getCNExpCorrelation1 reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/LUAD-TP/3140812/all_data_by_genes.txt |
getCNExpCorrelation1 mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/LUAD-TP/3140809/0.GDAC_mRNA_Preprocess_Median.Finished/LUAD-TP.medianexp.txt |
getCNExpCorrelation1 featurename | Hybridization.REF |
getCNExpCorrelation1 threshold | none |
getCNExpCorrelation1 method | pearson |
getCNExpCorrelation1 cortablename | LUAD-TP |
getCNExpCorrelation1 figurename | OUTPUT |
getCNExpCorrelation1 qatablename | STATS |
writeCorReport2 type | mRNA |
Execution Times: | |
Submitted: | 15:27:18 02-05-13 |
Completed: | |
Elapsed: | 00 hrs 04 mins 32 secs |
step 1. getCNExpCorrelation [id: 396890] Calculates the correlations between the copy number and expression data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00287:19
reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/LUAD-TP/3140812/all_data_by_genes.txt |
mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/LUAD-TP/3140809/0.GDAC_mRNA_Preprocess_Median.Finished/LUAD-TP.medianexp.txt |
featurename | Hybridization.REF |
threshold | none |
method | pearson |
cortablename | LUAD-TP |
figurename | OUTPUT |
qatablename | STATS |
Output Files: | |
LUAD-TP.CORS.tsv | |
STATS.QA.tsv | |
.lsf.out | |
OUTPUT.CORS.png | |
stdout.txt |
Execution Times: | |
Submitted: | 15:27:29 02-05-13 |
Completed: | 15:31:15 02-05-13 |
Elapsed: | 00 hrs 03 mins 46 secs |
step 2. writeCorReport [id: 396891] Generates the html report based on the correlation data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00288:42
pngname | OUTPUT.CORS.png |
tablename | LUAD-TP.CORS.tsv |
type | mRNA |
qatablename | STATS.QA.tsv |
Output Files: | |
nozzle.html | |
.lsf.out | |
nozzle.RData | |
stdout.txt |
Execution Times: | |
Submitted: | 15:27:29 02-05-13 |
Completed: | 15:31:49 02-05-13 |
Elapsed: | 00 hrs 04 mins 20 secs |