0   3
  CNKSR2 WILD-TYPE 100   5   4   7
D172V14, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  R0              2              100
  R1              0                5
  R2              0                4
  RX              3                7

Clustering(173) Variable = DIO2 MUTATION ANALYSIS
D173V1, survival
                sevent
clus2             0  1
  DIO2 MUTATED    5  1
  DIO2 WILD-TYPE 94 49
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            143 
  DIO2 MUTATED DIO2 WILD-TYPE 
             1             49 
$`DIO2 MUTATED`
TCGA-05-4382 TCGA-38-4630 TCGA-44-2656 TCGA-44-3918 TCGA-44-6776 TCGA-73-4670 
       19.92        35.28        19.10         6.44        63.72         0.46 

$`DIO2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        28.37        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  DIO2 MUTATED DIO2 WILD-TYPE 
          0.46           0.07 
  DIO2 MUTATED DIO2 WILD-TYPE 
         63.72          85.32 
  DIO2 MUTATED DIO2 WILD-TYPE 
         19.51          13.15 
[1] "0.5 - 63.7 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
[1] "hr=" "2.5"
D173V2, continuous
D173V3, binary
                cls
clus              0  1
  DIO2 MUTATED    4  2
  DIO2 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      4    2
  DIO2 WILD-TYPE   89   77
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D173V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DIO2 MUTATED                            0                                 1
  DIO2 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DIO2 MUTATED                                                    4
  DIO2 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DIO2 MUTATED                                            0
  DIO2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DIO2 MUTATED                                               0
  DIO2 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  DIO2 MUTATED                                0
  DIO2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  DIO2 MUTATED                                    0
  DIO2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DIO2 MUTATED                              0                             1
  DIO2 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DIO2 MUTATED                                               0
  DIO2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  DIO2 MUTATED                                   0
  DIO2 WILD-TYPE                                 2
D173V5, multiclass
                vv
clus              T1  T2  T3  T4
  DIO2 MUTATED     2   4   0   0
  DIO2 WILD-TYPE  39 104  14   8
D173V6, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  DIO2 MUTATED    6  0     0
  DIO2 WILD-TYPE 89 37    35
D173V7, multiclass
       clus
vv      DIO2 MUTATED DIO2 WILD-TYPE
  N0               6             89
  N1               0             37
  N2+N3            0             35
                vv
clus              M0  M1  MX
  DIO2 MUTATED     3   1   1
  DIO2 WILD-TYPE 134   8  21
D173V8, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  M0            3            134
  M1            1              8
  MX            1             21
                vv
clus              I II III IV
  DIO2 MUTATED    5  0   0  1
  DIO2 WILD-TYPE 83 33  39  8
D173V9, multiclass
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  I              5             83
  II             0             33
  III            0             39
  IV             1              8
D173V10, binary
                cls
clus               0   1
  DIO2 MUTATED     0   6
  DIO2 WILD-TYPE  16 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      0    6
  DIO2 WILD-TYPE   16  150
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  NO             0             16
  YES            6            150
D173V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  DIO2 MUTATED                                             4
  DIO2 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  DIO2 MUTATED                                        1              0
  DIO2 WILD-TYPE                                     45             28
                vv
clus             LIFELONG NON-SMOKER
  DIO2 MUTATED                     1
  DIO2 WILD-TYPE                  23
D173V12, multiclass
                                             clus
vv                                            DIO2 MUTATED DIO2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    1             23
D173V13, continuous
                vv
clus             R0 R1 R2 RX
  DIO2 MUTATED    3  1  0  0
  DIO2 WILD-TYPE 99  4  4 10
D173V14, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  R0            3             99
  R1            1              4
  R2            0              4
  RX            0             10

Clustering(174) Variable = FRG1 MUTATION ANALYSIS
D174V1, survival
                sevent
clus2             0  1
  FRG1 MUTATED    3  3
  FRG1 WILD-TYPE 96 47
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            143 
  FRG1 MUTATED FRG1 WILD-TYPE 
             3             47 
$`FRG1 MUTATED`
TCGA-05-4390 TCGA-44-2659 TCGA-44-6145 TCGA-50-6594 TCGA-50-6595 TCGA-73-4677 
       37.02        17.39         3.35        12.16         6.21         1.25 

$`FRG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FRG1 MUTATED FRG1 WILD-TYPE 
          1.25           0.07 
  FRG1 MUTATED FRG1 WILD-TYPE 
         37.02          85.32 
  FRG1 MUTATED FRG1 WILD-TYPE 
         9.185         14.010 
[1] "1.2 - 37.0 (9.2)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
[1] "hr=" "2.7"
D174V2, continuous
D174V3, binary
                cls
clus              0  1
  FRG1 MUTATED    5  1
  FRG1 WILD-TYPE 88 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      5    1
  FRG1 WILD-TYPE   88   78
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  FEMALE            5             88
  MALE              1             78
D174V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FRG1 MUTATED                            0                                 1
  FRG1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FRG1 MUTATED                                                    5
  FRG1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FRG1 MUTATED                                            0
  FRG1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FRG1 MUTATED                                               0
  FRG1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FRG1 MUTATED                                0
  FRG1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FRG1 MUTATED                                    0
  FRG1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FRG1 MUTATED                              0                             0
  FRG1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FRG1 MUTATED                                               0
  FRG1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  FRG1 MUTATED                                   0
  FRG1 WILD-TYPE                                 2
D174V5, multiclass
                vv
clus              T1  T2  T3  T4
  FRG1 MUTATED     2   3   1   0
  FRG1 WILD-TYPE  39 105  13   8
D174V6, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  T1            2             39
  T2            3            105
  T3            1             13
  T4            0              8
                vv
clus             N0 N1 N2+N3
  FRG1 MUTATED    3  1     2
  FRG1 WILD-TYPE 92 36    33
D174V7, multiclass
       clus
vv      FRG1 MUTATED FRG1 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            2             33
                vv
clus              M0  M1  MX
  FRG1 MUTATED     6   0   0
  FRG1 WILD-TYPE 131   9  22
D174V8, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  FRG1 MUTATED    3  1   2  0
  FRG1 WILD-TYPE 85 32  37  9
D174V9, multiclass
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  I              3             85
  II             1             32
  III            2             37
  IV             0              9
D174V10, binary
                cls
clus               0   1
  FRG1 MUTATED     0   6
  FRG1 WILD-TYPE  16 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      0    6
  FRG1 WILD-TYPE   16  150
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  NO             0             16
  YES            6            150
D174V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FRG1 MUTATED                                             4
  FRG1 WILD-TYPE                                          58
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FRG1 MUTATED                                        2              0
  FRG1 WILD-TYPE                                     44             28
                vv
clus             LIFELONG NON-SMOKER
  FRG1 MUTATED                     0
  FRG1 WILD-TYPE                  24
D174V12, multiclass
                                             clus
vv                                            FRG1 MUTATED FRG1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D174V13, continuous
                vv
clus             R0 R1 R2 RX
  FRG1 MUTATED    3  0  0  0
  FRG1 WILD-TYPE 99  5  4 10
D174V14, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  R0            3             99
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(175) Variable = PIP MUTATION ANALYSIS
D175V1, survival
               sevent
clus2            0  1
  PIP MUTATED    1  2
  PIP WILD-TYPE 98 48
  PIP MUTATED PIP WILD-TYPE 
            3           146 
  PIP MUTATED PIP WILD-TYPE 
            2            48 
$`PIP MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-50-6592 
        9.96        47.05        25.51 

$`PIP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PIP MUTATED PIP WILD-TYPE 
         9.96          0.07 
  PIP MUTATED PIP WILD-TYPE 
        47.05         85.32 
  PIP MUTATED PIP WILD-TYPE 
        25.51         13.51 
[1] "10.0 - 47.0 (25.5)" "0.1 - 85.3 (13.5)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
[1] "hr=" "1.4"
D175V2, continuous
D175V3, binary
               cls
clus             0  1
  PIP MUTATED    2  3
  PIP WILD-TYPE 91 76
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      2    3
  PIP WILD-TYPE   91   76
        clus
vv       PIP MUTATED PIP WILD-TYPE
  FEMALE           2            91
  MALE             3            76
D175V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PIP MUTATED                            0                                 4
  PIP WILD-TYPE                          2                                35
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PIP MUTATED                                                    1
  PIP WILD-TYPE                                                113
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PIP MUTATED                                            0
  PIP WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PIP MUTATED                                               0
  PIP WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  PIP MUTATED                                0
  PIP WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  PIP MUTATED                                    0                            0
  PIP WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  PIP MUTATED                               0
  PIP WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PIP MUTATED                                               0
  PIP WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) ADENOCARCINOMA
  PIP MUTATED                                   0
  PIP WILD-TYPE                                 2
D175V5, multiclass
               vv
clus             T1  T2  T3  T4
  PIP MUTATED     0   3   0   2
  PIP WILD-TYPE  41 105  14   6
D175V6, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  T1           0            41
  T2           3           105
  T3           0            14
  T4           2             6
               vv
clus            N0 N1 N2+N3
  PIP MUTATED    3  1     1
  PIP WILD-TYPE 92 36    34
D175V7, multiclass
       clus
vv      PIP MUTATED PIP WILD-TYPE
  N0              3            92
  N1              1            36
  N2+N3           1            34
               vv
clus             M0  M1  MX
  PIP MUTATED     5   0   0
  PIP WILD-TYPE 132   9  22
D175V8, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  M0           5           132
  M1           0             9
  MX           0            22
               vv
clus             I II III IV
  PIP MUTATED    3  0   2  0
  PIP WILD-TYPE 85 33  37  9
D175V9, multiclass
     clus
vv    PIP MUTATED PIP WILD-TYPE
  I             3            85
  II            0            33
  III           2            37
  IV            0             9
D175V10, binary
               cls
clus              0   1
  PIP MUTATED     0   5
  PIP WILD-TYPE  16 151
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      0    5
  PIP WILD-TYPE   16  151
     clus
vv    PIP MUTATED PIP WILD-TYPE
  NO            0            16
  YES           5           151
D175V11, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PIP MUTATED                                             2
  PIP WILD-TYPE                                          60
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PIP MUTATED                                        2              1
  PIP WILD-TYPE                                     44             27
               vv
clus            LIFELONG NON-SMOKER
  PIP MUTATED                     0
  PIP WILD-TYPE                  24
D175V12, multiclass
                                             clus
vv                                            PIP MUTATED PIP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           2            60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            44
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   0            24
D175V13, continuous
[1] "Remove cluster labels:" "PIP MUTATED"           
clus
  PIP MUTATED PIP WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4424    TCGA-05-4427    TCGA-05-4433    TCGA-05-5420    TCGA-05-5423 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5428    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5645    TCGA-44-6144 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6642    TCGA-55-6712    TCGA-64-1677 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-91-6829 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6836 
"PIP WILD-TYPE" 
               vv
clus            R0 R1 R2 RX
  PIP MUTATED    3  0  0  1
  PIP WILD-TYPE 99  5  4  9
D175V14, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  R0           3            99
  R1           0             5
  R2           0             4
  RX           1             9

Clustering(176) Variable = SLITRK2 MUTATION ANALYSIS
D176V1, survival
                   sevent
clus2                0  1
  SLITRK2 MUTATED   11  7
  SLITRK2 WILD-TYPE 88 43
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               18               131 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                7                43 
$`SLITRK2 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 
        3.98         9.96        24.03        20.05        14.93        29.95 
TCGA-05-4430 TCGA-38-4626 TCGA-44-2657 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
       25.02        85.32        13.15         9.76        77.88         9.37 
TCGA-55-1592 TCGA-55-6642 TCGA-64-1677 TCGA-64-5778 TCGA-67-6217 TCGA-91-6829 
       23.05        32.61        20.65        30.44        13.87        41.33 

$`SLITRK2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        2.96         8.98        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       38.73        48.62        45.17         2.86         0.07         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       56.81        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
             3.98              0.07 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            85.32             83.84 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            21.85             12.26 
[1] "4.0 - 85.3 (21.9)" "0.1 - 83.8 (12.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
[1] "hr=" "1.3"
D176V2, continuous
D176V3, binary
                   cls
clus                 0  1
  SLITRK2 MUTATED    9 10
  SLITRK2 WILD-TYPE 84 69
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      9   10
  SLITRK2 WILD-TYPE   84   69
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  FEMALE               9                84
  MALE                10                69
D176V4, continuous
[1] "Remove cluster labels:" "SLITRK2 MUTATED"       
clus
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-71-6725 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLITRK2 MUTATED                            0
  SLITRK2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLITRK2 MUTATED                                   7
  SLITRK2 WILD-TYPE                                32
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLITRK2 MUTATED                                                    9
  SLITRK2 WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLITRK2 MUTATED                                            0
  SLITRK2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLITRK2 MUTATED                                               2
  SLITRK2 WILD-TYPE                                             0
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLITRK2 MUTATED                                0
  SLITRK2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLITRK2 MUTATED                                    0
  SLITRK2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLITRK2 MUTATED                              0                             0
  SLITRK2 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLITRK2 MUTATED                                               1
  SLITRK2 WILD-TYPE                                             0
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  SLITRK2 MUTATED                                   0
  SLITRK2 WILD-TYPE                                 2
D176V5, multiclass
                   vv
clus                T1 T2 T3 T4
  SLITRK2 MUTATED    0 16  1  2
  SLITRK2 WILD-TYPE 41 92 13  6
D176V6, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  T1               0                41
  T2              16                92
  T3               1                13
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  SLITRK2 MUTATED   11  4     3
  SLITRK2 WILD-TYPE 84 33    32
D176V7, multiclass
       clus
vv      SLITRK2 MUTATED SLITRK2 WILD-TYPE
  N0                 11                84
  N1                  4                33
  N2+N3               3                32
                   vv
clus                 M0  M1  MX
  SLITRK2 MUTATED    17   0   2
  SLITRK2 WILD-TYPE 120   9  20
D176V8, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  M0              17               120
  M1               0                 9
  MX               2                20
                   vv
clus                 I II III IV
  SLITRK2 MUTATED   11  3   5  0
  SLITRK2 WILD-TYPE 77 30  34  9
D176V9, multiclass
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  I                11                77
  II                3                30
  III               5                34
  IV                0                 9
D176V10, binary
                   cls
clus                  0   1
  SLITRK2 MUTATED     1  18
  SLITRK2 WILD-TYPE  15 138
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      1   18
  SLITRK2 WILD-TYPE   15  138
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  NO                1                15
  YES              18               138
D176V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLITRK2 MUTATED                                             9
  SLITRK2 WILD-TYPE                                          53
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLITRK2 MUTATED                                        2              6
  SLITRK2 WILD-TYPE                                     44             22
                   vv
clus                LIFELONG NON-SMOKER
  SLITRK2 MUTATED                     1
  SLITRK2 WILD-TYPE                  23
D176V12, multiclass
                                             clus
vv                                            SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            6                22
  LIFELONG NON-SMOKER                                       1                23
D176V13, continuous
                   vv
clus                R0 R1 R2 RX
  SLITRK2 MUTATED   14  0  1  0
  SLITRK2 WILD-TYPE 88  5  3 10
D176V14, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  R0              14                88
  R1               0                 5
  R2               1                 3
  RX               0                10

Clustering(177) Variable = GABRA5 MUTATION ANALYSIS
D177V1, survival
                  sevent
clus2               0  1
  GABRA5 MUTATED    7  3
  GABRA5 WILD-TYPE 92 47
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              10              139 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               3               47 
$`GABRA5 MUTATED`
TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 TCGA-38-4632 TCGA-44-4112 TCGA-49-4494 
       26.01         2.04         7.36        44.61         4.60        35.54 
TCGA-50-5049 TCGA-50-5931 TCGA-55-6642 TCGA-67-3770 
       48.82         8.78        32.61         0.99 

$`GABRA5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.07 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           48.82            85.32 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
          17.395           13.870 
[1] "1.0 - 48.8 (17.4)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
[1] "hr=" "1.2"
D177V2, continuous
D177V3, binary
                  cls
clus                0  1
  GABRA5 MUTATED    5  6
  GABRA5 WILD-TYPE 88 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    6
  GABRA5 WILD-TYPE   88   73
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5               88
  MALE                6               73
D177V4, continuous
[1] "Remove cluster labels:" "GABRA5 MUTATED"        
clus
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GABRA5 MUTATED                            0                                 2
  GABRA5 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRA5 MUTATED                                                    9
  GABRA5 WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GABRA5 MUTATED                                            0
  GABRA5 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GABRA5 MUTATED                                               0
  GABRA5 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GABRA5 MUTATED                                0
  GABRA5 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GABRA5 MUTATED                                    0
  GABRA5 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GABRA5 MUTATED                              0                             0
  GABRA5 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GABRA5 MUTATED                                               0
  GABRA5 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  GABRA5 MUTATED                                   0
  GABRA5 WILD-TYPE                                 2
D177V5, multiclass
                  vv
clus                T1  T2  T3  T4
  GABRA5 MUTATED     2   8   1   0
  GABRA5 WILD-TYPE  39 100  13   8
D177V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              2               39
  T2              8              100
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  GABRA5 MUTATED    8  2     1
  GABRA5 WILD-TYPE 87 35    34
D177V7, multiclass
       clus
vv      GABRA5 MUTATED GABRA5 WILD-TYPE
  N0                 8               87
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  GABRA5 MUTATED     9   1   1
  GABRA5 WILD-TYPE 128   8  21
D177V8, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  M0              9              128
  M1              1                8
  MX              1               21
                  vv
clus                I II III IV
  GABRA5 MUTATED    8  1   1  1
  GABRA5 WILD-TYPE 80 32  38  8
D177V9, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                8               80
  II               1               32
  III              1               38
  IV               1                8
D177V10, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     1  10
  GABRA5 WILD-TYPE  15 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      1   10
  GABRA5 WILD-TYPE   15  146
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  NO               1               15
  YES             10              146
D177V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRA5 MUTATED                                             3
  GABRA5 WILD-TYPE                                          59
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRA5 MUTATED                                        4              1
  GABRA5 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  GABRA5 MUTATED                     1
  GABRA5 WILD-TYPE                  23
D177V12, multiclass
                                             clus
vv                                            GABRA5 MUTATED GABRA5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D177V13, continuous
                  vv
clus               R0 R1 R2 RX
  GABRA5 MUTATED    8  0  0  0
  GABRA5 WILD-TYPE 94  5  4 10
D177V14, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  R0              8               94
  R1              0                5
  R2              0                4
  RX              0               10

Clustering(178) Variable = OR4A16 MUTATION ANALYSIS
D178V1, survival
                  sevent
clus2               0  1
  OR4A16 MUTATED    6  2
  OR4A16 WILD-TYPE 93 48
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              141 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               2               48 
$`OR4A16 MUTATED`
TCGA-05-4382 TCGA-05-4424 TCGA-05-4432 TCGA-05-5420 TCGA-35-4123 TCGA-50-6593 
       19.92        30.02        25.02         1.02         5.95        11.05 
TCGA-50-6594 TCGA-64-5781 
       12.16        39.52 

$`OR4A16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       42.31         3.88        25.51         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR4A16 MUTATED OR4A16 WILD-TYPE 
            1.02             0.07 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
           39.52            85.32 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
           16.04            13.87 
[1] "1.0 - 39.5 (16.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
[1] "hr=" "1.1"
D178V2, continuous
D178V3, binary
                  cls
clus                0  1
  OR4A16 MUTATED    3  5
  OR4A16 WILD-TYPE 90 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A16 MUTATED      3    5
  OR4A16 WILD-TYPE   90   74
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  FEMALE              3               90
  MALE                5               74
D178V4, continuous
[1] "Remove cluster labels:" "OR4A16 MUTATED"        
clus
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4A16 MUTATED                            0                                 5
  OR4A16 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4A16 MUTATED                                                    3
  OR4A16 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4A16 MUTATED                                            0
  OR4A16 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4A16 MUTATED                                               0
  OR4A16 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4A16 MUTATED                                0
  OR4A16 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4A16 MUTATED                                    0
  OR4A16 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4A16 MUTATED                              0                             0
  OR4A16 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4A16 MUTATED                                               0
  OR4A16 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) ADENOCARCINOMA
  OR4A16 MUTATED                                   0
  OR4A16 WILD-TYPE                                 2
D178V5, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4A16 MUTATED     2   4   2   0
  OR4A16 WILD-TYPE  39 104  12   8
D178V6, multiclass
    clus
vv   OR4A16 MUTATED OR4A16 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR4A16 MUTATED    4  1     3
  OR4A16 WILD-TYPE 91 36    32
D178V7, multiclass
       clus
vv      OR4A16 MUTATED OR4A16 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  OR4A16 MUTATED     8   0   0
  OR4A16 WILD-TYPE 129   9  22
D178V8, multiclass
    clus
vv   OR4A16 MUTATED OR4A16 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
                  vv
clus                I II III IV
  OR4A16 MUTATED    3  2   3  0
  OR4A16 WILD-TYPE 85 31  36  9
D178V9, multiclass
     clus
vv    OR4A16 MUTATED OR4A16 WILD-TYPE
  I                3               85
  II               2               31
  III              3               36
  IV               0                9
D178V10, binary
                  cls
clus                 0   1
  OR4A16 MUTATED     0   8
  OR4A16 WILD-TYPE  16 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A16 MUTATED      0    8
  OR4A16 WILD-TYPE   16  148
     clus
vv    OR4A16 MUTATED OR4A16 WILD-TYPE
  NO               0               16
  YES              8              148
D178V11, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4A16 MUTATED                                             7
  OR4A16 WILD-TYPE                                          55
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4A16 MUTATED                                        0              1
  OR4A16 WILD-TYPE                                     46             27
                  vv
clus               LIFELONG NON-SMOKER
  OR4A16 MUTATED                     0
  OR4A16 WILD-TYPE                  24
D178V12, multiclass
                                             clus
vv                                            OR4A16 MUTATED OR4A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D178V13, continuous
                  vv
clus               R0 R1 R2 RX
  OR4A16 MUTATED    5  1  0  0
  OR4A16 WILD-TYPE 97  4  4 10
D178V14, multiclass
    clus
vv   OR4A16 MUTATED OR4A16 WILD-TYPE
  R0              5               97
  R1              1                4
  R2              0                4
  RX              0               10

Clustering(179) Variable = MBD1 MUTATION ANALYSIS
D179V1, survival
                sevent
clus2             0  1
  MBD1 MUTATED    3  2
  MBD1 WILD-TYPE 96 48
  MBD1 MUTATED MBD1 WILD-TYPE 
             5            144 
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             48 
$`MBD1 MUTATED`
TCGA-49-4487 TCGA-55-1592 TCGA-55-5899 TCGA-67-3771 TCGA-73-4662 
       28.11        23.05         2.86         1.97        29.95 

$`MBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MBD1 MUTATED MBD1 WILD-TYPE 
          1.97           0.07 
  MBD1 MUTATED MBD1 WILD-TYPE 
         29.95          85.32 
  MBD1 MUTATED MBD1 WILD-TYPE 
         23.05          13.51 
[1] "2.0 - 29.9 (23.1)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
[1] "hr=" "1.7"
D179V2, continuous
D179V3, binary
                cls
clus              0  1
  MBD1 MUTATED    3  3
  MBD1 WILD-TYPE 90 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      3    3
  MBD1 WILD-TYPE   90   76
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  FEMALE            3             90
  MALE              3             76
D179V4, continuous
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MBD1 MUTATED                            0                                 0
  MBD1 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MBD1 MUTATED                                                    6
  MBD1 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MBD1 MUTATED                                            0
  MBD1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MBD1 MUTATED                                0
  MBD1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                                    0
  MBD1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                              0                             0
  MBD1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  MBD1 MUTATED                                   0
  MBD1 WILD-TYPE                                 2
D179V5, multiclass
                vv
clus              T1  T2  T3  T4
  MBD1 MUTATED     4   2   0   0
  MBD1 WILD-TYPE  37 106  14   8
D179V6, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  T1            4             37
  T2            2            106
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  MBD1 MUTATED    5  1     0
  MBD1 WILD-TYPE 90 36    35
D179V7, multiclass
       clus
vv      MBD1 MUTATED MBD1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  MBD1 MUTATED     6   0   0
  MBD1 WILD-TYPE 131   9  22
D179V8, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
                vv
clus              I II III IV
  MBD1 MUTATED    6  0   0  0
  MBD1 WILD-TYPE 82 33  39  9
D179V9, multiclass
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  I              6             82
  II             0             33
  III            0             39
  IV             0              9
D179V10, binary
                cls
clus               0   1
  MBD1 MUTATED     1   5
  MBD1 WILD-TYPE  15 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      1    5
  MBD1 WILD-TYPE   15  151
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  NO             1             15
  YES            5            151
D179V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MBD1 MUTATED                                             3
  MBD1 WILD-TYPE                                          59
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MBD1 MUTATED                                        2              1
  MBD1 WILD-TYPE                                     44             27
                vv
clus             LIFELONG NON-SMOKER
  MBD1 MUTATED                     0
  MBD1 WILD-TYPE                  24
D179V12, multiclass
                                             clus
vv                                            MBD1 MUTATED MBD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D179V13, continuous
                vv
clus             R0 R1 R2 RX
  MBD1 MUTATED    6  0  0  0
  MBD1 WILD-TYPE 96  5  4 10
D179V14, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  R0            6             96
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(180) Variable = NELL1 MUTATION ANALYSIS
D180V1, survival
                 sevent
clus2              0  1
  NELL1 MUTATED   10  2
  NELL1 WILD-TYPE 89 48
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             137 
  NELL1 MUTATED NELL1 WILD-TYPE 
              2              48 
$`NELL1 MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-38-4626 TCGA-38-4632 TCGA-44-4112 TCGA-50-5066 
       38.07        37.02        85.32        44.61         4.60         9.76 
TCGA-50-5941 TCGA-50-6594 TCGA-55-1596 TCGA-64-1676 TCGA-67-6217 TCGA-73-4670 
        9.37        12.16        45.17        56.81        13.87         0.46 

$`NELL1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       48.62         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NELL1 MUTATED NELL1 WILD-TYPE 
           0.46            0.07 
  NELL1 MUTATED NELL1 WILD-TYPE 
          85.32           83.84 
  NELL1 MUTATED NELL1 WILD-TYPE 
         25.445          13.150 
[1] "0.5 - 85.3 (25.4)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
[1] "hr=" "4"  
D180V2, continuous
D180V3, binary
                 cls
clus               0  1
  NELL1 MUTATED    8  6
  NELL1 WILD-TYPE 85 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      8    6
  NELL1 WILD-TYPE   85   73
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  FEMALE             8              85
  MALE               6              73
D180V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NELL1 MUTATED                            0                                 3
  NELL1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NELL1 MUTATED                                                   11
  NELL1 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NELL1 MUTATED                                            0
  NELL1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NELL1 MUTATED                                               0
  NELL1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NELL1 MUTATED                                0
  NELL1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NELL1 MUTATED                                    0
  NELL1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NELL1 MUTATED                              0                             0
  NELL1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NELL1 MUTATED                                               0
  NELL1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) ADENOCARCINOMA
  NELL1 MUTATED                                   0
  NELL1 WILD-TYPE                                 2
D180V5, multiclass
                 vv
clus              T1 T2 T3 T4
  NELL1 MUTATED    1 12  1  0
  NELL1 WILD-TYPE 40 96 13  8
D180V6, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  T1             1              40
  T2            12              96
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  NELL1 MUTATED    9  3     2
  NELL1 WILD-TYPE 86 34    33
D180V7, multiclass
       clus
vv      NELL1 MUTATED NELL1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  NELL1 MUTATED    12   2   0
  NELL1 WILD-TYPE 125   7  22
D180V8, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  M0            12             125
  M1             2               7
  MX             0              22
                 vv
clus               I II III IV
  NELL1 MUTATED    7  3   2  2
  NELL1 WILD-TYPE 81 30  37  7
D180V9, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  I               7              81
  II              3              30
  III             2              37
  IV              2               7
D180V10, binary
                 cls
clus                0   1
  NELL1 MUTATED     0  14
  NELL1 WILD-TYPE  16 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      0   14
  NELL1 WILD-TYPE   16  142
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  NO              0              16
  YES            14             142
D180V11, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NELL1 MUTATED                                             5
  NELL1 WILD-TYPE                                          57
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NELL1 MUTATED                                        3              5
  NELL1 WILD-TYPE                                     43             23
                 vv
clus              LIFELONG NON-SMOKER
  NELL1 MUTATED                     1
  NELL1 WILD-TYPE                  23
D180V12, multiclass
                                             clus
vv                                            NELL1 MUTATED NELL1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     1              23
D180V13, continuous
                 vv
clus              R0 R1 R2 RX
  NELL1 MUTATED   11  0  0  1
  NELL1 WILD-TYPE 91  5  4  9
D180V14, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  R0            11              91
  R1             0               5
  R2             0               4
  RX             1               9

Clustering(181) Variable = STXBP5L MUTATION ANALYSIS
D181V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED    9  2
  STXBP5L WILD-TYPE 90 48
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               11               138 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                48 
$`STXBP5L MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-38-4626 TCGA-44-2659 TCGA-44-4112 TCGA-44-6778 
        9.96        47.61        85.32        17.39         4.60        36.49 
TCGA-49-4505 TCGA-49-6744 TCGA-50-5941 TCGA-67-6217 TCGA-91-6836 
       14.07        12.99         9.37        13.87         0.36 

$`STXBP5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 
        2.04         0.46         7.36         5.95         8.68        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             0.36              0.07 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            85.32             83.84 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            13.87             13.58 
[1] "0.4 - 85.3 (13.9)" "0.1 - 83.8 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
[1] "hr=" "2.5"
D181V2, continuous
D181V3, binary
                   cls
clus                 0  1
  STXBP5L MUTATED    9  3
  STXBP5L WILD-TYPE 84 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      9    3
  STXBP5L WILD-TYPE   84   76
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE               9                84
  MALE                 3                76
D181V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  STXBP5L MUTATED                            0
  STXBP5L WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  STXBP5L MUTATED                                   3
  STXBP5L WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STXBP5L MUTATED                                                    9
  STXBP5L WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STXBP5L MUTATED                                            0
  STXBP5L WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  STXBP5L MUTATED                                0
  STXBP5L WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                                    0
  STXBP5L WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                              0                             0
  STXBP5L WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  STXBP5L MUTATED                                   0
  STXBP5L WILD-TYPE                                 2
D181V5, multiclass
                   vv
clus                T1 T2 T3 T4
  STXBP5L MUTATED    2  9  0  1
  STXBP5L WILD-TYPE 39 99 14  7
D181V6, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  STXBP5L MUTATED    6  5     1
  STXBP5L WILD-TYPE 89 32    34
D181V7, multiclass
       clus
vv      STXBP5L MUTATED STXBP5L WILD-TYPE
  N0                  6                89
  N1                  5                32
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  STXBP5L MUTATED     9   0   3
  STXBP5L WILD-TYPE 128   9  19
D181V8, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  M0               9               128
  M1               0                 9
  MX               3                19
                   vv
clus                 I II III IV
  STXBP5L MUTATED    5  5   2  0
  STXBP5L WILD-TYPE 83 28  37  9
D181V9, multiclass
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  I                 5                83
  II                5                28
  III               2                37
  IV                0                 9
D181V10, binary
                   cls
clus                  0   1
  STXBP5L MUTATED     0  12
  STXBP5L WILD-TYPE  16 144
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      0   12
  STXBP5L WILD-TYPE   16  144
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                0                16
  YES              12               144
D181V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  STXBP5L MUTATED                                             5
  STXBP5L WILD-TYPE                                          57
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  STXBP5L MUTATED                                        3              4
  STXBP5L WILD-TYPE                                     43             24
                   vv
clus                LIFELONG NON-SMOKER
  STXBP5L MUTATED                     0
  STXBP5L WILD-TYPE                  24
D181V12, multiclass
                                             clus
vv                                            STXBP5L MUTATED STXBP5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                24
D181V13, continuous
                   vv
clus                R0 R1 R2 RX
  STXBP5L MUTATED    7  0  0  2
  STXBP5L WILD-TYPE 95  5  4  8
D181V14, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  R0               7                95
  R1               0                 5
  R2               0                 4
  RX               2                 8

Clustering(182) Variable = SLC10A2 MUTATION ANALYSIS
D182V1, survival
                   sevent
clus2                0  1
  SLC10A2 MUTATED    6  1
  SLC10A2 WILD-TYPE 93 49
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               142 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                49 
$`SLC10A2 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-49-6743 TCGA-55-1592 TCGA-64-5778 
       30.02        26.01        19.10        12.13        23.05        30.44 
TCGA-64-5781 
       39.52 

$`SLC10A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84         0.10        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            12.13              0.07 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            39.52             85.32 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            26.01             13.07 
[1] "12.1 - 39.5 (26.0)" "0.1 - 85.3 (13.1)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
[1] "hr=" "2.9"
D182V2, continuous
D182V3, binary
                   cls
clus                 0  1
  SLC10A2 MUTATED    3  4
  SLC10A2 WILD-TYPE 90 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      3    4
  SLC10A2 WILD-TYPE   90   75
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D182V4, continuous
[1] "Remove cluster labels:" "SLC10A2 MUTATED"       
clus
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLC10A2 MUTATED                            0
  SLC10A2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLC10A2 MUTATED                                   3
  SLC10A2 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC10A2 MUTATED                                                    2
  SLC10A2 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLC10A2 MUTATED                                            0
  SLC10A2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLC10A2 MUTATED                                               1
  SLC10A2 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLC10A2 MUTATED                                1
  SLC10A2 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLC10A2 MUTATED                                    0
  SLC10A2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLC10A2 MUTATED                              0                             0
  SLC10A2 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLC10A2 MUTATED                                               0
  SLC10A2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  SLC10A2 MUTATED                                   0
  SLC10A2 WILD-TYPE                                 2
D182V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  SLC10A2 MUTATED     1   5   1   0
  SLC10A2 WILD-TYPE  40 103  13   8
D182V6, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  SLC10A2 MUTATED    5  1     1
  SLC10A2 WILD-TYPE 90 36    34
D182V7, multiclass
       clus
vv      SLC10A2 MUTATED SLC10A2 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  SLC10A2 MUTATED     6   0   1
  SLC10A2 WILD-TYPE 131   9  21
D182V8, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  SLC10A2 MUTATED    4  2   1  0
  SLC10A2 WILD-TYPE 84 31  38  9
D182V9, multiclass
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D182V10, binary
                   cls
clus                  0   1
  SLC10A2 MUTATED     0   7
  SLC10A2 WILD-TYPE  16 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      0    7
  SLC10A2 WILD-TYPE   16  149
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  NO                0                16
  YES               7               149
D182V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC10A2 MUTATED                                             7
  SLC10A2 WILD-TYPE                                          55
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC10A2 MUTATED                                        0              0
  SLC10A2 WILD-TYPE                                     46             28
                   vv
clus                LIFELONG NON-SMOKER
  SLC10A2 MUTATED                     0
  SLC10A2 WILD-TYPE                  24
D182V12, multiclass
                                             clus
vv                                            SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D182V13, continuous
                   vv
clus                R0 R1 R2 RX
  SLC10A2 MUTATED    4  1  0  0
  SLC10A2 WILD-TYPE 98  4  4 10
D182V14, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  R0               4                98
  R1               1                 4
  R2               0                 4
  RX               0                10

Clustering(183) Variable = DYTN MUTATION ANALYSIS
D183V1, survival
                sevent
clus2             0  1
  DYTN MUTATED    6  3
  DYTN WILD-TYPE 93 47
  DYTN MUTATED DYTN WILD-TYPE 
             9            140 
  DYTN MUTATED DYTN WILD-TYPE 
             3             47 
$`DYTN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-38-4626 TCGA-44-2666 TCGA-44-6779 TCGA-55-1592 
       37.02        14.93        85.32         3.19        16.41        23.05 
TCGA-64-1676 TCGA-64-5781 TCGA-91-6831 
       56.81        39.52         1.28 

$`DYTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DYTN MUTATED DYTN WILD-TYPE 
          1.28           0.07 
  DYTN MUTATED DYTN WILD-TYPE 
         85.32          83.84 
  DYTN MUTATED DYTN WILD-TYPE 
         23.05          13.07 
[1] "1.3 - 85.3 (23.1)" "0.1 - 83.8 (13.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
[1] "hr=" "1.9"
D183V2, continuous
D183V3, binary
                cls
clus              0  1
  DYTN MUTATED    5  5
  DYTN WILD-TYPE 88 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      5    5
  DYTN WILD-TYPE   88   74
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D183V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DYTN MUTATED                            0                                 3
  DYTN WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DYTN MUTATED                                                    6
  DYTN WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DYTN MUTATED                                            0
  DYTN WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DYTN MUTATED                                               0
  DYTN WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  DYTN MUTATED                                0
  DYTN WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  DYTN MUTATED                                    0
  DYTN WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DYTN MUTATED                              0                             0
  DYTN WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DYTN MUTATED                                               1
  DYTN WILD-TYPE                                             0
                vv
clus             MUCINOUS (COLLOID) ADENOCARCINOMA
  DYTN MUTATED                                   0
  DYTN WILD-TYPE                                 2
D183V5, multiclass
                vv
clus             T1 T2 T3 T4
  DYTN MUTATED    1  9  0  0
  DYTN WILD-TYPE 40 99 14  8
D183V6, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  DYTN MUTATED    9  1     0
  DYTN WILD-TYPE 86 36    35
D183V7, multiclass
       clus
vv      DYTN MUTATED DYTN WILD-TYPE
  N0               9             86
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  DYTN MUTATED     8   0   2
  DYTN WILD-TYPE 129   9  20
D183V8, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  M0            8            129
  M1            0              9
  MX            2             20
                vv
clus              I II III IV
  DYTN MUTATED    8  2   0  0
  DYTN WILD-TYPE 80 31  39  9
D183V9, multiclass
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  I              8             80
  II             2             31
  III            0             39
  IV             0              9
D183V10, binary
                cls
clus               0   1
  DYTN MUTATED     0  10
  DYTN WILD-TYPE  16 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      0   10
  DYTN WILD-TYPE   16  146
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  NO             0             16
  YES           10            146
D183V11, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  DYTN MUTATED                                             6
  DYTN WILD-TYPE                                          56
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  DYTN MUTATED                                        0              4
  DYTN WILD-TYPE                                     46             24
                vv
clus             LIFELONG NON-SMOKER
  DYTN MUTATED                     0
  DYTN WILD-TYPE                  24
D183V12, multiclass
                                             clus
vv                                            DYTN MUTATED DYTN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             46
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D183V13, continuous
                vv
clus             R0 R1 R2 RX
  DYTN MUTATED    8  0  0  0
  DYTN WILD-TYPE 94  5  4 10
D183V14, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  R0            8             94
  R1            0              5
  R2            0              4
  RX            0             10

Clustering(184) Variable = SLITRK4 MUTATION ANALYSIS
D184V1, survival
                   sevent
clus2                0  1
  SLITRK4 MUTATED    7  7
  SLITRK4 WILD-TYPE 92 43
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               14               135 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                7                43 
$`SLITRK4 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-38-4625 TCGA-38-4626 TCGA-44-6777 TCGA-50-5045 
       19.92        47.05        47.61        85.32        32.45        71.47 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 
       77.88        21.47         9.37        42.31        12.16         6.21 
TCGA-67-3771 TCGA-73-4676 
        1.97         4.01 

$`SLITRK4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        9.27         8.78        35.87         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6597 
       12.26        11.47         3.88        25.51        11.05        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         1.32         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
             1.97              0.07 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            85.32             83.84 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            26.96             13.15 
[1] "2.0 - 85.3 (27.0)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
[1] "hr=" "1.5"
D184V2, continuous
D184V3, binary
                   cls
clus                 0  1
  SLITRK4 MUTATED   11  4
  SLITRK4 WILD-TYPE 82 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED     11    4
  SLITRK4 WILD-TYPE   82   75
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  FEMALE              11                82
  MALE                 4                75
D184V4, continuous
[1] "Remove cluster labels:" "SLITRK4 MUTATED"       
clus
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLITRK4 MUTATED                            0
  SLITRK4 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLITRK4 MUTATED                                   3
  SLITRK4 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLITRK4 MUTATED                                                   12
  SLITRK4 WILD-TYPE                                                102
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLITRK4 MUTATED                                            0
  SLITRK4 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLITRK4 MUTATED                                               0
  SLITRK4 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLITRK4 MUTATED                                0
  SLITRK4 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLITRK4 MUTATED                                    0
  SLITRK4 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLITRK4 MUTATED                              0                             0
  SLITRK4 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLITRK4 MUTATED                                               0
  SLITRK4 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  SLITRK4 MUTATED                                   0
  SLITRK4 WILD-TYPE                                 2
D184V5, multiclass
                   vv
clus                T1 T2 T3 T4
  SLITRK4 MUTATED    2 10  1  2
  SLITRK4 WILD-TYPE 39 98 13  6
D184V6, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  T1               2                39
  T2              10                98
  T3               1                13
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  SLITRK4 MUTATED    7  2     5
  SLITRK4 WILD-TYPE 88 35    30
D184V7, multiclass
       clus
vv      SLITRK4 MUTATED SLITRK4 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               5                30
                   vv
clus                 M0  M1  MX
  SLITRK4 MUTATED    14   0   1
  SLITRK4 WILD-TYPE 123   9  21
D184V8, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  M0              14               123
  M1               0                 9
  MX               1                21
                   vv
clus                 I II III IV
  SLITRK4 MUTATED    8  2   5  0
  SLITRK4 WILD-TYPE 80 31  34  9
D184V9, multiclass
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  I                 8                80
  II                2                31
  III               5                34
  IV                0                 9
D184V10, binary
                   cls
clus                  0   1
  SLITRK4 MUTATED     5  10
  SLITRK4 WILD-TYPE  11 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED      5   10
  SLITRK4 WILD-TYPE   11  146
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  NO                5                11
  YES              10               146
D184V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLITRK4 MUTATED                                             7
  SLITRK4 WILD-TYPE                                          55
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLITRK4 MUTATED                                        1              4
  SLITRK4 WILD-TYPE                                     45             24
                   vv
clus                LIFELONG NON-SMOKER
  SLITRK4 MUTATED                     0
  SLITRK4 WILD-TYPE                  24
D184V12, multiclass
                                             clus
vv                                            SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                24
D184V13, continuous
                   vv
clus                R0 R1 R2 RX
  SLITRK4 MUTATED    6  0  0  1
  SLITRK4 WILD-TYPE 96  5  4  9
D184V14, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  R0               6                96
  R1               0                 5
  R2               0                 4
  RX               1                 9
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V13 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V14 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
