		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	0 (0%)	347	0.55259	1	0.38427	1	5.4121e-07	0.000365	0.0081638	1	0.16949	1	0.24291	1	4.9631e-06	0.00311	0.14855	1	0.18394	1	0.14747	1
Amp Peak  2(1p22.3)	0 (0%)	348	0.87647	1	1	1	4.7979e-07	0.000324	0.0025252	1	0.18268	1	0.39935	1	0.0016833	0.788	0.0091011	1	0.13646	1	0.13148	1
Amp Peak  3(1q21.3)	0 (0%)	136	0.36172	1	0.46484	1	5.6363e-06	0.00351	8.3208e-07	0.000556	0.45774	1	0.35692	1	4.426e-06	0.00279	0.47278	1	0.00069543	0.35	0.00021065	0.112
Amp Peak  4(3q26.2)	0 (0%)	315	0.00026431	0.139	0.0033217	1	5.0092e-10	3.85e-07	5.5192e-08	3.98e-05	0.00063119	0.32	0.0030724	1	1.6207e-09	1.23e-06	5.6153e-09	4.22e-06	1.458e-06	0.000956	2.2068e-07	0.000153
Amp Peak  5(4q12)	0 (0%)	384	0.70327	1	0.20593	1	6.061e-09	4.55e-06	0.031374	1	0.022089	1	0.026495	1	0.15498	1	0.025809	1	0.0024111	1	0.0042896	1
Amp Peak  6(5p15.33)	0 (0%)	168	0.87754	1	0.90125	1	2.7489e-21	2.24e-18	0.039672	1	0.056507	1	0.00079802	0.396	1.769e-07	0.000124	0.0016566	0.777	0.00022482	0.119	0.00030354	0.159
Amp Peak  7(5p13.1)	0 (0%)	192	0.26327	1	0.8973	1	5.6698e-18	4.58e-15	0.013505	1	0.44264	1	0.018662	1	0.00011946	0.0661	0.0034201	1	0.00012221	0.0671	0.00027402	0.144
Amp Peak  8(5q35.1)	0 (0%)	362	0.086231	1	0.45314	1	0.0039139	1	8.7965e-07	0.000585	0.090912	1	0.2003	1	4.725e-05	0.0272	0.00015887	0.0858	0.013436	1	0.0029379	1
Amp Peak  9(6p21.1)	0 (0%)	299	0.67463	1	0.20593	1	0.00016824	0.0903	1.0457e-07	7.46e-05	0.080965	1	0.60902	1	0.0091755	1	0.72669	1	0.011992	1	0.016843	1
Amp Peak 10(7p21.1)	0 (0%)	211	0.74305	1	1	1	6.9487e-20	5.65e-17	4.9289e-06	0.00309	0.0018446	0.858	0.0010365	0.508	7.6563e-09	5.73e-06	7.9824e-08	5.73e-05	8.3848e-06	0.00515	0.0020343	0.938
Amp Peak 11(7p11.2)	0 (0%)	220	1	1	1	1	1.2656e-18	1.02e-15	1.9966e-05	0.0118	0.0011393	0.554	0.00026343	0.139	1.0644e-08	7.91e-06	1.4854e-10	1.16e-07	2.5923e-07	0.000179	6.854e-05	0.0388
Amp Peak 12(7q31.2)	0 (0%)	272	0.48233	1	0.4288	1	2.8556e-09	2.16e-06	5.4754e-05	0.0313	0.2063	1	0.052026	1	2.9669e-06	0.0019	1.3685e-08	1.01e-05	0.0063711	1	0.0097813	1
Amp Peak 13(8p11.23)	0 (0%)	346	0.29434	1	0.10708	1	2.1702e-16	1.75e-13	8.2511e-06	0.00507	0.08441	1	0.026704	1	0.0030875	1	7.1648e-06	0.00443	0.013132	1	0.00047866	0.247
Amp Peak 14(8p11.21)	0 (0%)	310	0.25289	1	0.12373	1	3.4203e-21	2.78e-18	0.00012766	0.0697	0.014879	1	0.0053405	1	1.5923e-05	0.00949	4.9e-07	0.000331	4.1857e-05	0.0242	6.296e-06	0.0039
Amp Peak 15(8q11.1)	0 (0%)	258	0.0047198	1	0.013376	1	3.0403e-22	2.49e-19	1.1385e-07	8.08e-05	0.034394	1	0.0046706	1	5.3451e-06	0.00334	2.2621e-05	0.0133	1.942e-07	0.000136	8.8443e-07	0.000587
Amp Peak 16(8q24.21)	0 (0%)	174	0.034332	1	0.034084	1	8.4035e-20	6.82e-17	3.7208e-08	2.71e-05	0.15673	1	0.0016243	0.763	6.6465e-05	0.0378	3.27e-06	0.00209	8.4079e-07	0.00056	1.259e-05	0.00762
Amp Peak 17(10p15.1)	0 (0%)	348	0.023032	1	0.026244	1	4.1719e-06	0.00264	2.5854e-07	0.000179	0.0043432	1	0.034625	1	6.7817e-05	0.0385	2.0837e-08	1.54e-05	0.00023703	0.125	6.075e-05	0.0346
Amp Peak 18(11q13.3)	0 (0%)	315	0.0011838	0.573	0.00073647	0.368	5.9442e-14	4.76e-11	1.9354e-05	0.0115	0.012667	1	0.0068904	1	3.0732e-08	2.25e-05	9.4872e-07	0.000629	2.0794e-10	1.61e-07	2.032e-07	0.000141
Amp Peak 19(12p12.1)	0 (0%)	309	0.19753	1	0.032954	1	5.4536e-22	4.46e-19	4.137e-06	0.00262	0.034536	1	0.083445	1	1.4435e-05	0.00863	2.7391e-07	0.000188	6.0512e-06	0.00376	1.0145e-05	0.00621
Amp Peak 20(12q14.1)	0 (0%)	324	0.40563	1	0.30226	1	2.6454e-24	2.17e-21	1.4549e-07	0.000103	0.021505	1	0.0072217	1	2.9329e-07	0.000201	3.8782e-10	2.98e-07	6.2443e-09	4.68e-06	4.0876e-09	3.09e-06
Amp Peak 21(12q15)	0 (0%)	321	0.2214	1	0.10317	1	1.495e-21	1.22e-18	2.3526e-08	1.73e-05	0.014601	1	0.0047126	1	7.2425e-08	5.21e-05	4.3947e-09	3.31e-06	2.1686e-09	1.65e-06	1.1039e-07	7.86e-05
Amp Peak 22(13q33.3)	0 (0%)	400	0.17198	1	0.1048	1	0.43267	1	0.0028503	1	0.66321	1	0.29824	1	0.029299	1	0.22896	1	0.12856	1	0.082398	1
Amp Peak 23(14q13.3)	0 (0%)	261	0.56244	1	0.25359	1	2.034e-11	1.6e-08	4.728e-06	0.00297	0.0021261	0.972	0.012225	1	1.2809e-09	9.76e-07	3.8398e-05	0.0223	8.7005e-08	6.23e-05	2.6139e-09	1.98e-06
Amp Peak 24(17q12)	0 (0%)	264	0.17898	1	0.048967	1	6.0833e-14	4.87e-11	8.2659e-07	0.000553	0.063813	1	0.00015951	0.086	9.5604e-11	7.47e-08	2.0173e-06	0.0013	7.3338e-07	0.000491	1.0969e-06	0.000724
Amp Peak 25(17q23.1)	0 (0%)	242	0.081011	1	0.2078	1	2.2542e-14	1.81e-11	2.1073e-08	1.55e-05	0.001563	0.742	4.1217e-07	0.000279	2.7021e-13	2.15e-10	5.9854e-10	4.58e-07	1.5417e-06	0.00101	5.675e-06	0.00353
Amp Peak 26(18q11.2)	0 (0%)	378	0.195	1	0.015087	1	0.00091766	0.451	1.0692e-08	7.93e-06	0.043061	1	0.0008163	0.402	0.00079949	0.396	9.6053e-05	0.0538	1.0551e-05	0.00643	6.7326e-07	0.000452
Amp Peak 27(19q12)	0 (0%)	346	0.05139	1	0.021931	1	1.2875e-08	9.54e-06	0.00030411	0.159	0.068451	1	0.079108	1	0.00043758	0.226	4.2165e-08	3.06e-05	1.2652e-06	0.000834	1.4571e-06	0.000956
Amp Peak 28(20p11.21)	0 (0%)	293	0.061134	1	0.095316	1	1.1008e-05	0.00669	0.0070836	1	0.33779	1	0.037876	1	0.00022071	0.117	0.0015876	0.749	0.00014475	0.0785	7.5125e-05	0.0424
Amp Peak 29(20q13.33)	0 (0%)	247	0.005592	1	0.030109	1	1.0299e-07	7.35e-05	0.0029575	1	0.0042556	1	0.0033453	1	1.3661e-05	0.00821	0.018408	1	2.5339e-06	0.00163	4.2355e-07	0.000287
Amp Peak 30(22q11.22)	0 (0%)	391	0.26763	1	0.16206	1	0.0014007	0.671	0.60075	1	0.023163	1	0.11945	1	0.44027	1	0.053175	1	0.040192	1	0.1251	1
Amp Peak 31(Xq28)	0 (0%)	321	0.30129	1	0.12324	1	3.0132e-10	2.33e-07	5.9382e-05	0.0338	0.024391	1	0.030781	1	0.0014563	0.696	9.713e-05	0.0543	0.0058966	1	0.033047	1
Del Peak  1(1p36.13)	0 (0%)	364	0.79481	1	0.44137	1	1.5935e-06	0.00104	2.1754e-05	0.0129	0.43706	1	0.3635	1	8.0632e-06	0.00497	8.9874e-06	0.00551	0.025333	1	0.0048561	1
Del Peak  2(1p13.3)	0 (0%)	333	0.84359	1	0.89631	1	9.9668e-07	0.000659	9.8087e-05	0.0547	0.62591	1	0.7171	1	0.0070527	1	0.05738	1	0.069257	1	0.0063777	1
Del Peak  3(1p13.1)	0 (0%)	335	0.70327	1	0.70728	1	1.9336e-06	0.00125	2.1957e-05	0.013	0.12392	1	0.5348	1	0.0022115	1	0.034857	1	0.07021	1	0.013103	1
Del Peak  4(2q22.1)	0 (0%)	425	0.86935	1	0.77984	1	0.0023837	1	0.037851	1	0.030649	1	0.47148	1	0.15061	1	0.021298	1	0.073903	1	0.0079982	1
Del Peak  5(2q37.3)	0 (0%)	409	0.70327	1	0.20593	1	0.00033016	0.171	0.0016045	0.756	0.22002	1	0.15128	1	0.17776	1	0.0090463	1	0.0069076	1	0.00015287	0.0827
Del Peak  6(3p21.31)	0 (0%)	245	0.13236	1	0.47785	1	7.5324e-06	0.00465	3.2149e-06	0.00206	0.041069	1	0.0073749	1	3.353e-05	0.0195	6.2253e-09	4.67e-06	1.1778e-05	0.00715	0.00074304	0.371
Del Peak  7(3q11.1)	0 (0%)	339	0.60921	1	0.60234	1	0.04139	1	0.02737	1	0.36648	1	0.29817	1	0.047248	1	0.016203	1	0.18281	1	0.93624	1
Del Peak  8(3q29)	0 (0%)	343	0.71049	1	0.60234	1	0.14505	1	8.1101e-05	0.0457	0.0051543	1	0.016843	1	3.2717e-08	2.39e-05	0.017096	1	0.66647	1	0.68392	1
Del Peak  9(4p16.3)	0 (0%)	356	0.59513	1	0.45337	1	1.5601e-05	0.00931	2.3123e-05	0.0136	0.023211	1	0.049931	1	8.397e-07	0.00056	6.3637e-11	4.98e-08	2.8228e-07	0.000194	1.1051e-07	7.86e-05
Del Peak 10(4q22.1)	0 (0%)	330	0.00021406	0.114	9.8935e-05	0.0551	3.6672e-07	0.00025	9.8921e-08	7.07e-05	0.15053	1	0.028597	1	3.8108e-06	0.00242	9.9669e-14	7.96e-11	1.6594e-08	1.22e-05	1.5448e-06	0.00101
Del Peak 11(4q35.1)	0 (0%)	300	0.0020383	0.938	0.0011805	0.573	7.479e-10	5.71e-07	1.3625e-11	1.07e-08	0.038078	1	0.00019589	0.105	2.4668e-09	1.87e-06	7.3643e-18	5.94e-15	1.5731e-10	1.22e-07	1.0041e-10	7.83e-08
Del Peak 12(5q11.2)	0 (0%)	306	0.25999	1	0.25359	1	1.9005e-12	1.5e-09	2.0243e-07	0.000141	0.0042592	1	0.011309	1	1.3516e-06	0.000888	2.5683e-09	1.95e-06	4.5276e-08	3.28e-05	2.1069e-06	0.00136
Del Peak 13(5q22.1)	0 (0%)	283	0.044656	1	0.05154	1	1.0824e-12	8.57e-10	2.5624e-08	1.88e-05	0.0017014	0.795	0.0037686	1	1.5477e-08	1.14e-05	3.5591e-10	2.74e-07	5.9732e-10	4.58e-07	8.433e-09	6.29e-06
Del Peak 14(6q12)	0 (0%)	314	0.5324	1	1	1	0.059835	1	0.024441	1	0.24274	1	0.15879	1	0.57487	1	0.89101	1	0.053584	1	0.47634	1
Del Peak 15(6q22.31)	0 (0%)	238	0.54019	1	0.18678	1	0.022002	1	1.2902e-06	0.000849	0.30802	1	0.054436	1	0.018414	1	0.70899	1	0.9002	1	0.57065	1
Del Peak 16(6q26)	0 (0%)	234	0.36839	1	0.27624	1	0.011891	1	8.6432e-05	0.0486	0.16788	1	0.0094429	1	0.14055	1	0.80681	1	0.8101	1	0.40998	1
Del Peak 17(8p23.2)	0 (0%)	243	0.0052612	1	0.0038227	1	7.67e-17	6.18e-14	9.1653e-05	0.0514	0.017998	1	0.00035354	0.183	8.2151e-09	6.14e-06	2.2875e-07	0.000159	3.5805e-06	0.00228	0.0031177	1
Del Peak 18(8p12)	0 (0%)	267	0.10598	1	0.12046	1	1.826e-15	1.47e-12	1.9517e-05	0.0116	0.042395	1	0.022233	1	4.6121e-05	0.0267	5.3667e-06	0.00335	5.2594e-05	0.0301	0.0043223	1
Del Peak 19(8p11.21)	0 (0%)	365	0.79481	1	0.50418	1	2.7927e-11	2.2e-08	0.017983	1	0.72109	1	0.31842	1	0.00062651	0.318	0.18512	1	0.037601	1	0.51192	1
Del Peak 20(8q11.21)	0 (0%)	413	1	1	1	1	0.79583	1	0.062832	1	0.53688	1	0.67602	1	0.00083104	0.409	0.6036	1	0.15149	1	0.46448	1
Del Peak 21(9p23)	0 (0%)	214	0.52069	1	0.90125	1	3.2175e-07	0.000219	0.58236	1	0.61967	1	0.59796	1	0.015368	1	0.011883	1	0.63933	1	0.28646	1
Del Peak 22(9p21.3)	0 (0%)	208	0.52069	1	0.90125	1	1.7863e-06	0.00116	0.52113	1	0.328	1	0.28761	1	0.021992	1	0.0028449	1	0.93368	1	0.46383	1
Del Peak 23(9q21.11)	0 (0%)	241	0.033497	1	0.5971	1	1.491e-07	0.000105	5.0827e-05	0.0292	0.072606	1	0.011237	1	0.00011628	0.0644	1.6715e-07	0.000117	0.0033295	1	0.00012568	0.0689
Del Peak 24(10p15.3)	0 (0%)	359	1	1	1	1	0.00073507	0.368	0.00061385	0.313	0.5041	1	0.56009	1	0.00054591	0.28	0.36572	1	0.026642	1	0.010269	1
Del Peak 25(10q26.3)	0 (0%)	342	0.7482	1	0.28297	1	4.781e-06	0.003	0.00025572	0.135	0.002678	1	0.023698	1	5.6495e-05	0.0323	0.0020462	0.938	0.05324	1	0.0078915	1
Del Peak 26(11p15.5)	0 (0%)	346	0.26763	1	0.057583	1	4.0351e-06	0.00256	0.012035	1	0.0076669	1	0.0020423	0.938	0.0011065	0.54	4.3624e-06	0.00275	0.0045269	1	0.00010769	0.0598
Del Peak 27(11q23.2)	0 (0%)	363	0.43314	1	0.45337	1	0.00012159	0.0669	0.018434	1	0.0090008	1	0.0026588	1	0.0015619	0.742	0.0017231	0.803	0.0029556	1	0.0054454	1
Del Peak 28(11q25)	0 (0%)	367	0.1081	1	0.07995	1	0.0014903	0.711	0.045403	1	0.0012028	0.581	0.0064444	1	0.026387	1	0.0051693	1	0.14084	1	0.085396	1
Del Peak 29(12p13.2)	0 (0%)	346	0.25541	1	0.71867	1	0.00017186	0.0921	7.2125e-07	0.000484	0.077418	1	0.020954	1	0.0080213	1	0.1112	1	0.82418	1	1	1
Del Peak 30(12q12)	0 (0%)	382	0.59734	1	0.64431	1	1.1922e-05	0.00722	0.020959	1	0.1068	1	0.015755	1	0.0041488	1	0.047369	1	0.20392	1	0.052019	1
Del Peak 31(12q24.33)	0 (0%)	357	0.06298	1	0.039644	1	6.5364e-06	0.00405	0.0019493	0.901	0.022299	1	0.0032834	1	0.0006144	0.313	0.0003057	0.159	0.053816	1	0.015133	1
Del Peak 32(13q12.11)	0 (0%)	207	0.0011346	0.553	0.013376	1	1.378e-19	1.12e-16	0.00060839	0.311	0.0018816	0.873	1.4854e-06	0.000971	2.7306e-07	0.000188	4.0695e-08	2.95e-05	0.0024834	1	8.5063e-05	0.0479
Del Peak 33(13q12.13)	0 (0%)	206	0.0086219	1	0.021834	1	1.0462e-19	8.48e-17	0.00010727	0.0596	0.00052444	0.27	6.6845e-07	0.00045	1.2029e-07	8.53e-05	8.1745e-08	5.86e-05	0.0038594	1	0.00013791	0.0749
Del Peak 34(13q14.2)	0 (0%)	216	0.0086219	1	0.021834	1	7.6139e-22	6.22e-19	0.00078257	0.39	0.0006466	0.327	1.0418e-05	0.00636	4.1467e-09	3.13e-06	1.5408e-07	0.000109	0.00020565	0.11	4.6856e-05	0.027
Del Peak 35(13q34)	0 (0%)	255	0.03556	1	0.044535	1	2.2047e-15	1.77e-12	0.050765	1	0.0035915	1	0.0007897	0.392	3.7064e-06	0.00236	3.094e-05	0.018	0.021489	1	0.0046232	1
Del Peak 36(14q32.33)	0 (0%)	332	0.70327	1	0.30226	1	0.00013486	0.0734	0.52145	1	0.16025	1	0.062692	1	0.13133	1	0.045057	1	0.090929	1	0.011739	1
Del Peak 37(15q11.2)	0 (0%)	233	0.1678	1	0.15747	1	1.8115e-10	1.41e-07	0.00019302	0.103	0.09283	1	0.00016097	0.0866	1.9138e-13	1.53e-10	1.4023e-05	0.00841	2.8215e-05	0.0165	0.0008025	0.396
Del Peak 38(16q23.1)	0 (0%)	312	0.058714	1	0.31155	1	2.5866e-07	0.000179	0.00045989	0.237	0.00069818	0.35	0.017432	1	1.7313e-06	0.00112	3.2112e-07	0.000219	0.013008	1	0.055891	1
Del Peak 39(16q24.3)	0 (0%)	294	0.16033	1	0.63133	1	1.6596e-06	0.00108	0.0028187	1	0.018589	1	0.079995	1	2.903e-05	0.0169	4.8778e-05	0.028	0.02155	1	0.034487	1
Del Peak 40(17p13.3)	0 (0%)	220	0.38561	1	0.6094	1	2.7784e-13	2.21e-10	7.5644e-08	5.44e-05	0.033388	1	0.0015801	0.747	5.6037e-08	4.04e-05	9.7865e-07	0.000648	0.010242	1	0.0060283	1
Del Peak 41(18q21.32)	0 (0%)	239	0.11499	1	0.22677	1	8.5809e-10	6.55e-07	0.050772	1	0.001327	0.638	0.0022974	1	9.0795e-09	6.76e-06	0.00011996	0.0662	0.0092521	1	0.10487	1
Del Peak 42(18q23)	0 (0%)	244	0.029007	1	0.096811	1	9.3067e-13	7.39e-10	0.020478	1	0.0039452	1	0.0013536	0.65	1.0408e-08	7.74e-06	1.2826e-05	0.00773	0.003884	1	0.079792	1
Del Peak 43(19p13.3)	0 (0%)	220	0.57194	1	0.66451	1	2.5955e-12	2.05e-09	2.3524e-07	0.000163	0.56376	1	0.30589	1	3.4289e-10	2.64e-07	3.1444e-07	0.000215	3.6499e-06	0.00232	1.6314e-07	0.000115
Del Peak 44(19p13.2)	0 (0%)	226	0.69366	1	1	1	1.2528e-11	9.88e-09	2.2226e-08	1.63e-05	0.37799	1	0.18657	1	3.3382e-10	2.58e-07	4.0099e-07	0.000272	2.4594e-06	0.00158	2.8685e-07	0.000197
Del Peak 45(19p12)	0 (0%)	273	0.51884	1	0.65766	1	9.722e-13	7.71e-10	1.7072e-05	0.0102	0.60272	1	0.26611	1	0.0015256	0.726	0.0001202	0.0662	2.7949e-05	0.0164	1.2668e-05	0.00765
Del Peak 46(19q13.33)	0 (0%)	298	0.27231	1	0.38339	1	2.0218e-07	0.000141	0.0029212	1	0.08193	1	0.20781	1	0.018353	1	0.001943	0.9	2.5156e-05	0.0147	1.4098e-05	0.00844
Del Peak 47(20p13)	0 (0%)	351	0.10512	1	0.26812	1	2.3992e-06	0.00155	0.0006553	0.33	0.0055231	1	0.0010629	0.52	0.00012668	0.0693	0.011696	1	0.74194	1	0.7718	1
Del Peak 48(21q11.2)	0 (0%)	315	0.060411	1	0.050147	1	3.1031e-11	2.44e-08	0.00013079	0.0713	0.0062417	1	0.0046886	1	3.5874e-08	2.61e-05	3.7791e-07	0.000257	2.2467e-05	0.0132	3.5511e-08	2.59e-05
Del Peak 49(21q21.3)	0 (0%)	319	0.028769	1	0.032954	1	9.4524e-11	7.39e-08	1.2844e-05	0.00773	0.00052511	0.27	0.00065044	0.328	3.2407e-10	2.51e-07	5.5087e-10	4.23e-07	1.0353e-05	0.00633	1.2802e-07	9.06e-05
Del Peak 50(22q13.32)	0 (0%)	248	0.069155	1	0.087079	1	6.175e-13	4.91e-10	4.5678e-08	3.3e-05	0.0086263	1	0.017135	1	1.5054e-10	1.17e-07	6.2863e-11	4.93e-08	1.6607e-07	0.000117	2.7183e-08	1.99e-05
Del Peak 51(Xp22.2)	0 (0%)	335	0.69055	1	0.89631	1	1.9902e-07	0.000139	0.0013094	0.631	0.08854	1	0.028366	1	0.014054	1	0.00032178	0.167	0.49942	1	0.24355	1
