
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397796/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUAD-TP/3145444/1.GDAC_mergedClustering.Finished/LUAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=477, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 190 to 184."
[1] 184 172
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "NAV3 MUTATION ANALYSIS"
[1] 3
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             34             138 
  CDH10 MUTATED CDH10 WILD-TYPE 
             34             138 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
[1] "ZNF676 MUTATION ANALYSIS"
[1] 3
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
[1] "OR2T4 MUTATION ANALYSIS"
[1] 3
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
[1] "GABRB3 MUTATION ANALYSIS"
[1] 3
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
[1] "OR4A5 MUTATION ANALYSIS"
[1] 3
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "OR2L8 MUTATION ANALYSIS"
[1] 3
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
[1] "ZNF804A MUTATION ANALYSIS"
[1] 3
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
[1] "C18ORF34 MUTATION ANALYSIS"
[1] 3
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
[1] "OR2T34 MUTATION ANALYSIS"
[1] 3
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
[1] "ZNF492 MUTATION ANALYSIS"
[1] 3
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
[1] "OR4C15 MUTATION ANALYSIS"
[1] 3
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
[1] "TBX22 MUTATION ANALYSIS"
[1] 3
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "LRRTM4 MUTATION ANALYSIS"
[1] 3
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "OR5D14 MUTATION ANALYSIS"
[1] 3
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
[1] "OR8H2 MUTATION ANALYSIS"
[1] 3
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
[1] "NRG3 MUTATION ANALYSIS"
[1] 3
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
[1] "HEATR7B2 MUTATION ANALYSIS"
[1] 3
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
[1] "HGF MUTATION ANALYSIS"
[1] 3
  HGF MUTATED HGF WILD-TYPE 
           16           156 
  HGF MUTATED HGF WILD-TYPE 
           16           156 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "WDR49 MUTATION ANALYSIS"
[1] 3
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
[1] "CXORF59 MUTATION ANALYSIS"
[1] 3
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
[1] "ZIC4 MUTATION ANALYSIS"
[1] 3
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
[1] "OR52E4 MUTATION ANALYSIS"
[1] 3
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
[1] "LRRIQ1 MUTATION ANALYSIS"
[1] 3
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
[1] "FAM71B MUTATION ANALYSIS"
[1] 3
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
[1] "EPHB1 MUTATION ANALYSIS"
[1] 3
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
[1] "RPL10L MUTATION ANALYSIS"
[1] 3
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
[1] "OR4S2 MUTATION ANALYSIS"
[1] 3
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
[1] "OR14I1 MUTATION ANALYSIS"
[1] 3
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "MAGEB18 MUTATION ANALYSIS"
[1] 3
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "SYT4 MUTATION ANALYSIS"
[1] 3
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
[1] "ZSWIM2 MUTATION ANALYSIS"
[1] 3
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "KRTAP15-1 MUTATION ANALYSIS"
[1] 3
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
[1] "NTNG1 MUTATION ANALYSIS"
[1] 3
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
[1] "SATB2 MUTATION ANALYSIS"
[1] 3
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
[1] "OR5F1 MUTATION ANALYSIS"
[1] 3
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
[1] "OR2W5 MUTATION ANALYSIS"
[1] 3
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
[1] "CMKLR1 MUTATION ANALYSIS"
[1] 3
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "DACH1 MUTATION ANALYSIS"
[1] 3
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
[1] "ARHGAP36 MUTATION ANALYSIS"
[1] 3
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
[1] "FABP12 MUTATION ANALYSIS"
[1] 3
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
[1] "C7 MUTATION ANALYSIS"
[1] 3
  C7 MUTATED C7 WILD-TYPE 
          14          158 
  C7 MUTATED C7 WILD-TYPE 
          14          158 
[1] "PI15 MUTATION ANALYSIS"
[1] 3
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
[1] "OR5D16 MUTATION ANALYSIS"
[1] 3
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
[1] "LIPI MUTATION ANALYSIS"
[1] 3
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
[1] "SEMA3A MUTATION ANALYSIS"
[1] 3
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "SLC35F1 MUTATION ANALYSIS"
[1] 3
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
[1] "ANKRD7 MUTATION ANALYSIS"
[1] 3
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
[1] "KRTAP11-1 MUTATION ANALYSIS"
[1] 3
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
[1] "OR6N2 MUTATION ANALYSIS"
[1] 3
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
[1] "C14ORF177 MUTATION ANALYSIS"
[1] 3
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "KCNS2 MUTATION ANALYSIS"
[1] 3
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
[1] "EPHA7 MUTATION ANALYSIS"
[1] 3
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             22             150 
  CDH18 MUTATED CDH18 WILD-TYPE 
             22             150 
[1] "CTNNA2 MUTATION ANALYSIS"
[1] 3
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
[1] "OR5T2 MUTATION ANALYSIS"
[1] 3
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
[1] "APCS MUTATION ANALYSIS"
[1] 3
  APCS MUTATED APCS WILD-TYPE 
             4            168 
  APCS MUTATED APCS WILD-TYPE 
             4            168 
[1] "IFNA7 MUTATION ANALYSIS"
[1] 3
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
[1] "UGT2B10 MUTATION ANALYSIS"
[1] 3
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
[1] "TBX5 MUTATION ANALYSIS"
[1] 3
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
[1] "VN1R2 MUTATION ANALYSIS"
[1] 3
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
[1] "ADAMTS18 MUTATION ANALYSIS"
[1] 3
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
[1] "OR51I1 MUTATION ANALYSIS"
[1] 3
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
[1] "GPR101 MUTATION ANALYSIS"
[1] 3
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
[1] "IRX1 MUTATION ANALYSIS"
[1] 3
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
[1] "OR10T2 MUTATION ANALYSIS"
[1] 3
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
[1] "OR4L1 MUTATION ANALYSIS"
[1] 3
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
[1] "RIT2 MUTATION ANALYSIS"
[1] 3
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
[1] "NPFFR2 MUTATION ANALYSIS"
[1] 3
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
[1] "CHM MUTATION ANALYSIS"
[1] 3
  CHM MUTATED CHM WILD-TYPE 
            6           166 
  CHM MUTATED CHM WILD-TYPE 
            6           166 
[1] "OR4D10 MUTATION ANALYSIS"
[1] 3
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
[1] "FOXI1 MUTATION ANALYSIS"
[1] 3
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
[1] "FAM47B MUTATION ANALYSIS"
[1] 3
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
[1] "OR5K3 MUTATION ANALYSIS"
[1] 3
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
[1] "HOXB3 MUTATION ANALYSIS"
[1] 3
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
[1] "PTN MUTATION ANALYSIS"
[1] 3
  PTN MUTATED PTN WILD-TYPE 
            4           168 
  PTN MUTATED PTN WILD-TYPE 
            4           168 
[1] "SAMD7 MUTATION ANALYSIS"
[1] 3
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
[1] "BIRC8 MUTATION ANALYSIS"
[1] 3
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
[1] "OR51A7 MUTATION ANALYSIS"
[1] 3
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
[1] "TYR MUTATION ANALYSIS"
[1] 3
  TYR MUTATED TYR WILD-TYPE 
           10           162 
  TYR MUTATED TYR WILD-TYPE 
           10           162 
[1] "TGFB2 MUTATION ANALYSIS"
[1] 3
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "CYLC1 MUTATION ANALYSIS"
[1] 3
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "FGF14 MUTATION ANALYSIS"
[1] 3
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
[1] "GC MUTATION ANALYSIS"
[1] 3
  GC MUTATED GC WILD-TYPE 
           5          167 
  GC MUTATED GC WILD-TYPE 
           5          167 
[1] "LCE1F MUTATION ANALYSIS"
[1] 3
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
[1] "RBM19 MUTATION ANALYSIS"
[1] 3
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
[1] "C2ORF51 MUTATION ANALYSIS"
[1] 3
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               8              164 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               8              164 
[1] "DIO2 MUTATION ANALYSIS"
[1] 3
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
[1] "FRG1 MUTATION ANALYSIS"
[1] 3
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
[1] "PIP MUTATION ANALYSIS"
[1] 3
  PIP MUTATED PIP WILD-TYPE 
            5           167 
  PIP MUTATED PIP WILD-TYPE 
            5           167 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
[1] "OR4A16 MUTATION ANALYSIS"
[1] 3
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "SLC10A2 MUTATION ANALYSIS"
[1] 3
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "SLITRK4 MUTATION ANALYSIS"
[1] 3
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 172 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 172 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=9, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, multiclass
[1] "Remove cluster labels:" "CDKN2A MUTATED"        
clus
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
D1V2, multiclass
[1] "Remove cluster labels:" "CDKN2A MUTATED"        
clus
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
D1V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              1               19
D1V4, multiclass
D1V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               63
  CLUS_2              1               23
  CLUS_3              4               42
D1V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               63
  CLUS_3              3               32
  CLUS_4              1               23
D1V7, multiclass
D1V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               59
  CLUS_2              4               53
  CLUS_3              2               50
D1V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               54
  CLUS_2              4               68
  CLUS_3              1               38
D1V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               51
  CLUS_2              3               88
  CLUS_3              1               21

Clustering(2) Variable = EGFR MUTATION ANALYSIS
D2V1, multiclass
[1] "Remove cluster labels:" "EGFR MUTATED"          
clus
  EGFR MUTATED EGFR WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" 
D2V2, multiclass
[1] "Remove cluster labels:" "EGFR MUTATED"          
clus
  EGFR MUTATED EGFR WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" 
D2V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           12             41
  CLUS_2            7             56
  CLUS_3            2             34
  CLUS_4            1             19
D2V4, multiclass
D2V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           12             53
  CLUS_2            1             23
  CLUS_3            4             42
D2V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            2              9
  CLUS_2           11             54
  CLUS_3            2             33
  CLUS_4            2             22
D2V7, multiclass
D2V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           11             50
  CLUS_2            9             48
  CLUS_3            2             50
D2V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            6             51
  CLUS_2            9             63
  CLUS_3            7             32
D2V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             50
  CLUS_2           11             80
  CLUS_3            6             16

Clustering(3) Variable = KRAS MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              3
  CLUS_2            3              6
  CLUS_3            3              9
  CLUS_4            1              5
D3V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              5
  CLUS_2            3             10
  CLUS_3            4              8
D3V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            8             45
  CLUS_2           18             45
  CLUS_3           14             22
  CLUS_4            7             13
D3V4, multiclass
D3V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           14             51
  CLUS_2           10             14
  CLUS_3            9             37
D3V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            5              6
  CLUS_2           11             54
  CLUS_3            7             28
  CLUS_4           10             14
D3V7, multiclass
D3V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           19             42
  CLUS_2           14             43
  CLUS_3           13             39
D3V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           23             34
  CLUS_2           13             59
  CLUS_3            9             30
D3V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           22             33
  CLUS_2           19             72
  CLUS_3            4             18

Clustering(4) Variable = STK11 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0               9
  CLUS_3             2              10
  CLUS_4             1               5
D4V2, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             0              12
D4V3, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0              53
  CLUS_2            11              52
  CLUS_3             9              27
  CLUS_4             0              20
D4V4, multiclass
D4V5, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             5              19
  CLUS_3             5              41
D4V6, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             3              62
  CLUS_3             4              31
  CLUS_4             5              19
D4V7, multiclass
D4V8, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             8              53
  CLUS_2             0              57
  CLUS_3            11              41
D4V9, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             7              50
  CLUS_2             6              66
  CLUS_3             5              34
D4V10, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             8              47
  CLUS_2            10              81
  CLUS_3             0              22

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            1              4
  CLUS_2            6              3
  CLUS_3            3              9
  CLUS_4            6              0
D5V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6              1
  CLUS_2            4              9
  CLUS_3            6              6
D5V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           36             17
  CLUS_2           18             45
  CLUS_3           23             13
  CLUS_4           10             10
D5V4, multiclass
D5V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           35             30
  CLUS_2            4             20
  CLUS_3           31             15
D5V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4              7
  CLUS_2           36             29
  CLUS_3           24             11
  CLUS_4            6             18
D5V7, multiclass
D5V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             45
  CLUS_2           40             17
  CLUS_3           30             22
D5V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           20             37
  CLUS_2           45             27
  CLUS_3           20             19
D5V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             31
  CLUS_2           52             39
  CLUS_3            9             13

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0               9
  CLUS_3             3               9
  CLUS_4             1               5
D6V2, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             3              10
  CLUS_3             0              12
D6V3, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2            14              49
  CLUS_3            10              26
  CLUS_4             6              14
D6V4, multiclass
D6V5, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             8              57
  CLUS_2             6              18
  CLUS_3            11              35
D6V6, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             6              59
  CLUS_3            11              24
  CLUS_4             7              17
D6V7, multiclass
D6V8, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             9              52
  CLUS_2             3              54
  CLUS_3            20              32
D6V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            11              46
  CLUS_2            12              60
  CLUS_3             6              33
D6V10, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            10              45
  CLUS_2            18              73
  CLUS_3             1              21

Clustering(7) Variable = NAV3 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            2              4
D7V2, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            1             12
  CLUS_3            3              9
D7V3, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            8             45
  CLUS_2           11             52
  CLUS_3            9             27
  CLUS_4            7             13
D7V4, multiclass
D7V5, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1           14             51
  CLUS_2            3             21
  CLUS_3            7             39
D7V6, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            1             10
  CLUS_2           11             54
  CLUS_3            8             27
  CLUS_4            4             20
D7V7, multiclass
D7V8, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            8             53
  CLUS_2           13             44
  CLUS_3           14             38
D7V9, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            9             48
  CLUS_2           20             52
  CLUS_3            4             35
D7V10, multiclass
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  CLUS_1            8             47
  CLUS_2           23             68
  CLUS_3            2             20

Clustering(8) Variable = MAGEC1 MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              1                8
  CLUS_3              1               11
  CLUS_4              1                5
D8V2, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               11
  CLUS_3              0               12
D8V3, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1             10               43
  CLUS_2              7               56
  CLUS_3              4               32
  CLUS_4              2               18
D8V4, multiclass
D8V5, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              9               56
  CLUS_2              3               21
  CLUS_3              5               41
D8V6, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              9               56
  CLUS_3              3               32
  CLUS_4              4               20
D8V7, multiclass
D8V8, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              8               53
  CLUS_2             11               46
  CLUS_3              4               48
D8V9, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              9               48
  CLUS_2             10               62
  CLUS_3              4               35
D8V10, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              8               47
  CLUS_2             14               77
  CLUS_3              1               21

Clustering(9) Variable = CDH10 MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             3               9
  CLUS_4             1               5
D9V2, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             3              10
  CLUS_3             3               9
D9V3, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             7              46
  CLUS_2            15              48
  CLUS_3             5              31
  CLUS_4             7              13
D9V4, multiclass
D9V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            16              49
  CLUS_2             4              20
  CLUS_3             9              37
D9V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4               7
  CLUS_2            12              53
  CLUS_3             9              26
  CLUS_4             4              20
D9V7, multiclass
D9V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            11              50
  CLUS_2            10              47
  CLUS_3            13              39
D9V9, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            11              46
  CLUS_2            15              57
  CLUS_3             8              31
D9V10, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            10              45
  CLUS_2            20              71
  CLUS_3             4              18

Clustering(10) Variable = MUC7 MUTATION ANALYSIS
D10V1, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D10V2, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D10V3, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            2             61
  CLUS_3            4             32
  CLUS_4            7             13
D10V4, multiclass
D10V5, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            4             61
  CLUS_2            1             23
  CLUS_3            7             39
D10V6, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            5             60
  CLUS_3            6             29
  CLUS_4            1             23
D10V7, multiclass
D10V8, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            2             55
  CLUS_3           12             40
D10V9, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            9             63
  CLUS_3            4             35
D10V10, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            3             52
  CLUS_2           12             79
  CLUS_3            0             22

Clustering(11) Variable = TMTC1 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             1               5
D11V2, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              13
  CLUS_3             2              10
D11V3, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             6              47
  CLUS_2             6              57
  CLUS_3             6              30
  CLUS_4             4              16
D11V4, multiclass
D11V5, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1            10              55
  CLUS_2             1              23
  CLUS_3             6              40
D11V6, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             9              56
  CLUS_3             6              29
  CLUS_4             2              22
D11V7, multiclass
D11V8, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             6              55
  CLUS_2             8              49
  CLUS_3             8              44
D11V9, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             6              51
  CLUS_2            10              62
  CLUS_3             4              35
D11V10, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             5              50
  CLUS_2            14              77
  CLUS_3             1              21

Clustering(12) Variable = OR4C16 MUTATION ANALYSIS
D12V1, multiclass
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-55-1592       TCGA-55-1594 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D12V2, multiclass
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-55-1592       TCGA-55-1594 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D12V3, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              6               47
  CLUS_2              5               58
  CLUS_3              2               34
  CLUS_4              1               19
D12V4, multiclass
D12V5, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              0               24
  CLUS_3              7               39
D12V6, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              7               28
  CLUS_4              1               23
D12V7, multiclass
D12V8, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              6               51
  CLUS_3              6               46
D12V9, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              8               64
  CLUS_3              3               36
D12V10, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              4               51
  CLUS_2              9               82
  CLUS_3              1               21

Clustering(13) Variable = ZNF676 MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              2                3
  CLUS_2              0                9
  CLUS_3              0               12
  CLUS_4              1                5
D13V2, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0               13
  CLUS_3              1               11
D13V3, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              5               48
  CLUS_2              3               60
  CLUS_3              6               30
  CLUS_4              2               18
D13V4, multiclass
D13V5, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              4               61
  CLUS_2              1               23
  CLUS_3              6               40
D13V6, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              6               29
  CLUS_4              2               22
D13V7, multiclass
D13V8, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              5               52
  CLUS_3              9               43
D13V9, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              8               64
  CLUS_3              5               34
D13V10, multiclass
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  CLUS_1              3               52
  CLUS_2             11               80
  CLUS_3              1               21

Clustering(14) Variable = EPHA6 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             1               5
D14V2, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             2              11
  CLUS_3             1              11
D14V3, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             6              57
  CLUS_3             7              29
  CLUS_4             4              16
D14V4, multiclass
D14V5, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             1              23
  CLUS_3             8              38
D14V6, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              62
  CLUS_3             7              28
  CLUS_4             3              21
D14V7, multiclass
D14V8, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             6              55
  CLUS_2             8              49
  CLUS_3             8              44
D14V9, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             4              53
  CLUS_2            14              58
  CLUS_3             3              36
D14V10, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             4              51
  CLUS_2            17              74
  CLUS_3             0              22

Clustering(15) Variable = RIMS2 MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             3               3
D15V2, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             2              11
  CLUS_3             1              11
D15V3, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             7              46
  CLUS_2             9              54
  CLUS_3            11              25
  CLUS_4             5              15
D15V4, multiclass
D15V5, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             8              57
  CLUS_2             6              18
  CLUS_3             9              37
D15V6, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2            12              53
  CLUS_3             6              29
  CLUS_4             5              19
D15V7, multiclass
D15V8, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             7              54
  CLUS_2            14              43
  CLUS_3            11              41
D15V9, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             6              51
  CLUS_2            17              55
  CLUS_3             8              31
D15V10, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             7              48
  CLUS_2            21              70
  CLUS_3             3              19

Clustering(16) Variable = OR2L3 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             0              12
  CLUS_4             1               5
D16V2, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             2              10
D16V3, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             2              61
  CLUS_3             6              30
  CLUS_4             2              18
D16V4, multiclass
D16V5, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             8              57
  CLUS_2             0              24
  CLUS_3             3              43
D16V6, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             6              59
  CLUS_3             3              32
  CLUS_4             1              23
D16V7, multiclass
D16V8, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             5              52
  CLUS_3             7              45
D16V9, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             7              65
  CLUS_3             3              36
D16V10, multiclass
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  CLUS_1             3              52
  CLUS_2            10              81
  CLUS_3             0              22

Clustering(17) Variable = ELTD1 MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             1               5
D17V2, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             1              11
D17V3, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             4              59
  CLUS_3             6              30
  CLUS_4             1              19
D17V4, multiclass
D17V5, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             7              58
  CLUS_2             0              24
  CLUS_3             7              39
D17V6, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             6              59
  CLUS_3             6              29
  CLUS_4             2              22
D17V7, multiclass
D17V8, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2            10              47
  CLUS_3             4              48
D17V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             8              64
  CLUS_3             4              35
D17V10, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2            12              79
  CLUS_3             0              22

Clustering(18) Variable = CD5L MUTATION ANALYSIS
D18V1, multiclass
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D18V2, multiclass
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D18V3, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            6             47
  CLUS_2            3             60
  CLUS_3            3             33
  CLUS_4            0             20
D18V4, multiclass
D18V5, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            8             57
  CLUS_2            0             24
  CLUS_3            3             43
D18V6, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            1             10
  CLUS_2            7             58
  CLUS_3            2             33
  CLUS_4            1             23
D18V7, multiclass
D18V8, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             59
  CLUS_2            6             51
  CLUS_3            4             48
D18V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             53
  CLUS_2            6             66
  CLUS_3            2             37
D18V10, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             51
  CLUS_2            7             84
  CLUS_3            1             21

Clustering(19) Variable = CNBD1 MUTATION ANALYSIS
D19V1, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D19V2, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D19V3, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             2              61
  CLUS_3             3              33
  CLUS_4             2              18
D19V4, multiclass
D19V5, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             3              62
  CLUS_2             0              24
  CLUS_3             5              41
D19V6, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             6              29
  CLUS_4             0              24
D19V7, multiclass
D19V8, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             4              53
  CLUS_3             6              46
D19V9, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             8              64
  CLUS_3             2              37
D19V10, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             9              82
  CLUS_3             0              22

Clustering(20) Variable = REG1B MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             2              10
  CLUS_4             1               5
D20V2, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             2              10
D20V3, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              59
  CLUS_3             4              32
  CLUS_4             2              18
D20V4, multiclass
D20V5, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             6              59
  CLUS_2             3              21
  CLUS_3             3              43
D20V6, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             0              11
  CLUS_2             6              59
  CLUS_3             2              33
  CLUS_4             4              20
D20V7, multiclass
D20V8, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             5              56
  CLUS_2             5              52
  CLUS_3             3              49
D20V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             6              51
  CLUS_2             4              68
  CLUS_3             2              37
D20V10, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             5              50
  CLUS_2             6              85
  CLUS_3             1              21

Clustering(21) Variable = REG3A MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             0               6
D21V2, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             1              11
D21V3, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             7              46
  CLUS_2             4              59
  CLUS_3             1              35
  CLUS_4             2              18
D21V4, multiclass
D21V5, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             8              57
  CLUS_2             1              23
  CLUS_3             2              44
D21V6, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             0              11
  CLUS_2             8              57
  CLUS_3             2              33
  CLUS_4             1              23
D21V7, multiclass
D21V8, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             2              59
  CLUS_2             7              50
  CLUS_3             5              47
D21V9, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             3              54
  CLUS_2             8              64
  CLUS_3             3              36
D21V10, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  CLUS_1             4              51
  CLUS_2             9              82
  CLUS_3             1              21

Clustering(22) Variable = OR2T4 MUTATION ANALYSIS
D22V1, multiclass
[1] "Remove cluster labels:" "OR2T4 MUTATED"         
clus
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
D22V2, multiclass
[1] "Remove cluster labels:" "OR2T4 MUTATED"         
clus
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
D22V3, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             3              60
  CLUS_3             4              32
  CLUS_4             2              18
D22V4, multiclass
D22V5, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             1              23
  CLUS_3             5              41
D22V6, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             5              30
  CLUS_4             2              22
D22V7, multiclass
D22V8, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             5              52
  CLUS_3             5              47
D22V9, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             4              53
  CLUS_2             8              64
  CLUS_3             1              38
D22V10, multiclass
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             9              82
  CLUS_3             0              22

Clustering(23) Variable = GABRB3 MUTATION ANALYSIS
D23V1, multiclass
[1] "Remove cluster labels:" "GABRB3 MUTATED"        
clus
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
D23V2, multiclass
[1] "Remove cluster labels:" "GABRB3 MUTATED"        
clus
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
D23V3, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              4               59
  CLUS_3              4               32
  CLUS_4              1               19
D23V4, multiclass
D23V5, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              1               23
  CLUS_3              3               43
D23V6, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               63
  CLUS_3              2               33
  CLUS_4              2               22
D23V7, multiclass
D23V8, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              3               54
  CLUS_3              5               47
D23V9, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              7               65
  CLUS_3              1               38
D23V10, multiclass
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  CLUS_1              0               55
  CLUS_2              9               82
  CLUS_3              0               22

Clustering(24) Variable = TRIM58 MUTATION ANALYSIS
D24V1, multiclass
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2656       TCGA-44-2657 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
D24V2, multiclass
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2656       TCGA-44-2657 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
D24V3, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              4               59
  CLUS_3              2               34
  CLUS_4              1               19
D24V4, multiclass
D24V5, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              0               24
  CLUS_3              3               43
D24V6, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              2               33
  CLUS_4              1               23
D24V7, multiclass
D24V8, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              3               54
  CLUS_3              2               50
D24V9, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              4               53
  CLUS_2              3               69
  CLUS_3              1               38
D24V10, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              4               87
  CLUS_3              1               21

Clustering(25) Variable = BAGE2 MUTATION ANALYSIS
D25V1, multiclass
D25V2, multiclass
D25V3, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             2              34
  CLUS_4             1              19
D25V4, multiclass
D25V5, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             6              40
D25V6, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             4              31
  CLUS_4             0              24
D25V7, multiclass
D25V8, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             1              56
  CLUS_3             7              45
D25V9, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             5              67
  CLUS_3             3              36
D25V10, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             6              85
  CLUS_3             2              20

Clustering(26) Variable = OR4A5 MUTATION ANALYSIS
D26V1, multiclass
[1] "Remove cluster labels:" "OR4A5 MUTATED"         
clus
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
D26V2, multiclass
[1] "Remove cluster labels:" "OR4A5 MUTATED"         
clus
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
D26V3, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              59
  CLUS_3             3              33
  CLUS_4             2              18
D26V4, multiclass
D26V5, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             4              20
  CLUS_3             4              42
D26V6, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              64
  CLUS_3             6              29
  CLUS_4             3              21
D26V7, multiclass
D26V8, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             4              53
  CLUS_3             4              48
D26V9, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             7              65
  CLUS_3             2              37
D26V10, multiclass
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             9              82
  CLUS_3             0              22

Clustering(27) Variable = BRAF MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            0              6
D27V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             12
  CLUS_3            3              9
D27V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            6             47
  CLUS_2            5             58
  CLUS_3            1             35
  CLUS_4            3             17
D27V4, multiclass
D27V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             61
  CLUS_2            2             22
  CLUS_3            3             43
D27V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             10
  CLUS_2            6             59
  CLUS_3            2             33
  CLUS_4            0             24
D27V7, multiclass
D27V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             57
  CLUS_2            8             49
  CLUS_3            3             49
D27V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             52
  CLUS_2            5             67
  CLUS_3            5             34
D27V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             50
  CLUS_2            6             85
  CLUS_3            4             18

Clustering(28) Variable = OR2L8 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             3               6
  CLUS_3             0              12
  CLUS_4             1               5
D28V2, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              13
  CLUS_3             4               8
D28V3, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             6              47
  CLUS_2             2              61
  CLUS_3             3              33
  CLUS_4             1              19
D28V4, multiclass
D28V5, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             1              23
  CLUS_3             4              42
D28V6, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             6              59
  CLUS_3             2              33
  CLUS_4             2              22
D28V7, multiclass
D28V8, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             8              49
  CLUS_3             2              50
D28V9, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             8              64
  CLUS_3             3              36
D28V10, multiclass
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  CLUS_1             0              55
  CLUS_2            10              81
  CLUS_3             2              20

Clustering(29) Variable = CRIPAK MUTATION ANALYSIS
D29V1, multiclass
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-3398       TCGA-44-3918 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
D29V2, multiclass
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-3398       TCGA-44-3918 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
D29V3, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               50
  CLUS_2              5               58
  CLUS_3              2               34
  CLUS_4              1               19
D29V4, multiclass
D29V5, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               62
  CLUS_2              2               22
  CLUS_3              5               41
D29V6, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              3               32
  CLUS_4              3               21
D29V7, multiclass
D29V8, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               56
  CLUS_2              4               53
  CLUS_3              2               50
D29V9, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               54
  CLUS_2              5               67
  CLUS_3              3               36
D29V10, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               52
  CLUS_2              8               83
  CLUS_3              0               22

Clustering(30) Variable = PABPC3 MUTATION ANALYSIS
D30V1, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D30V2, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D30V3, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              1               19
D30V4, multiclass
D30V5, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              2               22
  CLUS_3              2               44
D30V6, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              3               62
  CLUS_3              2               33
  CLUS_4              1               23
D30V7, multiclass
D30V8, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              4               53
  CLUS_3              2               50
D30V9, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              5               52
  CLUS_2              2               70
  CLUS_3              1               38
D30V10, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              5               50
  CLUS_2              3               88
  CLUS_3              0               22

Clustering(31) Variable = LRRIQ3 MUTATION ANALYSIS
D31V1, multiclass
D31V2, multiclass
D31V3, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              5               58
  CLUS_3              2               34
  CLUS_4              1               19
D31V4, multiclass
D31V5, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              0               24
  CLUS_3              3               43
D31V6, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              4               61
  CLUS_3              2               33
  CLUS_4              1               23
D31V7, multiclass
D31V8, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              5               56
  CLUS_2              2               55
  CLUS_3              3               49
D31V9, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              4               53
  CLUS_2              4               68
  CLUS_3              2               37
D31V10, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              5               50
  CLUS_2              5               86
  CLUS_3              0               22

Clustering(32) Variable = ZNF804A MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               3                 6
  CLUS_3               0                12
  CLUS_4               1                 5
D32V2, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               0                13
  CLUS_3               4                 8
D32V3, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               7                46
  CLUS_2              11                52
  CLUS_3               7                29
  CLUS_4               5                15
D32V4, multiclass
D32V5, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               9                56
  CLUS_2               4                20
  CLUS_3              10                36
D32V6, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               1                10
  CLUS_2               8                57
  CLUS_3               9                26
  CLUS_4               5                19
D32V7, multiclass
D32V8, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               7                54
  CLUS_2              13                44
  CLUS_3              10                42
D32V9, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               7                50
  CLUS_2              15                57
  CLUS_3               7                32
D32V10, multiclass
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  CLUS_1               6                49
  CLUS_2              21                70
  CLUS_3               2                20

Clustering(33) Variable = C18ORF34 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                0                 12
  CLUS_4                1                  5
D33V2, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                0                 13
  CLUS_3                2                 10
D33V3, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                1                 62
  CLUS_3               11                 25
  CLUS_4                2                 18
D33V4, multiclass
D33V5, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                5                 60
  CLUS_2                0                 24
  CLUS_3                6                 40
D33V6, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                3                 62
  CLUS_3                6                 29
  CLUS_4                1                 23
D33V7, multiclass
D33V8, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                3                 58
  CLUS_2               10                 47
  CLUS_3                6                 46
D33V9, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                3                 54
  CLUS_2               12                 60
  CLUS_3                3                 36
D33V10, multiclass
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  CLUS_1                4                 51
  CLUS_2               14                 77
  CLUS_3                0                 22

Clustering(34) Variable = SERPINB4 MUTATION ANALYSIS
D34V1, multiclass
[1] "Remove cluster labels:" "SERPINB4 MUTATED"      
clus
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-3398 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3774 
"SERPINB4 WILD-TYPE" 
D34V2, multiclass
[1] "Remove cluster labels:" "SERPINB4 MUTATED"      
clus
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-3398 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3774 
"SERPINB4 WILD-TYPE" 
D34V3, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                1                 52
  CLUS_2                6                 57
  CLUS_3                2                 34
  CLUS_4                1                 19
D34V4, multiclass
D34V5, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                2                 63
  CLUS_2                3                 21
  CLUS_3                2                 44
D34V6, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                1                 64
  CLUS_3                2                 33
  CLUS_4                3                 21
D34V7, multiclass
D34V8, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                2                 55
  CLUS_3                3                 49
D34V9, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                4                 53
  CLUS_2                2                 70
  CLUS_3                2                 37
D34V10, multiclass
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  CLUS_1                2                 53
  CLUS_2                5                 86
  CLUS_3                1                 21

Clustering(35) Variable = OR2T34 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              1               11
  CLUS_4              1                5
D35V2, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               11
  CLUS_3              1               11
D35V3, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               61
  CLUS_3              4               32
  CLUS_4              2               18
D35V4, multiclass
D35V5, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              1               23
  CLUS_3              5               41
D35V6, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              4               31
  CLUS_4              0               24
D35V7, multiclass
D35V8, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              6               51
  CLUS_3              2               50
D35V9, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              6               66
  CLUS_3              3               36
D35V10, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              9               82
  CLUS_3              0               22

Clustering(36) Variable = ZNF492 MUTATION ANALYSIS
D36V1, multiclass
D36V2, multiclass
D36V3, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              3               60
  CLUS_3              1               35
  CLUS_4              1               19
D36V4, multiclass
D36V5, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              1               23
  CLUS_3              1               45
D36V6, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               60
  CLUS_3              1               34
  CLUS_4              1               23
D36V7, multiclass
D36V8, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              3               54
  CLUS_3              1               51
D36V9, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              3               69
  CLUS_3              1               38
D36V10, multiclass
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  CLUS_1              4               51
  CLUS_2              3               88
  CLUS_3              0               22

Clustering(37) Variable = OR4C15 MUTATION ANALYSIS
D37V1, multiclass
[1] "Remove cluster labels:" "OR4C15 MUTATED"        
clus
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
D37V2, multiclass
[1] "Remove cluster labels:" "OR4C15 MUTATED"        
clus
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
D37V3, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              8               45
  CLUS_2              4               59
  CLUS_3              0               36
  CLUS_4              1               19
D37V4, multiclass
D37V5, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              8               57
  CLUS_2              1               23
  CLUS_3              2               44
D37V6, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               59
  CLUS_3              3               32
  CLUS_4              2               22
D37V7, multiclass
D37V8, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              7               50
  CLUS_3              4               48
D37V9, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              8               64
  CLUS_3              1               38
D37V10, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              9               82
  CLUS_3              0               22

Clustering(38) Variable = TBX22 MUTATION ANALYSIS
D38V1, multiclass
[1] "Remove cluster labels:" "TBX22 MUTATED"         
clus
  TBX22 MUTATED TBX22 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
D38V2, multiclass
[1] "Remove cluster labels:" "TBX22 MUTATED"         
clus
  TBX22 MUTATED TBX22 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
D38V3, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             4              59
  CLUS_3             3              33
  CLUS_4             1              19
D38V4, multiclass
D38V5, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             0              24
  CLUS_3             2              44
D38V6, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              62
  CLUS_3             3              32
  CLUS_4             1              23
D38V7, multiclass
D38V8, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             5              52
  CLUS_3             5              47
D38V9, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             8              64
  CLUS_3             3              36
D38V10, multiclass
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  CLUS_1             2              53
  CLUS_2            10              81
  CLUS_3             0              22

Clustering(39) Variable = U2AF1 MUTATION ANALYSIS
D39V1, multiclass
[1] "Remove cluster labels:" "U2AF1 MUTATED"         
clus
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
D39V2, multiclass
[1] "Remove cluster labels:" "U2AF1 MUTATED"         
clus
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
D39V3, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             0              36
  CLUS_4             0              20
D39V4, multiclass
D39V5, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             1              23
  CLUS_3             0              46
D39V6, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             1              34
  CLUS_4             1              23
D39V7, multiclass
D39V8, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             3              54
  CLUS_3             1              51
D39V9, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             4              53
  CLUS_2             2              70
  CLUS_3             0              39
D39V10, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             5              50
  CLUS_2             1              90
  CLUS_3             0              22

Clustering(40) Variable = FERD3L MUTATION ANALYSIS
D40V1, multiclass
[1] "Remove cluster labels:" "FERD3L MUTATED"        
clus
  FERD3L MUTATED FERD3L WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
D40V2, multiclass
[1] "Remove cluster labels:" "FERD3L MUTATED"        
clus
  FERD3L MUTATED FERD3L WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
D40V3, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               51
  CLUS_2              4               59
  CLUS_3              0               36
  CLUS_4              1               19
D40V4, multiclass
D40V5, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               63
  CLUS_2              1               23
  CLUS_3              3               43
D40V6, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              1               34
  CLUS_4              1               23
D40V7, multiclass
D40V8, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              3               58
  CLUS_2              2               55
  CLUS_3              2               50
D40V9, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              3               54
  CLUS_2              1               71
  CLUS_3              3               36
D40V10, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              1               54
  CLUS_2              3               88
  CLUS_3              3               19

Clustering(41) Variable = LRRTM4 MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              1               11
  CLUS_4              1                5
D41V2, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               12
  CLUS_3              2               10
D41V3, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              5               48
  CLUS_2              7               56
  CLUS_3              3               33
  CLUS_4              3               17
D41V4, multiclass
D41V5, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              1               23
  CLUS_3              7               39
D41V6, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               59
  CLUS_3              6               29
  CLUS_4              1               23
D41V7, multiclass
D41V8, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              3               54
  CLUS_3             10               42
D41V9, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              1               56
  CLUS_2             10               62
  CLUS_3              6               33
D41V10, multiclass
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CLUS_1              1               54
  CLUS_2             15               76
  CLUS_3              1               21

Clustering(42) Variable = OR5W2 MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2               3
  CLUS_2             0               9
  CLUS_3             0              12
  CLUS_4             1               5
D42V2, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              13
  CLUS_3             1              11
D42V3, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             1              62
  CLUS_3             6              30
  CLUS_4             1              19
D42V4, multiclass
D42V5, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              23
  CLUS_3             4              42
D42V6, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              64
  CLUS_3             4              31
  CLUS_4             1              23
D42V7, multiclass
D42V8, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             3              54
  CLUS_3             6              46
D42V9, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             8              64
  CLUS_3             1              38
D42V10, multiclass
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             7              84
  CLUS_3             1              21

Clustering(43) Variable = RIT1 MUTATION ANALYSIS
D43V1, multiclass
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-64-1676     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D43V2, multiclass
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-64-1676     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D43V3, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            3             60
  CLUS_3            4             32
  CLUS_4            1             19
D43V4, multiclass
D43V5, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            4             61
  CLUS_2            0             24
  CLUS_3            3             43
D43V6, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             63
  CLUS_3            2             33
  CLUS_4            3             21
D43V7, multiclass
D43V8, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            3             58
  CLUS_2            2             55
  CLUS_3            3             49
D43V9, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            4             68
  CLUS_3            2             37
D43V10, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            4             87
  CLUS_3            0             22

Clustering(44) Variable = OR5D14 MUTATION ANALYSIS
D44V1, multiclass
D44V2, multiclass
D44V3, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              5               48
  CLUS_2              5               58
  CLUS_3              3               33
  CLUS_4              0               20
D44V4, multiclass
D44V5, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              1               23
  CLUS_3              2               44
D44V6, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              6               59
  CLUS_3              1               34
  CLUS_4              0               24
D44V7, multiclass
D44V8, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              4               53
  CLUS_3              5               47
D44V9, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              4               53
  CLUS_2              6               66
  CLUS_3              2               37
D44V10, multiclass
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              7               84
  CLUS_3              2               20

Clustering(45) Variable = OR8H2 MUTATION ANALYSIS
D45V1, multiclass
[1] "Remove cluster labels:" "OR8H2 MUTATED"         
clus
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
D45V2, multiclass
[1] "Remove cluster labels:" "OR8H2 MUTATED"         
clus
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
D45V3, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             3              60
  CLUS_3             4              32
  CLUS_4             0              20
D45V4, multiclass
D45V5, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             0              24
  CLUS_3             6              40
D45V6, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             2              63
  CLUS_3             5              30
  CLUS_4             1              23
D45V7, multiclass
D45V8, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             6              51
  CLUS_3             4              48
D45V9, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             4              53
  CLUS_2             3              69
  CLUS_3             4              35
D45V10, multiclass
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             6              85
  CLUS_3             1              21

Clustering(46) Variable = NRG3 MUTATION ANALYSIS
D46V1, multiclass
[1] "Remove cluster labels:" "NRG3 MUTATED"          
clus
  NRG3 MUTATED NRG3 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4122     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2665     TCGA-44-2666 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
D46V2, multiclass
[1] "Remove cluster labels:" "NRG3 MUTATED"          
clus
  NRG3 MUTATED NRG3 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4122     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2665     TCGA-44-2666 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
D46V3, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            5             48
  CLUS_2            2             61
  CLUS_3            4             32
  CLUS_4            2             18
D46V4, multiclass
D46V5, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            4             61
  CLUS_2            0             24
  CLUS_3            4             42
D46V6, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            3             62
  CLUS_3            3             32
  CLUS_4            1             23
D46V7, multiclass
D46V8, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            6             51
  CLUS_3            5             47
D46V9, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            9             63
  CLUS_3            1             38
D46V10, multiclass
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  CLUS_1            2             53
  CLUS_2           10             81
  CLUS_3            0             22

Clustering(47) Variable = HEATR7B2 MUTATION ANALYSIS
D47V1, multiclass
[1] "Remove cluster labels:" "HEATR7B2 MUTATED"      
clus
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                 2                 30 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3919         TCGA-44-4112 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1677         TCGA-64-1678 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-1680         TCGA-67-3770         TCGA-67-3771 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
D47V2, multiclass
[1] "Remove cluster labels:" "HEATR7B2 MUTATED"      
clus
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                 2                 30 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3919         TCGA-44-4112 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1677         TCGA-64-1678 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-1680         TCGA-67-3770         TCGA-67-3771 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
D47V3, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                4                 49
  CLUS_2                9                 54
  CLUS_3                3                 33
  CLUS_4                4                 16
D47V4, multiclass
D47V5, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                6                 59
  CLUS_2                1                 23
  CLUS_3                8                 38
D47V6, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                4                 61
  CLUS_3                6                 29
  CLUS_4                2                 22
D47V7, multiclass
D47V8, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                4                 57
  CLUS_2                8                 49
  CLUS_3                8                 44
D47V9, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                4                 53
  CLUS_2                9                 63
  CLUS_3                6                 33
D47V10, multiclass
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  CLUS_1                4                 51
  CLUS_2               13                 78
  CLUS_3                2                 20

Clustering(48) Variable = ZNF268 MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              2                7
  CLUS_3              0               12
  CLUS_4              1                5
D48V2, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               12
  CLUS_3              2               10
D48V3, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              1               62
  CLUS_3              0               36
  CLUS_4              1               19
D48V4, multiclass
D48V5, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              0               24
  CLUS_3              0               46
D48V6, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               60
  CLUS_3              0               35
  CLUS_4              0               24
D48V7, multiclass
D48V8, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              2               55
  CLUS_3              2               50
D48V9, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              4               68
  CLUS_3              0               39
D48V10, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              4               87
  CLUS_3              0               22

Clustering(49) Variable = OR5I1 MUTATION ANALYSIS
D49V1, multiclass
D49V2, multiclass
D49V3, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             6              57
  CLUS_3             1              35
  CLUS_4             1              19
D49V4, multiclass
D49V5, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             2              22
  CLUS_3             4              42
D49V6, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             3              32
  CLUS_4             2              22
D49V7, multiclass
D49V8, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             3              54
  CLUS_3             4              48
D49V9, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             4              68
  CLUS_3             5              34
D49V10, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             7              84
  CLUS_3             2              20

Clustering(50) Variable = KCNT2 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             0               6
D50V2, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0              13
  CLUS_3             3               9
D50V3, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             5              58
  CLUS_3             6              30
  CLUS_4             2              18
D50V4, multiclass
D50V5, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             1              23
  CLUS_3             5              41
D50V6, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             5              30
  CLUS_4             2              22
D50V7, multiclass
D50V8, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             7              50
  CLUS_3             7              45
D50V9, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2            11              61
  CLUS_3             4              35
D50V10, multiclass
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  CLUS_1             2              53
  CLUS_2            15              76
  CLUS_3             0              22

Clustering(51) Variable = HGF MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           0             5
  CLUS_2           2             7
  CLUS_3           2            10
  CLUS_4           0             6
D51V2, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           0             7
  CLUS_2           2            11
  CLUS_3           2            10
D51V3, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           8            45
  CLUS_2           4            59
  CLUS_3           2            34
  CLUS_4           2            18
D51V4, multiclass
D51V5, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           6            59
  CLUS_2           0            24
  CLUS_3           5            41
D51V6, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           1            10
  CLUS_2           5            60
  CLUS_3           4            31
  CLUS_4           1            23
D51V7, multiclass
D51V8, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           4            57
  CLUS_2           7            50
  CLUS_3           5            47
D51V9, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           2            55
  CLUS_2          11            61
  CLUS_3           3            36
D51V10, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           2            53
  CLUS_2          14            77
  CLUS_3           0            22

Clustering(52) Variable = THEMIS MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1                4
  CLUS_2              0                9
  CLUS_3              2               10
  CLUS_4              1                5
D52V2, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               11
  CLUS_3              1               11
D52V3, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              5               48
  CLUS_2              3               60
  CLUS_3              2               34
  CLUS_4              0               20
D52V4, multiclass
D52V5, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               61
  CLUS_2              1               23
  CLUS_3              3               43
D52V6, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              2               33
  CLUS_4              2               22
D52V7, multiclass
D52V8, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               57
  CLUS_2              3               54
  CLUS_3              3               49
D52V9, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              3               54
  CLUS_2              5               67
  CLUS_3              1               38
D52V10, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              3               52
  CLUS_2              6               85
  CLUS_3              0               22

Clustering(53) Variable = IL1RAPL1 MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                1                  5
D53V2, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                 12
  CLUS_3                2                 10
D53V3, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                3                 60
  CLUS_3                1                 35
  CLUS_4                2                 18
D53V4, multiclass
D53V5, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 62
  CLUS_2                2                 22
  CLUS_3                2                 44
D53V6, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 63
  CLUS_3                3                 32
  CLUS_4                1                 23
D53V7, multiclass
D53V8, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                2                 59
  CLUS_2                7                 50
  CLUS_3                2                 50
D53V9, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 54
  CLUS_2                6                 66
  CLUS_3                2                 37
D53V10, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                2                 53
  CLUS_2                6                 85
  CLUS_3                3                 19

Clustering(54) Variable = ADAMTS2 MUTATION ANALYSIS
D54V1, multiclass
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D54V2, multiclass
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D54V3, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               4                49
  CLUS_2               4                59
  CLUS_3               3                33
  CLUS_4               3                17
D54V4, multiclass
D54V5, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               3                62
  CLUS_2               2                22
  CLUS_3               4                42
D54V6, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                61
  CLUS_3               3                32
  CLUS_4               2                22
D54V7, multiclass
D54V8, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               5                52
  CLUS_3               7                45
D54V9, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               3                54
  CLUS_2               7                65
  CLUS_3               4                35
D54V10, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               4                51
  CLUS_2              10                81
  CLUS_3               0                22

Clustering(55) Variable = SPANXN2 MUTATION ANALYSIS
D55V1, multiclass
[1] "Remove cluster labels:" "SPANXN2 MUTATED"       
clus
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
D55V2, multiclass
[1] "Remove cluster labels:" "SPANXN2 MUTATED"       
clus
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
D55V3, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               2                61
  CLUS_3               1                35
  CLUS_4               2                18
D55V4, multiclass
D55V5, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               5                60
  CLUS_2               0                24
  CLUS_3               1                45
D55V6, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                61
  CLUS_3               1                34
  CLUS_4               1                23
D55V7, multiclass
D55V8, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1                60
  CLUS_2               3                54
  CLUS_3               3                49
D55V9, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               5                67
  CLUS_3               1                38
D55V10, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1                54
  CLUS_2               6                85
  CLUS_3               0                22

Clustering(56) Variable = GBA3 MUTATION ANALYSIS
D56V1, multiclass
D56V2, multiclass
D56V3, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            4             59
  CLUS_3            2             34
  CLUS_4            0             20
D56V4, multiclass
D56V5, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            3             62
  CLUS_2            1             23
  CLUS_3            2             44
D56V6, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2              9
  CLUS_2            1             64
  CLUS_3            2             33
  CLUS_4            1             23
D56V7, multiclass
D56V8, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            2             55
  CLUS_3            5             47
D56V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            2             70
  CLUS_3            3             36
D56V10, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            4             87
  CLUS_3            1             21

Clustering(57) Variable = CPXCR1 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              0                9
  CLUS_3              1               11
  CLUS_4              2                4
D57V2, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              1               12
  CLUS_3              0               12
D57V3, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              0               63
  CLUS_3              6               30
  CLUS_4              2               18
D57V4, multiclass
D57V5, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              1               23
  CLUS_3              6               40
D57V6, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               63
  CLUS_3              7               28
  CLUS_4              0               24
D57V7, multiclass
D57V8, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              5               47
D57V9, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              5               67
  CLUS_3              3               36
D57V10, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              7               84
  CLUS_3              1               21

Clustering(58) Variable = TBX15 MUTATION ANALYSIS
D58V1, multiclass
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D58V2, multiclass
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D58V3, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             2              61
  CLUS_3             4              32
  CLUS_4             1              19
D58V4, multiclass
D58V5, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             0              24
  CLUS_3             2              44
D58V6, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              62
  CLUS_3             2              33
  CLUS_4             1              23
D58V7, multiclass
D58V8, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             4              53
  CLUS_3             4              48
D58V9, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             8              64
  CLUS_3             2              37
D58V10, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             1              54
  CLUS_2            10              81
  CLUS_3             0              22

Clustering(59) Variable = WDR49 MUTATION ANALYSIS
D59V1, multiclass
D59V2, multiclass
D59V3, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             4              59
  CLUS_3             4              32
  CLUS_4             0              20
D59V4, multiclass
D59V5, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             1              23
  CLUS_3             2              44
D59V6, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              62
  CLUS_3             2              33
  CLUS_4             2              22
D59V7, multiclass
D59V8, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             3              54
  CLUS_3             4              48
D59V9, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             0              39
D59V10, multiclass
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             5              86
  CLUS_3             1              21

Clustering(60) Variable = PCK1 MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1              8
  CLUS_3            1             11
  CLUS_4            2              4
D60V2, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            1             12
  CLUS_3            1             11
D60V3, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            3             60
  CLUS_3            3             33
  CLUS_4            1             19
D60V4, multiclass
D60V5, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            4             61
  CLUS_2            0             24
  CLUS_3            2             44
D60V6, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             62
  CLUS_3            2             33
  CLUS_4            1             23
D60V7, multiclass
D60V8, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            4             57
  CLUS_2            5             52
  CLUS_3            1             51
D60V9, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             54
  CLUS_2            5             67
  CLUS_3            2             37
D60V10, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            7             84
  CLUS_3            1             21

Clustering(61) Variable = CXORF59 MUTATION ANALYSIS
D61V1, multiclass
[1] "Remove cluster labels:" "CXORF59 MUTATED"       
clus
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
D61V2, multiclass
[1] "Remove cluster labels:" "CXORF59 MUTATED"       
clus
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
D61V3, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               4                59
  CLUS_3               2                34
  CLUS_4               1                19
D61V4, multiclass
D61V5, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               1                64
  CLUS_2               2                22
  CLUS_3               2                44
D61V6, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                64
  CLUS_3               2                33
  CLUS_4               1                23
D61V7, multiclass
D61V8, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               3                58
  CLUS_2               1                56
  CLUS_3               4                48
D61V9, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               6                66
  CLUS_3               0                39
D61V10, multiclass
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  CLUS_1               3                52
  CLUS_2               5                86
  CLUS_3               0                22

Clustering(62) Variable = ZIC4 MUTATION ANALYSIS
D62V1, multiclass
[1] "Remove cluster labels:" "ZIC4 MUTATED"          
clus
  ZIC4 MUTATED ZIC4 WILD-TYPE 
             2             30 
    TCGA-05-4249     TCGA-05-4250     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
D62V2, multiclass
[1] "Remove cluster labels:" "ZIC4 MUTATED"          
clus
  ZIC4 MUTATED ZIC4 WILD-TYPE 
             2             30 
    TCGA-05-4249     TCGA-05-4250     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
D62V3, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            5             48
  CLUS_2            4             59
  CLUS_3            4             32
  CLUS_4            0             20
D62V4, multiclass
D62V5, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            6             59
  CLUS_2            1             23
  CLUS_3            4             42
D62V6, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            5             60
  CLUS_3            4             31
  CLUS_4            2             22
D62V7, multiclass
D62V8, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            3             58
  CLUS_2            5             52
  CLUS_3            5             47
D62V9, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            4             53
  CLUS_2            8             64
  CLUS_3            1             38
D62V10, multiclass
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  CLUS_1            3             52
  CLUS_2           10             81
  CLUS_3            0             22

Clustering(63) Variable = OR52E4 MUTATION ANALYSIS
D63V1, multiclass
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
D63V2, multiclass
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
D63V3, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              0               53
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              1               19
D63V4, multiclass
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               2              102 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4487       TCGA-49-4488 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-49-6767 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5044       TCGA-50-5045       TCGA-50-5049       TCGA-50-5051 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-6543       TCGA-55-6642 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4676       TCGA-75-5122       TCGA-75-5125 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6831 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
D63V5, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              0               24
  CLUS_3              2               44
D63V6, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              2               33
  CLUS_4              0               24
D63V7, multiclass
D63V8, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               57
  CLUS_3              5               47
D63V9, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              5               67
  CLUS_3              0               39
D63V10, multiclass
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              5               86
  CLUS_3              0               22

Clustering(64) Variable = LRRIQ1 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              1                8
  CLUS_3              0               12
  CLUS_4              1                5
D64V2, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              0               13
  CLUS_3              2               10
D64V3, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              4               49
  CLUS_2             12               51
  CLUS_3              5               31
  CLUS_4              0               20
D64V4, multiclass
D64V5, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1             10               55
  CLUS_2              3               21
  CLUS_3              5               41
D64V6, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              8               57
  CLUS_3              4               31
  CLUS_4              5               19
D64V7, multiclass
D64V8, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              9               48
  CLUS_3              8               44
D64V9, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              6               51
  CLUS_2             11               61
  CLUS_3              4               35
D64V10, multiclass
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CLUS_1              6               49
  CLUS_2             14               77
  CLUS_3              1               21

Clustering(65) Variable = ASTN2 MUTATION ANALYSIS
D65V1, multiclass
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
D65V2, multiclass
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
D65V3, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             5              58
  CLUS_3             3              33
  CLUS_4             2              18
D65V4, multiclass
D65V5, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             2              22
  CLUS_3             5              41
D65V6, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             4              61
  CLUS_3             5              30
  CLUS_4             2              22
D65V7, multiclass
D65V8, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             4              57
  CLUS_2             3              54
  CLUS_3             7              45
D65V9, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             4              68
  CLUS_3             7              32
D65V10, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             9              82
  CLUS_3             1              21

Clustering(66) Variable = FAM71B MUTATION ANALYSIS
D66V1, multiclass
[1] "Remove cluster labels:" "FAM71B MUTATED"        
clus
  FAM71B MUTATED FAM71B WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
D66V2, multiclass
[1] "Remove cluster labels:" "FAM71B MUTATED"        
clus
  FAM71B MUTATED FAM71B WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
D66V3, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              3               50
  CLUS_2              6               57
  CLUS_3              3               33
  CLUS_4              2               18
D66V4, multiclass
D66V5, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              4               61
  CLUS_2              3               21
  CLUS_3              4               42
D66V6, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              1               10
  CLUS_2              4               61
  CLUS_3              3               32
  CLUS_4              3               21
D66V7, multiclass
D66V8, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              6               55
  CLUS_2              6               51
  CLUS_3              2               50
D66V9, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              5               52
  CLUS_2              7               65
  CLUS_3              2               37
D66V10, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  CLUS_1              7               48
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(67) Variable = EPHB1 MUTATION ANALYSIS
D67V1, multiclass
[1] "Remove cluster labels:" "EPHB1 MUTATED"         
clus
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
D67V2, multiclass
[1] "Remove cluster labels:" "EPHB1 MUTATED"         
clus
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
D67V3, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             5              58
  CLUS_3             4              32
  CLUS_4             4              16
D67V4, multiclass
D67V5, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             7              58
  CLUS_2             1              23
  CLUS_3             6              40
D67V6, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             7              28
  CLUS_4             2              22
D67V7, multiclass
D67V8, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             8              49
  CLUS_3             7              45
D67V9, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2            11              61
  CLUS_3             3              36
D67V10, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2            13              78
  CLUS_3             1              21

Clustering(68) Variable = OR8H3 MUTATION ANALYSIS
D68V1, multiclass
[1] "Remove cluster labels:" "OR8H3 MUTATED"         
clus
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
D68V2, multiclass
[1] "Remove cluster labels:" "OR8H3 MUTATED"         
clus
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
D68V3, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             4              59
  CLUS_3             1              35
  CLUS_4             1              19
D68V4, multiclass
D68V5, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             0              24
  CLUS_3             3              43
D68V6, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             2              33
  CLUS_4             1              23
D68V7, multiclass
D68V8, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             6              51
  CLUS_3             3              49
D68V9, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             4              35
D68V10, multiclass
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             6              85
  CLUS_3             2              20

Clustering(69) Variable = RPL10L MUTATION ANALYSIS
D69V1, multiclass
[1] "Remove cluster labels:" "RPL10L MUTATED"        
clus
  RPL10L MUTATED RPL10L WILD-TYPE 
               1               31 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
D69V2, multiclass
[1] "Remove cluster labels:" "RPL10L MUTATED"        
clus
  RPL10L MUTATED RPL10L WILD-TYPE 
               1               31 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
D69V3, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              3               50
  CLUS_2              1               62
  CLUS_3              2               34
  CLUS_4              0               20
D69V4, multiclass
D69V5, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              3               62
  CLUS_2              0               24
  CLUS_3              1               45
D69V6, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               63
  CLUS_3              1               34
  CLUS_4              0               24
D69V7, multiclass
D69V8, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              2               59
  CLUS_2              3               54
  CLUS_3              1               51
D69V9, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              3               54
  CLUS_2              0               72
  CLUS_3              2               37
D69V10, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  CLUS_1              2               53
  CLUS_2              2               89
  CLUS_3              1               21

Clustering(70) Variable = OR4S2 MUTATION ANALYSIS
D70V1, multiclass
[1] "Remove cluster labels:" "OR4S2 MUTATED"         
clus
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              2              30 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
D70V2, multiclass
[1] "Remove cluster labels:" "OR4S2 MUTATED"         
clus
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              2              30 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
D70V3, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             2              61
  CLUS_3             1              35
  CLUS_4             0              20
D70V4, multiclass
D70V5, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             4              42
D70V6, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             4              31
  CLUS_4             0              24
D70V7, multiclass
D70V8, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              56
  CLUS_3             3              49
D70V9, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             3              69
  CLUS_3             2              37
D70V10, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             4              87
  CLUS_3             1              21

Clustering(71) Variable = PJA1 MUTATION ANALYSIS
D71V1, multiclass
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D71V2, multiclass
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D71V3, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            2             61
  CLUS_3            1             35
  CLUS_4            2             18
D71V4, multiclass
D71V5, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             64
  CLUS_2            1             23
  CLUS_3            3             43
D71V6, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             63
  CLUS_3            2             33
  CLUS_4            1             23
D71V7, multiclass
D71V8, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            0             61
  CLUS_2            4             53
  CLUS_3            4             48
D71V9, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            5             67
  CLUS_3            1             38
D71V10, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            6             85
  CLUS_3            0             22

Clustering(72) Variable = INHBA MUTATION ANALYSIS
D72V1, multiclass
D72V2, multiclass
D72V3, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             2              51
  CLUS_2             4              59
  CLUS_3             1              35
  CLUS_4             2              18
D72V4, multiclass
D72V5, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             3              62
  CLUS_2             3              21
  CLUS_3             2              44
D72V6, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             3              32
  CLUS_4             2              22
D72V7, multiclass
D72V8, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             2              59
  CLUS_2             3              54
  CLUS_3             4              48
D72V9, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             3              54
  CLUS_2             3              69
  CLUS_3             2              37
D72V10, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              54
  CLUS_2             5              86
  CLUS_3             2              20

Clustering(73) Variable = RBM10 MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             4               8
  CLUS_4             0               6
D73V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4               9
  CLUS_3             1              11
D73V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              59
  CLUS_3             3              33
  CLUS_4             2              18
D73V4, multiclass
D73V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              23
  CLUS_3             4              42
D73V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             2              33
  CLUS_4             2              22
D73V7, multiclass
D73V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              57
  CLUS_2             4              53
  CLUS_3             4              48
D73V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              52
  CLUS_2             5              67
  CLUS_3             2              37
D73V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             7              84
  CLUS_3             1              21

Clustering(74) Variable = MARCH11 MUTATION ANALYSIS
D74V1, multiclass
[1] "Remove cluster labels:" "MARCH11 MUTATED"       
clus
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
D74V2, multiclass
[1] "Remove cluster labels:" "MARCH11 MUTATED"       
clus
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
D74V3, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               4                59
  CLUS_3               1                35
  CLUS_4               1                19
D74V4, multiclass
D74V5, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               3                62
  CLUS_2               0                24
  CLUS_3               2                44
D74V6, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                63
  CLUS_3               2                33
  CLUS_4               1                23
D74V7, multiclass
D74V8, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               3                54
  CLUS_3               3                49
D74V9, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               4                68
  CLUS_3               3                36
D74V10, multiclass
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               6                85
  CLUS_3               0                22

Clustering(75) Variable = OR14I1 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              1                8
  CLUS_3              1               11
  CLUS_4              0                6
D75V2, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               12
  CLUS_3              1               11
D75V3, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              0               63
  CLUS_3              1               35
  CLUS_4              2               18
D75V4, multiclass
[1] "Remove cluster labels:" "OR14I1 MUTATED"        
clus
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4676       TCGA-75-5122       TCGA-75-5125 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
D75V5, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              0               65
  CLUS_2              1               23
  CLUS_3              2               44
D75V6, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              1               34
  CLUS_4              1               23
D75V7, multiclass
D75V8, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              2               55
  CLUS_3              3               49
D75V9, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              3               69
  CLUS_3              2               37
D75V10, multiclass
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              4               87
  CLUS_3              0               22

Clustering(76) Variable = PTH MUTATION ANALYSIS
D76V1, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774 
"PTH WILD-TYPE" 
D76V2, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774 
"PTH WILD-TYPE" 
D76V3, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           1            52
  CLUS_2           1            62
  CLUS_3           1            35
  CLUS_4           0            20
D76V4, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1           103 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6207    TCGA-75-6211 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D76V5, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2661    TCGA-44-2665 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D76V6, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2661    TCGA-44-2665 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D76V7, multiclass
D76V8, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           1            60
  CLUS_2           1            56
  CLUS_3           1            51
D76V9, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           2            55
  CLUS_2           1            71
  CLUS_3           0            39
D76V10, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           2            53
  CLUS_2           1            90
  CLUS_3           0            22

Clustering(77) Variable = FLI1 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            2              7
  CLUS_3            1             11
  CLUS_4            0              6
D77V2, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             12
  CLUS_3            2             10
D77V3, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            3             60
  CLUS_3            0             36
  CLUS_4            2             18
D77V4, multiclass
[1] "Remove cluster labels:" "FLI1 MUTATED"          
clus
  FLI1 MUTATED FLI1 WILD-TYPE 
             2            102 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-05-5429     TCGA-05-5715 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-75-6212     TCGA-80-5611 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-86-6562     TCGA-91-6828     TCGA-91-6829     TCGA-91-6831 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
D77V5, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            3             62
  CLUS_2            1             23
  CLUS_3            1             45
D77V6, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             62
  CLUS_3            1             34
  CLUS_4            1             23
D77V7, multiclass
D77V8, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            2             55
  CLUS_3            2             50
D77V9, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            3             54
  CLUS_2            3             69
  CLUS_3            0             39
D77V10, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            3             88
  CLUS_3            1             21

Clustering(78) Variable = GPR174 MUTATION ANALYSIS
D78V1, multiclass
D78V2, multiclass
D78V3, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              2               61
  CLUS_3              1               35
  CLUS_4              0               20
D78V4, multiclass
D78V5, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              4               61
  CLUS_2              1               23
  CLUS_3              1               45
D78V6, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               63
  CLUS_3              2               33
  CLUS_4              1               23
D78V7, multiclass
D78V8, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              1               56
  CLUS_3              3               49
D78V9, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              3               69
  CLUS_3              2               37
D78V10, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              3               88
  CLUS_3              2               20

Clustering(79) Variable = KRTAP19-6 MUTATION ANALYSIS
D79V1, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1677          TCGA-64-1678 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D79V2, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1677          TCGA-64-1678 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D79V3, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 4                  49
  CLUS_2                 0                  63
  CLUS_3                 0                  36
  CLUS_4                 0                  20
D79V4, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                 102 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4425          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-5375          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6767          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-5774          TCGA-64-5775 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-4679          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122          TCGA-75-5125 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-5147 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6203          TCGA-75-6205          TCGA-75-6207 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6211          TCGA-75-6212          TCGA-80-5611 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-86-6562          TCGA-91-6828          TCGA-91-6829 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D79V5, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 2                  63
  CLUS_2                 0                  24
  CLUS_3                 1                  45
D79V6, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 1                  10
  CLUS_2                 2                  63
  CLUS_3                 0                  35
  CLUS_4                 0                  24
D79V7, multiclass
D79V8, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 1                  60
  CLUS_2                 3                  54
  CLUS_3                 0                  52
D79V9, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 2                  55
  CLUS_2                 1                  71
  CLUS_3                 1                  38
D79V10, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 2                  53
  CLUS_2                 2                  89
  CLUS_3                 0                  22

Clustering(80) Variable = MAGEB18 MUTATION ANALYSIS
D80V1, multiclass
[1] "Remove cluster labels:" "MAGEB18 MUTATED"       
clus
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
D80V2, multiclass
[1] "Remove cluster labels:" "MAGEB18 MUTATED"       
clus
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
D80V3, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               2                61
  CLUS_3               1                35
  CLUS_4               1                19
D80V4, multiclass
D80V5, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               1                64
  CLUS_2               3                21
  CLUS_3               1                45
D80V6, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                63
  CLUS_3               2                33
  CLUS_4               1                23
D80V7, multiclass
D80V8, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               1                60
  CLUS_2               2                55
  CLUS_3               2                50
D80V9, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               2                70
  CLUS_3               1                38
D80V10, multiclass
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               2                89
  CLUS_3               1                21

Clustering(81) Variable = NHEDC1 MUTATION ANALYSIS
D81V1, multiclass
[1] "Remove cluster labels:" "NHEDC1 MUTATED"        
clus
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
D81V2, multiclass
[1] "Remove cluster labels:" "NHEDC1 MUTATED"        
clus
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
D81V3, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              4               59
  CLUS_3              0               36
  CLUS_4              2               18
D81V4, multiclass
D81V5, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              2               22
  CLUS_3              2               44
D81V6, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               63
  CLUS_3              2               33
  CLUS_4              3               21
D81V7, multiclass
D81V8, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              2               55
  CLUS_3              5               47
D81V9, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              6               66
  CLUS_3              2               37
D81V10, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              0               55
  CLUS_2              8               83
  CLUS_3              1               21

Clustering(82) Variable = OR2T27 MUTATION ANALYSIS
D82V1, multiclass
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D82V2, multiclass
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D82V3, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              4               59
  CLUS_3              1               35
  CLUS_4              2               18
D82V4, multiclass
D82V5, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              0               65
  CLUS_2              1               23
  CLUS_3              5               41
D82V6, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              4               31
  CLUS_4              1               23
D82V7, multiclass
D82V8, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              2               55
  CLUS_3              4               48
D82V9, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              4               68
  CLUS_3              3               36
D82V10, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              6               85
  CLUS_3              1               21

Clustering(83) Variable = SYT4 MUTATION ANALYSIS
D83V1, multiclass
D83V2, multiclass
D83V3, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            3             60
  CLUS_3            4             32
  CLUS_4            3             17
D83V4, multiclass
D83V5, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            4             61
  CLUS_2            1             23
  CLUS_3            2             44
D83V6, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             62
  CLUS_3            2             33
  CLUS_4            2             22
D83V7, multiclass
D83V8, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            4             57
  CLUS_2            4             53
  CLUS_3            3             49
D83V9, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            5             67
  CLUS_3            2             37
D83V10, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            5             86
  CLUS_3            1             21

Clustering(84) Variable = ZSWIM2 MUTATION ANALYSIS
D84V1, multiclass
[1] "Remove cluster labels:" "ZSWIM2 MUTATED"        
clus
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
D84V2, multiclass
[1] "Remove cluster labels:" "ZSWIM2 MUTATED"        
clus
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
D84V3, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              6               57
  CLUS_3              3               33
  CLUS_4              1               19
D84V4, multiclass
D84V5, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              7               58
  CLUS_2              2               22
  CLUS_3              3               43
D84V6, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              6               59
  CLUS_3              2               33
  CLUS_4              3               21
D84V7, multiclass
D84V8, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              6               51
  CLUS_3              3               49
D84V9, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              7               65
  CLUS_3              3               36
D84V10, multiclass
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              8               83
  CLUS_3              3               19

Clustering(85) Variable = MYL10 MUTATION ANALYSIS
D85V1, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D85V2, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D85V3, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             1              62
  CLUS_3             2              34
  CLUS_4             0              20
D85V4, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-5899      TCGA-55-6543 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-4679      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-75-5122      TCGA-75-5125 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D85V5, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             0              24
  CLUS_3             1              45
D85V6, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              62
  CLUS_3             1              34
  CLUS_4             1              23
D85V7, multiclass
D85V8, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             3              54
  CLUS_3             1              51
D85V9, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             3              69
  CLUS_3             0              39
D85V10, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             3              88
  CLUS_3             0              22

Clustering(86) Variable = KRTAP15-1 MUTATION ANALYSIS
D86V1, multiclass
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3774 
"KRTAP15-1 WILD-TYPE" 
D86V2, multiclass
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3774 
"KRTAP15-1 WILD-TYPE" 
D86V3, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 0                  53
  CLUS_2                 1                  62
  CLUS_3                 2                  34
  CLUS_4                 2                  18
D86V4, multiclass
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  2                 102 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4405 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4410          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4425          TCGA-05-4427 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-5375          TCGA-38-4631 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4487 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4490          TCGA-49-4512 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4514          TCGA-49-6742          TCGA-49-6743 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6744          TCGA-49-6745          TCGA-49-6767 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-5899 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6543          TCGA-55-6642          TCGA-55-6712 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-4679          TCGA-67-6215          TCGA-67-6216 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122          TCGA-75-5125 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-5147 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-75-6203          TCGA-75-6205          TCGA-75-6207 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-75-6211          TCGA-75-6212          TCGA-80-5611 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-86-6562          TCGA-91-6828          TCGA-91-6829 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
D86V5, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 1                  64
  CLUS_2                 1                  23
  CLUS_3                 1                  45
D86V6, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 0                  11
  CLUS_2                 0                  65
  CLUS_3                 2                  33
  CLUS_4                 1                  23
D86V7, multiclass
D86V8, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 1                  60
  CLUS_2                 0                  57
  CLUS_3                 4                  48
D86V9, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 0                  57
  CLUS_2                 4                  68
  CLUS_3                 1                  38
D86V10, multiclass
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  CLUS_1                 0                  55
  CLUS_2                 4                  87
  CLUS_3                 1                  21

Clustering(87) Variable = NTNG1 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             0              12
  CLUS_4             0               6
D87V2, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0              13
  CLUS_3             3               9
D87V3, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             3              33
  CLUS_4             2              18
D87V4, multiclass
D87V5, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             1              23
  CLUS_3             4              42
D87V6, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             3              32
  CLUS_4             2              22
D87V7, multiclass
D87V8, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             8              49
  CLUS_3             2              50
D87V9, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             3              36
D87V10, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             8              83
  CLUS_3             0              22

Clustering(88) Variable = OR2M7 MUTATION ANALYSIS
D88V1, multiclass
[1] "Remove cluster labels:" "OR2M7 MUTATED"         
clus
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
D88V2, multiclass
[1] "Remove cluster labels:" "OR2M7 MUTATED"         
clus
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
D88V3, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             5              58
  CLUS_3             1              35
  CLUS_4             1              19
D88V4, multiclass
D88V5, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             3              21
  CLUS_3             2              44
D88V6, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             3              32
  CLUS_4             3              21
D88V7, multiclass
D88V8, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             3              54
  CLUS_3             3              49
D88V9, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             2              70
  CLUS_3             5              34
D88V10, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             4              87
  CLUS_3             3              19

Clustering(89) Variable = SATB2 MUTATION ANALYSIS
D89V1, multiclass
[1] "Remove cluster labels:" "SATB2 MUTATED"         
clus
  SATB2 MUTATED SATB2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
D89V2, multiclass
[1] "Remove cluster labels:" "SATB2 MUTATED"         
clus
  SATB2 MUTATED SATB2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
D89V3, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             8              45
  CLUS_2             3              60
  CLUS_3             3              33
  CLUS_4             1              19
D89V4, multiclass
D89V5, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             1              23
  CLUS_3             6              40
D89V6, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             8              57
  CLUS_3             4              31
  CLUS_4             1              23
D89V7, multiclass
D89V8, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             9              48
  CLUS_3             4              48
D89V9, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             4              53
  CLUS_2             7              65
  CLUS_3             3              36
D89V10, multiclass
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             9              82
  CLUS_3             2              20

Clustering(90) Variable = OR5F1 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             2              10
  CLUS_4             1               5
D90V2, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             1              11
D90V3, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             6              57
  CLUS_3             3              33
  CLUS_4             0              20
D90V4, multiclass
D90V5, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             3              62
  CLUS_2             0              24
  CLUS_3             7              39
D90V6, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             5              30
  CLUS_4             1              23
D90V7, multiclass
D90V8, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             4              57
  CLUS_2             5              52
  CLUS_3             3              49
D90V9, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             4              53
  CLUS_2             6              66
  CLUS_3             2              37
D90V10, multiclass
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             8              83
  CLUS_3             0              22

Clustering(91) Variable = OR2W5 MUTATION ANALYSIS
D91V1, multiclass
[1] "Remove cluster labels:" "OR2W5 MUTATED"         
clus
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
D91V2, multiclass
[1] "Remove cluster labels:" "OR2W5 MUTATED"         
clus
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
D91V3, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             2              61
  CLUS_3             3              33
  CLUS_4             1              19
D91V4, multiclass
D91V5, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             2              44
D91V6, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             0              65
  CLUS_3             2              33
  CLUS_4             1              23
D91V7, multiclass
D91V8, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             2              55
  CLUS_3             4              48
D91V9, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             5              67
  CLUS_3             2              37
D91V10, multiclass
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  CLUS_1             0              55
  CLUS_2             6              85
  CLUS_3             1              21

Clustering(92) Variable = CMKLR1 MUTATION ANALYSIS
D92V1, multiclass
[1] "Remove cluster labels:" "CMKLR1 MUTATED"        
clus
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
D92V2, multiclass
[1] "Remove cluster labels:" "CMKLR1 MUTATED"        
clus
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
D92V3, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              3               60
  CLUS_3              1               35
  CLUS_4              1               19
D92V4, multiclass
D92V5, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              1               23
  CLUS_3              1               45
D92V6, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              1               34
  CLUS_4              1               23
D92V7, multiclass
D92V8, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              1               56
  CLUS_3              4               48
D92V9, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              3               69
  CLUS_3              1               38
D92V10, multiclass
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CLUS_1              4               51
  CLUS_2              3               88
  CLUS_3              0               22

Clustering(93) Variable = AKR1B10 MUTATION ANALYSIS
D93V1, multiclass
D93V2, multiclass
D93V3, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               1                62
  CLUS_3               1                35
  CLUS_4               0                20
D93V4, multiclass
D93V5, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               4                61
  CLUS_2               0                24
  CLUS_3               0                46
D93V6, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                62
  CLUS_3               1                34
  CLUS_4               0                24
D93V7, multiclass
D93V8, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               0                61
  CLUS_2               2                55
  CLUS_3               2                50
D93V9, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               2                70
  CLUS_3               1                38
D93V10, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               1                54
  CLUS_2               3                88
  CLUS_3               0                22

Clustering(94) Variable = DACH1 MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             3               3
D94V2, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             0              13
  CLUS_3             1              11
D94V3, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             2              61
  CLUS_3             5              31
  CLUS_4             0              20
D94V4, multiclass
D94V5, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             0              24
  CLUS_3             4              42
D94V6, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             4              61
  CLUS_3             4              31
  CLUS_4             1              23
D94V7, multiclass
D94V8, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             4              53
  CLUS_3             7              45
D94V9, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             7              65
  CLUS_3             1              38
D94V10, multiclass
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             8              83
  CLUS_3             0              22

Clustering(95) Variable = OR10K2 MUTATION ANALYSIS
D95V1, multiclass
[1] "Remove cluster labels:" "OR10K2 MUTATED"        
clus
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
D95V2, multiclass
[1] "Remove cluster labels:" "OR10K2 MUTATED"        
clus
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
D95V3, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              4               59
  CLUS_3              2               34
  CLUS_4              0               20
D95V4, multiclass
D95V5, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              5               41
D95V6, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              4               31
  CLUS_4              0               24
D95V7, multiclass
D95V8, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              2               55
  CLUS_3              4               48
D95V9, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              5               67
  CLUS_3              1               38
D95V10, multiclass
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              5               86
  CLUS_3              1               21

Clustering(96) Variable = ADAMTS16 MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                2                  4
D96V2, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                2                 11
  CLUS_3                1                 11
D96V3, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                8                 45
  CLUS_2                5                 58
  CLUS_3                7                 29
  CLUS_4                2                 18
D96V4, multiclass
D96V5, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                9                 56
  CLUS_2                3                 21
  CLUS_3                6                 40
D96V6, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                9                 56
  CLUS_3                6                 29
  CLUS_4                3                 21
D96V7, multiclass
D96V8, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                5                 56
  CLUS_2                8                 49
  CLUS_3                9                 43
D96V9, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                3                 54
  CLUS_2               15                 57
  CLUS_3                2                 37
D96V10, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                3                 52
  CLUS_2               17                 74
  CLUS_3                0                 22

Clustering(97) Variable = ARHGAP36 MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                1                  5
D97V2, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                 12
  CLUS_3                1                 11
D97V3, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                4                 49
  CLUS_2                4                 59
  CLUS_3                3                 33
  CLUS_4                2                 18
D97V4, multiclass
D97V5, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                8                 57
  CLUS_2                1                 23
  CLUS_3                2                 44
D97V6, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                7                 58
  CLUS_3                2                 33
  CLUS_4                1                 23
D97V7, multiclass
D97V8, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                4                 57
  CLUS_2                6                 51
  CLUS_3                3                 49
D97V9, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                5                 52
  CLUS_2                8                 64
  CLUS_3                0                 39
D97V10, multiclass
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  CLUS_1                5                 50
  CLUS_2                8                 83
  CLUS_3                0                 22

Clustering(98) Variable = FABP12 MUTATION ANALYSIS
D98V1, multiclass
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D98V2, multiclass
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D98V3, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              0               63
  CLUS_3              2               34
  CLUS_4              0               20
D98V4, multiclass
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              102 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-49-6767 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5044       TCGA-50-5045       TCGA-50-5049       TCGA-50-5051 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6594       TCGA-50-6595 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4676       TCGA-75-5122       TCGA-75-5126 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6831 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D98V5, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              1               45
D98V6, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              0               35
  CLUS_4              0               24
D98V7, multiclass
D98V8, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              2               55
  CLUS_3              0               52
D98V9, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              0               72
  CLUS_3              1               38
D98V10, multiclass
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              0               91
  CLUS_3              0               22

Clustering(99) Variable = C7 MUTATION ANALYSIS
D99V1, multiclass
[1] "Remove cluster labels:" "C7 MUTATED"            
clus
  C7 MUTATED C7 WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4249   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-35-4123   TCGA-44-2655   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3918 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
D99V2, multiclass
[1] "Remove cluster labels:" "C7 MUTATED"            
clus
  C7 MUTATED C7 WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4249   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-35-4123   TCGA-44-2655   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3918 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
D99V3, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          2           51
  CLUS_2          5           58
  CLUS_3          6           30
  CLUS_4          1           19
D99V4, multiclass
D99V5, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          4           61
  CLUS_2          2           22
  CLUS_3          3           43
D99V6, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          0           11
  CLUS_2          3           62
  CLUS_3          3           32
  CLUS_4          3           21
D99V7, multiclass
D99V8, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          2           59
  CLUS_2          4           53
  CLUS_3          7           45
D99V9, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          2           55
  CLUS_2          9           63
  CLUS_3          3           36
D99V10, multiclass
        clus
vv       C7 MUTATED C7 WILD-TYPE
  CLUS_1          2           53
  CLUS_2         12           79
  CLUS_3          0           22

Clustering(100) Variable = PI15 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            1              4
  CLUS_2            0              9
  CLUS_3            0             12
  CLUS_4            2              4
D100V2, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            3              4
  CLUS_2            0             13
  CLUS_3            0             12
D100V3, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            1             62
  CLUS_3            4             32
  CLUS_4            1             19
D100V4, multiclass
D100V5, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            2             63
  CLUS_2            0             24
  CLUS_3            4             42
D100V6, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             63
  CLUS_3            3             32
  CLUS_4            1             23
D100V7, multiclass
D100V8, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            3             54
  CLUS_3            3             49
D100V9, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            0             57
  CLUS_2            6             66
  CLUS_3            1             38
D100V10, multiclass
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            6             85
  CLUS_3            0             22

Clustering(101) Variable = NRXN1 MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             1              11
  CLUS_4             1               5
D101V2, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             3               9
D101V3, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             8              45
  CLUS_2             7              56
  CLUS_3             6              30
  CLUS_4             4              16
D101V4, multiclass
D101V5, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             8              57
  CLUS_2             3              21
  CLUS_3             8              38
D101V6, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             8              57
  CLUS_3             8              27
  CLUS_4             3              21
D101V7, multiclass
D101V8, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             9              48
  CLUS_3            13              39
D101V9, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             1              56
  CLUS_2            17              55
  CLUS_3             6              33
D101V10, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             1              54
  CLUS_2            22              69
  CLUS_3             1              21

Clustering(102) Variable = OR5D16 MUTATION ANALYSIS
D102V1, multiclass
[1] "Remove cluster labels:" "OR5D16 MUTATED"        
clus
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
D102V2, multiclass
[1] "Remove cluster labels:" "OR5D16 MUTATED"        
clus
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
D102V3, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              1               19
D102V4, multiclass
D102V5, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              0               24
  CLUS_3              5               41
D102V6, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              3               32
  CLUS_4              2               22
D102V7, multiclass
D102V8, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              2               50
D102V9, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              5               67
  CLUS_3              2               37
D102V10, multiclass
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  CLUS_1              0               55
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(103) Variable = LIPI MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            0              5
  CLUS_2            0              9
  CLUS_3            0             12
  CLUS_4            3              3
D103V2, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            3              4
  CLUS_2            0             13
  CLUS_3            0             12
D103V3, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             51
  CLUS_2            1             62
  CLUS_3            3             33
  CLUS_4            1             19
D103V4, multiclass
D103V5, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            3             62
  CLUS_2            2             22
  CLUS_3            2             44
D103V6, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            0             11
  CLUS_2            4             61
  CLUS_3            2             33
  CLUS_4            1             23
D103V7, multiclass
D103V8, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             59
  CLUS_2            1             56
  CLUS_3            4             48
D103V9, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            2             55
  CLUS_2            4             68
  CLUS_3            1             38
D103V10, multiclass
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  CLUS_1            1             54
  CLUS_2            4             87
  CLUS_3            2             20

Clustering(104) Variable = SEMA3A MUTATION ANALYSIS
D104V1, multiclass
[1] "Remove cluster labels:" "SEMA3A MUTATED"        
clus
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
D104V2, multiclass
[1] "Remove cluster labels:" "SEMA3A MUTATED"        
clus
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
D104V3, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              3               50
  CLUS_2              5               58
  CLUS_3              2               34
  CLUS_4              0               20
D104V4, multiclass
D104V5, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              5               60
  CLUS_2              0               24
  CLUS_3              3               43
D104V6, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               63
  CLUS_3              4               31
  CLUS_4              1               23
D104V7, multiclass
D104V8, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              5               47
D104V9, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              2               55
  CLUS_2              6               66
  CLUS_3              2               37
D104V10, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              2               53
  CLUS_2              8               83
  CLUS_3              0               22

Clustering(105) Variable = C1ORF49 MUTATION ANALYSIS
D105V1, multiclass
[1] "Remove cluster labels:" "C1ORF49 MUTATED"       
clus
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
D105V2, multiclass
[1] "Remove cluster labels:" "C1ORF49 MUTATED"       
clus
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
D105V3, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               0                63
  CLUS_3               1                35
  CLUS_4               3                17
D105V4, multiclass
D105V5, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                63
  CLUS_2               0                24
  CLUS_3               3                43
D105V6, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                64
  CLUS_3               3                32
  CLUS_4               0                24
D105V7, multiclass
D105V8, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               0                61
  CLUS_2               4                53
  CLUS_3               2                50
D105V9, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               4                68
  CLUS_3               0                39
D105V10, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               4                87
  CLUS_3               0                22

Clustering(106) Variable = SLC35F1 MUTATION ANALYSIS
D106V1, multiclass
[1] "Remove cluster labels:" "SLC35F1 MUTATED"       
clus
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-35-4123        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
D106V2, multiclass
[1] "Remove cluster labels:" "SLC35F1 MUTATED"       
clus
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-35-4123        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
D106V3, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               3                60
  CLUS_3               4                32
  CLUS_4               1                19
D106V4, multiclass
D106V5, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               3                62
  CLUS_2               0                24
  CLUS_3               3                43
D106V6, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                62
  CLUS_3               2                33
  CLUS_4               1                23
D106V7, multiclass
D106V8, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               3                54
  CLUS_3               4                48
D106V9, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               7                65
  CLUS_3               0                39
D106V10, multiclass
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               7                84
  CLUS_3               0                22

Clustering(107) Variable = PYHIN1 MUTATION ANALYSIS
D107V1, multiclass
D107V2, multiclass
D107V3, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              4               59
  CLUS_3              1               35
  CLUS_4              0               20
D107V4, multiclass
D107V5, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              4               61
  CLUS_2              1               23
  CLUS_3              1               45
D107V6, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              1               34
  CLUS_4              1               23
D107V7, multiclass
D107V8, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              1               56
  CLUS_3              4               48
D107V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              3               69
  CLUS_3              2               37
D107V10, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              0               55
  CLUS_2              5               86
  CLUS_3              1               21

Clustering(108) Variable = ANKRD7 MUTATION ANALYSIS
D108V1, multiclass
D108V2, multiclass
D108V3, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              2               61
  CLUS_3              2               34
  CLUS_4              1               19
D108V4, multiclass
D108V5, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              3               21
  CLUS_3              1               45
D108V6, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              1               34
  CLUS_4              3               21
D108V7, multiclass
D108V8, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              0               61
  CLUS_2              2               55
  CLUS_3              4               48
D108V9, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              3               69
  CLUS_3              2               37
D108V10, multiclass
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CLUS_1              0               55
  CLUS_2              4               87
  CLUS_3              1               21

Clustering(109) Variable = OLAH MUTATION ANALYSIS
D109V1, multiclass
[1] "Remove cluster labels:" "OLAH MUTATED"          
clus
  OLAH MUTATED OLAH WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" 
D109V2, multiclass
[1] "Remove cluster labels:" "OLAH MUTATED"          
clus
  OLAH MUTATED OLAH WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" 
D109V3, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             53
  CLUS_2            1             62
  CLUS_3            3             33
  CLUS_4            3             17
D109V4, multiclass
D109V5, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            1             64
  CLUS_2            0             24
  CLUS_3            4             42
D109V6, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             11
  CLUS_2            0             65
  CLUS_3            4             31
  CLUS_4            1             23
D109V7, multiclass
D109V8, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            1             60
  CLUS_2            0             57
  CLUS_3            6             46
D109V9, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             57
  CLUS_2            7             65
  CLUS_3            0             39
D109V10, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             55
  CLUS_2            7             84
  CLUS_3            0             22

Clustering(110) Variable = TMEM195 MUTATION ANALYSIS
D110V1, multiclass
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3771        TCGA-67-3772 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
D110V2, multiclass
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3771        TCGA-67-3772 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
D110V3, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               4                49
  CLUS_2               4                59
  CLUS_3               1                35
  CLUS_4               2                18
D110V4, multiclass
D110V5, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               3                62
  CLUS_2               1                23
  CLUS_3               3                43
D110V6, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                61
  CLUS_3               2                33
  CLUS_4               1                23
D110V7, multiclass
D110V8, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               4                57
  CLUS_2               2                55
  CLUS_3               5                47
D110V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               3                54
  CLUS_2               4                68
  CLUS_3               3                36
D110V10, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               7                84
  CLUS_3               1                21

Clustering(111) Variable = KRTAP11-1 MUTATION ANALYSIS
D111V1, multiclass
[1] "Remove cluster labels:" "KRTAP11-1 MUTATED"     
clus
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4250          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-44-2655 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1676          TCGA-64-1677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-67-3770 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3774 
"KRTAP11-1 WILD-TYPE" 
D111V2, multiclass
[1] "Remove cluster labels:" "KRTAP11-1 MUTATED"     
clus
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4250          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-44-2655 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1676          TCGA-64-1677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-67-3770 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3774 
"KRTAP11-1 WILD-TYPE" 
D111V3, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 3                  50
  CLUS_2                 2                  61
  CLUS_3                 1                  35
  CLUS_4                 0                  20
D111V4, multiclass
D111V5, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 4                  61
  CLUS_2                 2                  22
  CLUS_3                 0                  46
D111V6, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 2                   9
  CLUS_2                 4                  61
  CLUS_3                 0                  35
  CLUS_4                 0                  24
D111V7, multiclass
D111V8, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 3                  58
  CLUS_2                 3                  54
  CLUS_3                 0                  52
D111V9, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 1                  56
  CLUS_2                 2                  70
  CLUS_3                 3                  36
D111V10, multiclass
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  CLUS_1                 2                  53
  CLUS_2                 2                  89
  CLUS_3                 2                  20

Clustering(112) Variable = OR6N2 MUTATION ANALYSIS
D112V1, multiclass
[1] "Remove cluster labels:" "OR6N2 MUTATED"         
clus
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4122      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
D112V2, multiclass
[1] "Remove cluster labels:" "OR6N2 MUTATED"         
clus
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4122      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
D112V3, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              62
  CLUS_3             1              35
  CLUS_4             2              18
D112V4, multiclass
D112V5, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             1              23
  CLUS_3             4              42
D112V6, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              64
  CLUS_3             4              31
  CLUS_4             1              23
D112V7, multiclass
D112V8, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             3              54
  CLUS_3             4              48
D112V9, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             5              67
  CLUS_3             1              38
D112V10, multiclass
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             6              85
  CLUS_3             0              22

Clustering(113) Variable = PRIM2 MUTATION ANALYSIS
D113V1, multiclass
[1] "Remove cluster labels:" "PRIM2 MUTATED"         
clus
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-64-1676      TCGA-64-1677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
D113V2, multiclass
[1] "Remove cluster labels:" "PRIM2 MUTATED"         
clus
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-64-1676      TCGA-64-1677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
D113V3, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              61
  CLUS_3             6              30
  CLUS_4             0              20
D113V4, multiclass
D113V5, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             3              62
  CLUS_2             0              24
  CLUS_3             4              42
D113V6, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              62
  CLUS_3             4              31
  CLUS_4             0              24
D113V7, multiclass
D113V8, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             2              55
  CLUS_3             6              46
D113V9, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             5              67
  CLUS_3             5              34
D113V10, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             9              82
  CLUS_3             0              22

Clustering(114) Variable = C14ORF177 MUTATION ANALYSIS
D114V1, multiclass
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1676          TCGA-64-1677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
D114V2, multiclass
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1676          TCGA-64-1677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
D114V3, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 0                  53
  CLUS_2                 2                  61
  CLUS_3                 3                  33
  CLUS_4                 0                  20
D114V4, multiclass
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                 103 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4427          TCGA-05-4433          TCGA-05-5420 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5423          TCGA-05-5425          TCGA-05-5428 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5643          TCGA-44-5645          TCGA-44-6144 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6146          TCGA-44-6147 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6776          TCGA-44-6777          TCGA-44-6778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6779          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-49-6767          TCGA-50-5044 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5045          TCGA-50-5049          TCGA-50-5051 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5055          TCGA-50-5066          TCGA-50-5068 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5072          TCGA-50-5930          TCGA-50-5931 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5932          TCGA-50-5933          TCGA-50-5935 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5936          TCGA-50-5939          TCGA-50-5941 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5942          TCGA-50-5944          TCGA-50-5946 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-5774          TCGA-64-5775 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-4679          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4676          TCGA-75-5122 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-75-5125          TCGA-75-5126          TCGA-75-5146 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-75-5147          TCGA-75-6203          TCGA-75-6205 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-75-6207          TCGA-75-6211          TCGA-75-6212 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-80-5611          TCGA-86-6562          TCGA-91-6828 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6829          TCGA-91-6831          TCGA-91-6835 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6836 
"C14ORF177 WILD-TYPE" 
D114V5, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 1                  64
  CLUS_2                 0                  24
  CLUS_3                 2                  44
D114V6, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 0                  11
  CLUS_2                 2                  63
  CLUS_3                 1                  34
  CLUS_4                 0                  24
D114V7, multiclass
D114V8, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 0                  61
  CLUS_2                 2                  55
  CLUS_3                 3                  49
D114V9, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 0                  57
  CLUS_2                 4                  68
  CLUS_3                 1                  38
D114V10, multiclass
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  CLUS_1                 0                  55
  CLUS_2                 4                  87
  CLUS_3                 1                  21

Clustering(115) Variable = FAM48B1 MUTATION ANALYSIS
D115V1, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               0                 9
  CLUS_3               2                10
  CLUS_4               1                 5
D115V2, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                11
  CLUS_3               1                11
D115V3, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               2                61
  CLUS_3               6                30
  CLUS_4               1                19
D115V4, multiclass
D115V5, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               2                63
  CLUS_2               1                23
  CLUS_3               4                42
D115V6, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                61
  CLUS_3               3                32
  CLUS_4               0                24
D115V7, multiclass
D115V8, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               3                58
  CLUS_2               4                53
  CLUS_3               3                49
D115V9, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               3                54
  CLUS_2               4                68
  CLUS_3               2                37
D115V10, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               3                52
  CLUS_2               6                85
  CLUS_3               0                22

Clustering(116) Variable = KCNS2 MUTATION ANALYSIS
D116V1, multiclass
[1] "Remove cluster labels:" "KCNS2 MUTATED"         
clus
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              1              31 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
D116V2, multiclass
[1] "Remove cluster labels:" "KCNS2 MUTATED"         
clus
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              1              31 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
D116V3, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             0              36
  CLUS_4             1              19
D116V4, multiclass
D116V5, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             3              43
D116V6, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             2              33
  CLUS_4             1              23
D116V7, multiclass
D116V8, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             2              55
  CLUS_3             2              50
D116V9, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             2              70
  CLUS_3             2              37
D116V10, multiclass
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             2              89
  CLUS_3             2              20

Clustering(117) Variable = C7ORF58 MUTATION ANALYSIS
D117V1, multiclass
[1] "Remove cluster labels:" "C7ORF58 MUTATED"       
clus
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
D117V2, multiclass
[1] "Remove cluster labels:" "C7ORF58 MUTATED"       
clus
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
D117V3, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               8                45
  CLUS_2               4                59
  CLUS_3               3                33
  CLUS_4               2                18
D117V4, multiclass
D117V5, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               7                58
  CLUS_2               2                22
  CLUS_3               6                40
D117V6, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               6                59
  CLUS_3               6                29
  CLUS_4               0                24
D117V7, multiclass
D117V8, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               1                60
  CLUS_2               9                48
  CLUS_3               7                45
D117V9, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3                54
  CLUS_2               6                66
  CLUS_3               7                32
D117V10, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               4                51
  CLUS_2               9                82
  CLUS_3               3                19

Clustering(118) Variable = OR14A16 MUTATION ANALYSIS
D118V1, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               1                11
  CLUS_4               0                 6
D118V2, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               2                11
  CLUS_3               2                10
D118V3, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               5                48
  CLUS_2               5                58
  CLUS_3               1                35
  CLUS_4               1                19
D118V4, multiclass
D118V5, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               5                60
  CLUS_2               1                23
  CLUS_3               4                42
D118V6, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               7                58
  CLUS_3               1                34
  CLUS_4               2                22
D118V7, multiclass
D118V8, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               3                58
  CLUS_2               9                48
  CLUS_3               0                52
D118V9, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               5                52
  CLUS_2               5                67
  CLUS_3               2                37
D118V10, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  CLUS_1               5                50
  CLUS_2               5                86
  CLUS_3               2                20

Clustering(119) Variable = EPHA7 MUTATION ANALYSIS
D119V1, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             2               4
D119V2, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             1              12
  CLUS_3             0              12
D119V3, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              59
  CLUS_3             3              33
  CLUS_4             1              19
D119V4, multiclass
D119V5, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             0              24
  CLUS_3             3              43
D119V6, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             4              61
  CLUS_3             3              32
  CLUS_4             1              23
D119V7, multiclass
D119V8, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             4              53
  CLUS_3             4              48
D119V9, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             6              66
  CLUS_3             3              36
D119V10, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             9              82
  CLUS_3             0              22

Clustering(120) Variable = SERPINB13 MUTATION ANALYSIS
D120V1, multiclass
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774 
"SERPINB13 WILD-TYPE" 
D120V2, multiclass
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774 
"SERPINB13 WILD-TYPE" 
D120V3, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 2                  51
  CLUS_2                 2                  61
  CLUS_3                 4                  32
  CLUS_4                 1                  19
D120V4, multiclass
D120V5, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 4                  61
  CLUS_2                 2                  22
  CLUS_3                 2                  44
D120V6, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 0                  11
  CLUS_2                 2                  63
  CLUS_3                 4                  31
  CLUS_4                 2                  22
D120V7, multiclass
D120V8, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 1                  60
  CLUS_2                 3                  54
  CLUS_3                 5                  47
D120V9, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 1                  56
  CLUS_2                 4                  68
  CLUS_3                 3                  36
D120V10, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 0                  55
  CLUS_2                 6                  85
  CLUS_3                 2                  20

Clustering(121) Variable = OR13G1 MUTATION ANALYSIS
D121V1, multiclass
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3770 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D121V2, multiclass
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3770 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D121V3, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              3               60
  CLUS_3              3               33
  CLUS_4              1               19
D121V4, multiclass
D121V5, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              5               41
D121V6, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               64
  CLUS_3              5               30
  CLUS_4              0               24
D121V7, multiclass
D121V8, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              3               54
  CLUS_3              5               47
D121V9, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              4               68
  CLUS_3              3               36
D121V10, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(122) Variable = CDH18 MUTATION ANALYSIS
D122V1, multiclass
[1] "Remove cluster labels:" "CDH18 MUTATED"         
clus
  CDH18 MUTATED CDH18 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
D122V2, multiclass
[1] "Remove cluster labels:" "CDH18 MUTATED"         
clus
  CDH18 MUTATED CDH18 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
D122V3, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             9              44
  CLUS_2             4              59
  CLUS_3             5              31
  CLUS_4             4              16
D122V4, multiclass
D122V5, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             8              57
  CLUS_2             0              24
  CLUS_3             9              37
D122V6, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             9              56
  CLUS_3             8              27
  CLUS_4             0              24
D122V7, multiclass
D122V8, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              60
  CLUS_2            13              44
  CLUS_3             8              44
D122V9, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             3              54
  CLUS_2            12              60
  CLUS_3             6              33
D122V10, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             3              52
  CLUS_2            16              75
  CLUS_3             2              20

Clustering(123) Variable = CTNNA2 MUTATION ANALYSIS
D123V1, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              2                7
  CLUS_3              0               12
  CLUS_4              0                6
D123V2, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               12
  CLUS_3              1               11
D123V3, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              7               46
  CLUS_2              6               57
  CLUS_3              5               31
  CLUS_4              2               18
D123V4, multiclass
D123V5, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              9               56
  CLUS_2              1               23
  CLUS_3              5               41
D123V6, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              9               56
  CLUS_3              4               31
  CLUS_4              1               23
D123V7, multiclass
D123V8, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              4               57
  CLUS_2             10               47
  CLUS_3              6               46
D123V9, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              6               51
  CLUS_2             12               60
  CLUS_3              2               37
D123V10, multiclass
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CLUS_1              6               49
  CLUS_2             13               78
  CLUS_3              1               21

Clustering(124) Variable = OR5T2 MUTATION ANALYSIS
D124V1, multiclass
[1] "Remove cluster labels:" "OR5T2 MUTATED"         
clus
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3771 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
D124V2, multiclass
[1] "Remove cluster labels:" "OR5T2 MUTATED"         
clus
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3771 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
D124V3, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              61
  CLUS_3             1              35
  CLUS_4             3              17
D124V4, multiclass
D124V5, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             3              62
  CLUS_2             0              24
  CLUS_3             2              44
D124V6, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             2              33
  CLUS_4             0              24
D124V7, multiclass
D124V8, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             2              55
  CLUS_3             3              49
D124V9, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             2              70
  CLUS_3             3              36
D124V10, multiclass
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             3              88
  CLUS_3             2              20

Clustering(125) Variable = APCS MUTATION ANALYSIS
D125V1, multiclass
[1] "Remove cluster labels:" "APCS MUTATED"          
clus
  APCS MUTATED APCS WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
D125V2, multiclass
[1] "Remove cluster labels:" "APCS MUTATED"          
clus
  APCS MUTATED APCS WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
D125V3, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            0             53
  CLUS_2            0             63
  CLUS_3            1             35
  CLUS_4            3             17
D125V4, multiclass
D125V5, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            2             63
  CLUS_2            0             24
  CLUS_3            1             45
D125V6, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            0             11
  CLUS_2            1             64
  CLUS_3            1             34
  CLUS_4            1             23
D125V7, multiclass
D125V8, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            0             61
  CLUS_2            1             56
  CLUS_3            3             49
D125V9, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            0             57
  CLUS_2            2             70
  CLUS_3            2             37
D125V10, multiclass
        clus
vv       APCS MUTATED APCS WILD-TYPE
  CLUS_1            0             55
  CLUS_2            4             87
  CLUS_3            0             22

Clustering(126) Variable = IFNA7 MUTATION ANALYSIS
D126V1, multiclass
[1] "Remove cluster labels:" "IFNA7 MUTATED"         
clus
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
D126V2, multiclass
[1] "Remove cluster labels:" "IFNA7 MUTATED"         
clus
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
D126V3, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             2              61
  CLUS_3             0              36
  CLUS_4             2              18
D126V4, multiclass
D126V5, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             1              23
  CLUS_3             0              46
D126V6, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              64
  CLUS_3             1              34
  CLUS_4             1              23
D126V7, multiclass
D126V8, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             0              57
  CLUS_3             3              49
D126V9, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             4              68
  CLUS_3             1              38
D126V10, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              55
  CLUS_2             4              87
  CLUS_3             1              21

Clustering(127) Variable = UGT2B10 MUTATION ANALYSIS
D127V1, multiclass
[1] "Remove cluster labels:" "UGT2B10 MUTATED"       
clus
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
D127V2, multiclass
[1] "Remove cluster labels:" "UGT2B10 MUTATED"       
clus
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
D127V3, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               4                59
  CLUS_3               3                33
  CLUS_4               2                18
D127V4, multiclass
D127V5, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               2                63
  CLUS_2               2                22
  CLUS_3               3                43
D127V6, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                63
  CLUS_3               2                33
  CLUS_4               3                21
D127V7, multiclass
D127V8, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               5                52
  CLUS_3               4                48
D127V9, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               3                54
  CLUS_2               7                65
  CLUS_3               1                38
D127V10, multiclass
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CLUS_1               3                52
  CLUS_2               8                83
  CLUS_3               0                22

Clustering(128) Variable = PPP3CA MUTATION ANALYSIS
D128V1, multiclass
D128V2, multiclass
D128V3, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               52
  CLUS_2              1               62
  CLUS_3              1               35
  CLUS_4              0               20
D128V4, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              102 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6831 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D128V5, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              1               45
D128V6, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               10
  CLUS_2              0               65
  CLUS_3              1               34
  CLUS_4              1               23
D128V7, multiclass
D128V8, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               60
  CLUS_2              1               56
  CLUS_3              1               51
D128V9, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               56
  CLUS_2              2               70
  CLUS_3              0               39
D128V10, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               54
  CLUS_2              2               89
  CLUS_3              0               22

Clustering(129) Variable = TBX5 MUTATION ANALYSIS
D129V1, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            0              6
D129V2, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2             11
  CLUS_3            2             10
D129V3, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            3             60
  CLUS_3            2             34
  CLUS_4            3             17
D129V4, multiclass
D129V5, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            5             60
  CLUS_2            1             23
  CLUS_3            3             43
D129V6, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            6             59
  CLUS_3            1             34
  CLUS_4            2             22
D129V7, multiclass
D129V8, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            4             57
  CLUS_2            4             53
  CLUS_3            3             49
D129V9, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            5             52
  CLUS_2            5             67
  CLUS_3            1             38
D129V10, multiclass
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  CLUS_1            4             51
  CLUS_2            5             86
  CLUS_3            2             20

Clustering(130) Variable = VN1R2 MUTATION ANALYSIS
D130V1, multiclass
D130V2, multiclass
D130V3, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             0              63
  CLUS_3             3              33
  CLUS_4             2              18
D130V4, multiclass
D130V5, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             3              43
D130V6, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             3              32
  CLUS_4             0              24
D130V7, multiclass
D130V8, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             2              55
  CLUS_3             5              47
D130V9, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             4              68
  CLUS_3             1              38
D130V10, multiclass
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             5              86
  CLUS_3             0              22

Clustering(131) Variable = ADAMTS18 MUTATION ANALYSIS
D131V1, multiclass
[1] "Remove cluster labels:" "ADAMTS18 MUTATED"      
clus
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-44-2655 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3398 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3774 
"ADAMTS18 WILD-TYPE" 
D131V2, multiclass
[1] "Remove cluster labels:" "ADAMTS18 MUTATED"      
clus
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-44-2655 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3398 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3774 
"ADAMTS18 WILD-TYPE" 
D131V3, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                5                 48
  CLUS_2                7                 56
  CLUS_3                4                 32
  CLUS_4                1                 19
D131V4, multiclass
D131V5, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                6                 59
  CLUS_2                1                 23
  CLUS_3                4                 42
D131V6, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                5                 60
  CLUS_3                3                 32
  CLUS_4                2                 22
D131V7, multiclass
D131V8, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                4                 57
  CLUS_2                4                 53
  CLUS_3                9                 43
D131V9, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                1                 56
  CLUS_2               11                 61
  CLUS_3                5                 34
D131V10, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                1                 54
  CLUS_2               15                 76
  CLUS_3                1                 21

Clustering(132) Variable = PSG6 MUTATION ANALYSIS
D132V1, multiclass
D132V2, multiclass
D132V3, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            6             57
  CLUS_3            1             35
  CLUS_4            2             18
D132V4, multiclass
D132V5, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            3             62
  CLUS_2            1             23
  CLUS_3            3             43
D132V6, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             63
  CLUS_3            3             32
  CLUS_4            2             22
D132V7, multiclass
D132V8, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            5             56
  CLUS_2            4             53
  CLUS_3            2             50
D132V9, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            7             65
  CLUS_3            1             38
D132V10, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            8             83
  CLUS_3            1             21

Clustering(133) Variable = CCDC73 MUTATION ANALYSIS
D133V1, multiclass
[1] "Remove cluster labels:" "CCDC73 MUTATED"        
clus
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
D133V2, multiclass
[1] "Remove cluster labels:" "CCDC73 MUTATED"        
clus
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
D133V3, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              5               48
  CLUS_2              2               61
  CLUS_3              0               36
  CLUS_4              4               16
D133V4, multiclass
D133V5, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              1               23
  CLUS_3              3               43
D133V6, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               60
  CLUS_3              3               32
  CLUS_4              1               23
D133V7, multiclass
D133V8, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              4               53
  CLUS_3              3               49
D133V9, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              6               66
  CLUS_3              3               36
D133V10, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              8               83
  CLUS_3              0               22

Clustering(134) Variable = OR10G8 MUTATION ANALYSIS
D134V1, multiclass
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D134V2, multiclass
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D134V3, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              0               20
D134V4, multiclass
D134V5, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              0               24
  CLUS_3              5               41
D134V6, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              2               33
  CLUS_4              0               24
D134V7, multiclass
D134V8, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              2               50
D134V9, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              2               70
  CLUS_3              3               36
D134V10, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              4               87
  CLUS_3              1               21

Clustering(135) Variable = OR51I1 MUTATION ANALYSIS
D135V1, multiclass
[1] "Remove cluster labels:" "OR51I1 MUTATED"        
clus
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
D135V2, multiclass
[1] "Remove cluster labels:" "OR51I1 MUTATED"        
clus
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
D135V3, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              1               62
  CLUS_3              1               35
  CLUS_4              2               18
D135V4, multiclass
D135V5, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              3               43
D135V6, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              2               33
  CLUS_4              0               24
D135V7, multiclass
D135V8, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              0               61
  CLUS_2              4               53
  CLUS_3              2               50
D135V9, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              3               69
  CLUS_3              2               37
D135V10, multiclass
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              4               87
  CLUS_3              1               21

Clustering(136) Variable = GPR101 MUTATION ANALYSIS
D136V1, multiclass
[1] "Remove cluster labels:" "GPR101 MUTATED"        
clus
  GPR101 MUTATED GPR101 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
D136V2, multiclass
[1] "Remove cluster labels:" "GPR101 MUTATED"        
clus
  GPR101 MUTATED GPR101 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
D136V3, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              1               62
  CLUS_3              3               33
  CLUS_4              2               18
D136V4, multiclass
D136V5, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              1               23
  CLUS_3              1               45
D136V6, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              4               61
  CLUS_3              1               34
  CLUS_4              1               23
D136V7, multiclass
D136V8, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              4               48
D136V9, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              4               68
  CLUS_3              2               37
D136V10, multiclass
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              6               85
  CLUS_3              0               22

Clustering(137) Variable = IRX1 MUTATION ANALYSIS
D137V1, multiclass
[1] "Remove cluster labels:" "IRX1 MUTATED"          
clus
  IRX1 MUTATED IRX1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
D137V2, multiclass
[1] "Remove cluster labels:" "IRX1 MUTATED"          
clus
  IRX1 MUTATED IRX1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
D137V3, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            5             48
  CLUS_2            0             63
  CLUS_3            1             35
  CLUS_4            1             19
D137V4, multiclass
D137V5, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            5             60
  CLUS_2            0             24
  CLUS_3            1             45
D137V6, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            5             60
  CLUS_3            1             34
  CLUS_4            0             24
D137V7, multiclass
D137V8, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            3             54
  CLUS_3            3             49
D137V9, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            3             54
  CLUS_2            4             68
  CLUS_3            0             39
D137V10, multiclass
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            4             87
  CLUS_3            0             22

Clustering(138) Variable = STAC3 MUTATION ANALYSIS
D138V1, multiclass
D138V2, multiclass
D138V3, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             2              61
  CLUS_3             1              35
  CLUS_4             0              20
D138V4, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             102 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
D138V5, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             0              24
  CLUS_3             1              45
D138V6, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              64
  CLUS_3             1              34
  CLUS_4             1              23
D138V7, multiclass
D138V8, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              56
  CLUS_3             0              52
D138V9, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              57
  CLUS_2             3              69
  CLUS_3             0              39
D138V10, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              55
  CLUS_2             3              88
  CLUS_3             0              22

Clustering(139) Variable = BCHE MUTATION ANALYSIS
D139V1, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            1              4
  CLUS_2            3              6
  CLUS_3            0             12
  CLUS_4            0              6
D139V2, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            0              7
  CLUS_2            0             13
  CLUS_3            4              8
D139V3, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            2             51
  CLUS_2            5             58
  CLUS_3            2             34
  CLUS_4            0             20
D139V4, multiclass
D139V5, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            1             64
  CLUS_2            1             23
  CLUS_3            5             41
D139V6, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             62
  CLUS_3            3             32
  CLUS_4            1             23
D139V7, multiclass
D139V8, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            2             59
  CLUS_2            5             52
  CLUS_3            2             50
D139V9, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             53
  CLUS_2            3             69
  CLUS_3            2             37
D139V10, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             51
  CLUS_2            5             86
  CLUS_3            0             22

Clustering(140) Variable = CNGA2 MUTATION ANALYSIS
D140V1, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             2               4
D140V2, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              13
  CLUS_3             1              11
D140V3, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             4              59
  CLUS_3             2              34
  CLUS_4             0              20
D140V4, multiclass
D140V5, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             1              23
  CLUS_3             4              42
D140V6, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             3              32
  CLUS_4             2              22
D140V7, multiclass
D140V8, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             4              53
  CLUS_3             4              48
D140V9, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             6              66
  CLUS_3             3              36
D140V10, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             9              82
  CLUS_3             1              21

Clustering(141) Variable = FTSJD1 MUTATION ANALYSIS
D141V1, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D141V2, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D141V3, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              3               60
  CLUS_3              0               36
  CLUS_4              1               19
D141V4, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2              102 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6831 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D141V5, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              2               22
  CLUS_3              3               43
D141V6, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              0               65
  CLUS_3              3               32
  CLUS_4              3               21
D141V7, multiclass
D141V8, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              4               53
  CLUS_3              1               51
D141V9, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              3               69
  CLUS_3              1               38
D141V10, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              3               88
  CLUS_3              1               21

Clustering(142) Variable = MAGEC2 MUTATION ANALYSIS
D142V1, multiclass
[1] "Remove cluster labels:" "MAGEC2 MUTATED"        
clus
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
D142V2, multiclass
[1] "Remove cluster labels:" "MAGEC2 MUTATED"        
clus
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
D142V3, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              2               61
  CLUS_3              3               33
  CLUS_4              2               18
D142V4, multiclass
D142V5, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              6               59
  CLUS_2              1               23
  CLUS_3              1               45
D142V6, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               60
  CLUS_3              1               34
  CLUS_4              2               22
D142V7, multiclass
D142V8, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              4               53
  CLUS_3              2               50
D142V9, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              3               54
  CLUS_2              3               69
  CLUS_3              2               37
D142V10, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              6               85
  CLUS_3              1               21

Clustering(143) Variable = OR10T2 MUTATION ANALYSIS
D143V1, multiclass
[1] "Remove cluster labels:" "OR10T2 MUTATED"        
clus
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1594       TCGA-55-1595 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
D143V2, multiclass
[1] "Remove cluster labels:" "OR10T2 MUTATED"        
clus
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1594       TCGA-55-1595 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
D143V3, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               61
  CLUS_3              2               34
  CLUS_4              1               19
D143V4, multiclass
D143V5, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               24
  CLUS_3              2               44
D143V6, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               64
  CLUS_3              2               33
  CLUS_4              0               24
D143V7, multiclass
D143V8, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              0               57
  CLUS_3              6               46
D143V9, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              5               67
  CLUS_3              1               38
D143V10, multiclass
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              6               85
  CLUS_3              0               22

Clustering(144) Variable = OR4L1 MUTATION ANALYSIS
D144V1, multiclass
[1] "Remove cluster labels:" "OR4L1 MUTATED"         
clus
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
D144V2, multiclass
[1] "Remove cluster labels:" "OR4L1 MUTATED"         
clus
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
D144V3, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             1              62
  CLUS_3             3              33
  CLUS_4             1              19
D144V4, multiclass
D144V5, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             0              24
  CLUS_3             2              44
D144V6, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             2              33
  CLUS_4             1              23
D144V7, multiclass
D144V8, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             5              52
  CLUS_3             1              51
D144V9, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             0              39
D144V10, multiclass
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             5              86
  CLUS_3             0              22

Clustering(145) Variable = RIT2 MUTATION ANALYSIS
D145V1, multiclass
D145V2, multiclass
D145V3, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            2             61
  CLUS_3            1             35
  CLUS_4            0             20
D145V4, multiclass
D145V5, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            1             64
  CLUS_2            1             23
  CLUS_3            1             45
D145V6, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            0             65
  CLUS_3            1             34
  CLUS_4            2             22
D145V7, multiclass
D145V8, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            1             56
  CLUS_3            1             51
D145V9, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            0             57
  CLUS_2            1             71
  CLUS_3            2             37
D145V10, multiclass
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  CLUS_1            0             55
  CLUS_2            3             88
  CLUS_3            0             22

Clustering(146) Variable = OR2T8 MUTATION ANALYSIS
D146V1, multiclass
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D146V2, multiclass
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D146V3, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             4              59
  CLUS_3             0              36
  CLUS_4             0              20
D146V4, multiclass
D146V5, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             0              24
  CLUS_3             2              44
D146V6, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             2              33
  CLUS_4             0              24
D146V7, multiclass
D146V8, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             4              53
  CLUS_3             1              51
D146V9, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             5              67
  CLUS_3             1              38
D146V10, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  CLUS_1             0              55
  CLUS_2             5              86
  CLUS_3             2              20

Clustering(147) Variable = NPFFR2 MUTATION ANALYSIS
D147V1, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              0                9
  CLUS_3              3                9
  CLUS_4              0                6
D147V2, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              3               10
  CLUS_3              0               12
D147V3, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              4               59
  CLUS_3              1               35
  CLUS_4              2               18
D147V4, multiclass
D147V5, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              2               63
  CLUS_2              2               22
  CLUS_3              2               44
D147V6, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              2                9
  CLUS_2              1               64
  CLUS_3              2               33
  CLUS_4              1               23
D147V7, multiclass
D147V8, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              4               53
  CLUS_3              2               50
D147V9, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              6               51
  CLUS_2              1               71
  CLUS_3              2               37
D147V10, multiclass
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CLUS_1              6               49
  CLUS_2              2               89
  CLUS_3              1               21

Clustering(148) Variable = CHM MUTATION ANALYSIS
D148V1, multiclass
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1            31 
   TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774 
"CHM WILD-TYPE" 
D148V2, multiclass
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1            31 
   TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774 
"CHM WILD-TYPE" 
D148V3, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           1            52
  CLUS_2           2            61
  CLUS_3           3            33
  CLUS_4           0            20
D148V4, multiclass
D148V5, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2            63
  CLUS_2           0            24
  CLUS_3           2            44
D148V6, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           1            10
  CLUS_2           2            63
  CLUS_3           1            34
  CLUS_4           0            24
D148V7, multiclass
D148V8, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2            59
  CLUS_2           3            54
  CLUS_3           1            51
D148V9, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2            55
  CLUS_2           2            70
  CLUS_3           1            38
D148V10, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           1            54
  CLUS_2           3            88
  CLUS_3           1            21

Clustering(149) Variable = OR4D10 MUTATION ANALYSIS
D149V1, multiclass
D149V2, multiclass
D149V3, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               61
  CLUS_3              1               35
  CLUS_4              0               20
D149V4, multiclass
D149V5, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              4               61
  CLUS_2              0               24
  CLUS_3              1               45
D149V6, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              1               34
  CLUS_4              1               23
D149V7, multiclass
D149V8, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              3               54
  CLUS_3              0               52
D149V9, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              4               68
  CLUS_3              0               39
D149V10, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              4               87
  CLUS_3              0               22

Clustering(150) Variable = OR5D13 MUTATION ANALYSIS
D150V1, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D150V2, multiclass
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D150V3, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              1               62
  CLUS_3              1               35
  CLUS_4              0               20
D150V4, multiclass
D150V5, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              0               24
  CLUS_3              3               43
D150V6, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              0               35
  CLUS_4              0               24
D150V7, multiclass
D150V8, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              3               54
  CLUS_3              0               52
D150V9, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              1               71
  CLUS_3              1               38
D150V10, multiclass
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              1               90
  CLUS_3              1               21

Clustering(151) Variable = FOXI1 MUTATION ANALYSIS
D151V1, multiclass
[1] "Remove cluster labels:" "FOXI1 MUTATED"         
clus
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
D151V2, multiclass
[1] "Remove cluster labels:" "FOXI1 MUTATED"         
clus
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
D151V3, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             2              34
  CLUS_4             0              20
D151V4, multiclass
D151V5, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             2              22
  CLUS_3             3              43
D151V6, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              61
  CLUS_3             2              33
  CLUS_4             1              23
D151V7, multiclass
D151V8, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             3              54
  CLUS_3             3              49
D151V9, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             1              38
D151V10, multiclass
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             5              86
  CLUS_3             1              21

Clustering(152) Variable = FAM47B MUTATION ANALYSIS
D152V1, multiclass
[1] "Remove cluster labels:" "FAM47B MUTATED"        
clus
  FAM47B MUTATED FAM47B WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
D152V2, multiclass
[1] "Remove cluster labels:" "FAM47B MUTATED"        
clus
  FAM47B MUTATED FAM47B WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
D152V3, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              5               48
  CLUS_2              3               60
  CLUS_3              6               30
  CLUS_4              0               20
D152V4, multiclass
D152V5, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              6               59
  CLUS_2              0               24
  CLUS_3              2               44
D152V6, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              2                9
  CLUS_2              5               60
  CLUS_3              1               34
  CLUS_4              0               24
D152V7, multiclass
D152V8, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              3               58
  CLUS_2              7               50
  CLUS_3              4               48
D152V9, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              6               51
  CLUS_2              6               66
  CLUS_3              2               37
D152V10, multiclass
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  CLUS_1              5               50
  CLUS_2              8               83
  CLUS_3              1               21

Clustering(153) Variable = OR5K3 MUTATION ANALYSIS
D153V1, multiclass
[1] "Remove cluster labels:" "OR5K3 MUTATED"         
clus
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
D153V2, multiclass
[1] "Remove cluster labels:" "OR5K3 MUTATED"         
clus
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
D153V3, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             4              59
  CLUS_3             0              36
  CLUS_4             2              18
D153V4, multiclass
D153V5, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             6              59
  CLUS_2             0              24
  CLUS_3             1              45
D153V6, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             5              60
  CLUS_3             1              34
  CLUS_4             0              24
D153V7, multiclass
D153V8, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             2              55
  CLUS_3             4              48
D153V9, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             6              66
  CLUS_3             0              39
D153V10, multiclass
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             6              85
  CLUS_3             0              22

Clustering(154) Variable = HOXB3 MUTATION ANALYSIS
D154V1, multiclass
[1] "Remove cluster labels:" "HOXB3 MUTATED"         
clus
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
D154V2, multiclass
[1] "Remove cluster labels:" "HOXB3 MUTATED"         
clus
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
D154V3, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             3              60
  CLUS_3             3              33
  CLUS_4             1              19
D154V4, multiclass
D154V5, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              23
  CLUS_3             4              42
D154V6, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              63
  CLUS_3             2              33
  CLUS_4             1              23
D154V7, multiclass
D154V8, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             2              55
  CLUS_3             6              46
D154V9, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             5              67
  CLUS_3             2              37
D154V10, multiclass
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             6              85
  CLUS_3             1              21

Clustering(155) Variable = PTN MUTATION ANALYSIS
D155V1, multiclass
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4123 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
D155V2, multiclass
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4123 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
D155V3, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           1            52
  CLUS_2           0            63
  CLUS_3           2            34
  CLUS_4           1            19
D155V4, multiclass
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2           102 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4433    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-6178    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-4679    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6207 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6829 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835 
"PTN WILD-TYPE" "PTN WILD-TYPE" 
D155V5, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           2            63
  CLUS_2           0            24
  CLUS_3           2            44
D155V6, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           0            11
  CLUS_2           3            62
  CLUS_3           1            34
  CLUS_4           0            24
D155V7, multiclass
D155V8, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           1            60
  CLUS_2           2            55
  CLUS_3           1            51
D155V9, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           2            55
  CLUS_2           2            70
  CLUS_3           0            39
D155V10, multiclass
        clus
vv       PTN MUTATED PTN WILD-TYPE
  CLUS_1           2            53
  CLUS_2           2            89
  CLUS_3           0            22

Clustering(156) Variable = SAMD7 MUTATION ANALYSIS
D156V1, multiclass
D156V2, multiclass
D156V3, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             1              62
  CLUS_3             2              34
  CLUS_4             2              18
D156V4, multiclass
D156V5, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             1              23
  CLUS_3             2              44
D156V6, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             0              65
  CLUS_3             3              32
  CLUS_4             1              23
D156V7, multiclass
D156V8, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             0              61
  CLUS_2             1              56
  CLUS_3             5              47
D156V9, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             5              67
  CLUS_3             0              39
D156V10, multiclass
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             5              86
  CLUS_3             0              22

Clustering(157) Variable = BIRC8 MUTATION ANALYSIS
D157V1, multiclass
[1] "Remove cluster labels:" "BIRC8 MUTATED"         
clus
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
D157V2, multiclass
[1] "Remove cluster labels:" "BIRC8 MUTATED"         
clus
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
D157V3, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              61
  CLUS_3             1              35
  CLUS_4             1              19
D157V4, multiclass
D157V5, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             2              22
  CLUS_3             0              46
D157V6, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             1              34
  CLUS_4             1              23
D157V7, multiclass
D157V8, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             2              55
  CLUS_3             2              50
D157V9, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             0              72
  CLUS_3             2              37
D157V10, multiclass
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             2              89
  CLUS_3             1              21

Clustering(158) Variable = OR51A7 MUTATION ANALYSIS
D158V1, multiclass
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
D158V2, multiclass
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
D158V3, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              0               63
  CLUS_3              2               34
  CLUS_4              1               19
D158V4, multiclass
D158V5, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              0               24
  CLUS_3              1               45
D158V6, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               61
  CLUS_3              0               35
  CLUS_4              0               24
D158V7, multiclass
D158V8, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              3               54
  CLUS_3              1               51
D158V9, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              5               67
  CLUS_3              1               38
D158V10, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              4               87
  CLUS_3              1               21

Clustering(159) Variable = TYR MUTATION ANALYSIS
D159V1, multiclass
[1] "Remove cluster labels:" "TYR MUTATED"           
clus
  TYR MUTATED TYR WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
D159V2, multiclass
[1] "Remove cluster labels:" "TYR MUTATED"           
clus
  TYR MUTATED TYR WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
D159V3, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           2            51
  CLUS_2           5            58
  CLUS_3           1            35
  CLUS_4           2            18
D159V4, multiclass
D159V5, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           5            60
  CLUS_2           1            23
  CLUS_3           4            42
D159V6, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           0            11
  CLUS_2           6            59
  CLUS_3           3            32
  CLUS_4           1            23
D159V7, multiclass
D159V8, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           2            59
  CLUS_2           5            52
  CLUS_3           2            50
D159V9, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           2            55
  CLUS_2           7            65
  CLUS_3           1            38
D159V10, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  CLUS_1           2            53
  CLUS_2           8            83
  CLUS_3           0            22

Clustering(160) Variable = TGFB2 MUTATION ANALYSIS
D160V1, multiclass
[1] "Remove cluster labels:" "TGFB2 MUTATED"         
clus
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
D160V2, multiclass
[1] "Remove cluster labels:" "TGFB2 MUTATED"         
clus
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
D160V3, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             3              60
  CLUS_3             1              35
  CLUS_4             1              19
D160V4, multiclass
D160V5, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             4              61
  CLUS_2             0              24
  CLUS_3             1              45
D160V6, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             1              64
  CLUS_3             1              34
  CLUS_4             1              23
D160V7, multiclass
D160V8, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             2              55
  CLUS_3             3              49
D160V9, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             3              69
  CLUS_3             0              39
D160V10, multiclass
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             3              88
  CLUS_3             0              22

Clustering(161) Variable = GPR158 MUTATION ANALYSIS
D161V1, multiclass
[1] "Remove cluster labels:" "GPR158 MUTATED"        
clus
  GPR158 MUTATED GPR158 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
D161V2, multiclass
[1] "Remove cluster labels:" "GPR158 MUTATED"        
clus
  GPR158 MUTATED GPR158 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
D161V3, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              7               46
  CLUS_2              2               61
  CLUS_3              7               29
  CLUS_4              2               18
D161V4, multiclass
D161V5, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              2               22
  CLUS_3              6               40
D161V6, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              6               59
  CLUS_3              6               29
  CLUS_4              0               24
D161V7, multiclass
D161V8, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              0               61
  CLUS_2             12               45
  CLUS_3              5               47
D161V9, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               55
  CLUS_2             12               60
  CLUS_3              4               35
D161V10, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               53
  CLUS_2             15               76
  CLUS_3              1               21

Clustering(162) Variable = MTTP MUTATION ANALYSIS
D162V1, multiclass
[1] "Remove cluster labels:" "MTTP MUTATED"          
clus
  MTTP MUTATED MTTP WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" 
D162V2, multiclass
[1] "Remove cluster labels:" "MTTP MUTATED"          
clus
  MTTP MUTATED MTTP WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" 
D162V3, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            1             52
  CLUS_2            5             58
  CLUS_3            0             36
  CLUS_4            0             20
D162V4, multiclass
D162V5, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             61
  CLUS_2            0             24
  CLUS_3            1             45
D162V6, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             62
  CLUS_3            1             34
  CLUS_4            1             23
D162V7, multiclass
D162V8, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             57
  CLUS_2            1             56
  CLUS_3            1             51
D162V9, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             53
  CLUS_2            2             70
  CLUS_3            0             39
D162V10, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             51
  CLUS_2            2             89
  CLUS_3            0             22

Clustering(163) Variable = COL25A1 MUTATION ANALYSIS
D163V1, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               0                12
  CLUS_4               0                 6
D163V2, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                12
  CLUS_3               2                10
D163V3, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               4                49
  CLUS_2               4                59
  CLUS_3               3                33
  CLUS_4               0                20
D163V4, multiclass
D163V5, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               5                60
  CLUS_2               2                22
  CLUS_3               1                45
D163V6, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               5                60
  CLUS_3               0                35
  CLUS_4               3                21
D163V7, multiclass
D163V8, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               4                57
  CLUS_2               4                53
  CLUS_3               3                49
D163V9, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               4                53
  CLUS_2               5                67
  CLUS_3               2                37
D163V10, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               4                51
  CLUS_2               6                85
  CLUS_3               1                21

Clustering(164) Variable = RB1 MUTATION ANALYSIS
D164V1, multiclass
D164V2, multiclass
D164V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            51
  CLUS_2           2            61
  CLUS_3           1            35
  CLUS_4           2            18
D164V4, multiclass
D164V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            60
  CLUS_2           0            24
  CLUS_3           1            45
D164V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            10
  CLUS_2           4            61
  CLUS_3           1            34
  CLUS_4           0            24
D164V7, multiclass
D164V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            60
  CLUS_2           1            56
  CLUS_3           5            47
D164V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            56
  CLUS_2           4            68
  CLUS_3           2            37
D164V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            55
  CLUS_2           6            85
  CLUS_3           1            21

Clustering(165) Variable = CYLC1 MUTATION ANALYSIS
D165V1, multiclass
[1] "Remove cluster labels:" "CYLC1 MUTATED"         
clus
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
D165V2, multiclass
[1] "Remove cluster labels:" "CYLC1 MUTATED"         
clus
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
D165V3, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              60
  CLUS_3             1              35
  CLUS_4             0              20
D165V4, multiclass
D165V5, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             2              22
  CLUS_3             3              43
D165V6, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              64
  CLUS_3             2              33
  CLUS_4             2              22
D165V7, multiclass
D165V8, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             2              55
  CLUS_3             2              50
D165V9, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             3              54
  CLUS_2             1              71
  CLUS_3             2              37
D165V10, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              53
  CLUS_2             2              89
  CLUS_3             2              20

Clustering(166) Variable = CYP4V2 MUTATION ANALYSIS
D166V1, multiclass
D166V2, multiclass
D166V3, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              2               61
  CLUS_3              0               36
  CLUS_4              0               20
D166V4, multiclass
D166V5, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              5               60
  CLUS_2              0               24
  CLUS_3              0               46
D166V6, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              0               35
  CLUS_4              2               22
D166V7, multiclass
D166V8, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              3               58
  CLUS_2              2               55
  CLUS_3              1               51
D166V9, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               55
  CLUS_2              3               69
  CLUS_3              1               38
D166V10, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               53
  CLUS_2              4               87
  CLUS_3              0               22

Clustering(167) Variable = FGF14 MUTATION ANALYSIS
D167V1, multiclass
[1] "Remove cluster labels:" "FGF14 MUTATED"         
clus
  FGF14 MUTATED FGF14 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
D167V2, multiclass
[1] "Remove cluster labels:" "FGF14 MUTATED"         
clus
  FGF14 MUTATED FGF14 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
D167V3, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              61
  CLUS_3             2              34
  CLUS_4             1              19
D167V4, multiclass
D167V5, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             3              62
  CLUS_2             1              23
  CLUS_3             1              45
D167V6, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              63
  CLUS_3             1              34
  CLUS_4             2              22
D167V7, multiclass
D167V8, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             1              60
  CLUS_2             4              53
  CLUS_3             1              51
D167V9, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             1              56
  CLUS_2             5              67
  CLUS_3             1              38
D167V10, multiclass
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             6              85
  CLUS_3             0              22

Clustering(168) Variable = GC MUTATION ANALYSIS
D168V1, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2655   TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-3398   TCGA-44-3918 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
D168V2, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2655   TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-3398   TCGA-44-3918 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
D168V3, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           53
  CLUS_2          3           60
  CLUS_3          1           35
  CLUS_4          1           19
D168V4, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2          102 
  TCGA-05-4384   TCGA-05-4390   TCGA-05-4405   TCGA-05-4410   TCGA-05-4415 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4417   TCGA-05-4424   TCGA-05-4425   TCGA-05-4427   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-5375   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-5643   TCGA-44-5645   TCGA-44-6144   TCGA-44-6145   TCGA-44-6146 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6147   TCGA-44-6148   TCGA-44-6774   TCGA-44-6775   TCGA-44-6776 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6777   TCGA-44-6778   TCGA-44-6779   TCGA-49-4487   TCGA-49-4488 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4490   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-49-6767   TCGA-50-5044   TCGA-50-5045 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5049   TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5072   TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5935   TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5944   TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6593   TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-5899 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6543   TCGA-55-6642   TCGA-55-6712   TCGA-64-5774   TCGA-64-5775 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5778   TCGA-64-5781   TCGA-64-5815   TCGA-67-4679   TCGA-67-6215 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658   TCGA-73-4676 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-5122   TCGA-75-5125   TCGA-75-5126   TCGA-75-5146   TCGA-75-5147 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-6203   TCGA-75-6205   TCGA-75-6207   TCGA-75-6211   TCGA-75-6212 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-80-5611   TCGA-86-6562   TCGA-91-6828   TCGA-91-6829   TCGA-91-6831 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" 
D168V5, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          2           63
  CLUS_2          1           23
  CLUS_3          2           44
D168V6, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           11
  CLUS_2          2           63
  CLUS_3          2           33
  CLUS_4          1           23
D168V7, multiclass
D168V8, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          2           59
  CLUS_2          1           56
  CLUS_3          2           50
D168V9, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           57
  CLUS_2          3           69
  CLUS_3          2           37
D168V10, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           55
  CLUS_2          4           87
  CLUS_3          1           21

Clustering(169) Variable = LCE1F MUTATION ANALYSIS
D169V1, multiclass
D169V2, multiclass
D169V3, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             1              52
  CLUS_2             3              60
  CLUS_3             0              36
  CLUS_4             0              20
D169V4, multiclass
[1] "Remove cluster labels:" "LCE1F MUTATED"         
clus
  LCE1F MUTATED LCE1F WILD-TYPE 
              2             102 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6594      TCGA-50-6595 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-75-6212      TCGA-80-5611 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-86-6562      TCGA-91-6828      TCGA-91-6829      TCGA-91-6831 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6835      TCGA-91-6836 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
D169V5, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              23
  CLUS_3             1              45
D169V6, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              64
  CLUS_3             1              34
  CLUS_4             1              23
D169V7, multiclass
D169V8, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             3              58
  CLUS_2             0              57
  CLUS_3             1              51
D169V9, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             2              55
  CLUS_2             1              71
  CLUS_3             1              38
D169V10, multiclass
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  CLUS_1             2              53
  CLUS_2             1              90
  CLUS_3             1              21

Clustering(170) Variable = RBM19 MUTATION ANALYSIS
D170V1, multiclass
[1] "Remove cluster labels:" "RBM19 MUTATED"         
clus
  RBM19 MUTATED RBM19 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3770 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
D170V2, multiclass
[1] "Remove cluster labels:" "RBM19 MUTATED"         
clus
  RBM19 MUTATED RBM19 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3770 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
D170V3, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             5              58
  CLUS_3             3              33
  CLUS_4             2              18
D170V4, multiclass
D170V5, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             7              58
  CLUS_2             2              22
  CLUS_3             2              44
D170V6, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              60
  CLUS_3             2              33
  CLUS_4             4              20
D170V7, multiclass
D170V8, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             6              51
  CLUS_3             6              46
D170V9, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             2              55
  CLUS_2             9              63
  CLUS_3             3              36
D170V10, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             2              53
  CLUS_2            11              80
  CLUS_3             1              21

Clustering(171) Variable = C2ORF51 MUTATION ANALYSIS
D171V1, multiclass
D171V2, multiclass
D171V3, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               1                62
  CLUS_3               0                36
  CLUS_4               2                18
D171V4, multiclass
D171V5, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               3                62
  CLUS_2               0                24
  CLUS_3               2                44
D171V6, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                63
  CLUS_3               2                33
  CLUS_4               1                23
D171V7, multiclass
D171V8, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               2                59
  CLUS_2               2                55
  CLUS_3               1                51
D171V9, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               2                55
  CLUS_2               3                69
  CLUS_3               0                39
D171V10, multiclass
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CLUS_1               2                53
  CLUS_2               3                88
  CLUS_3               0                22

Clustering(172) Variable = CNKSR2 MUTATION ANALYSIS
D172V1, multiclass
D172V2, multiclass
D172V3, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              5               58
  CLUS_3              1               35
  CLUS_4              1               19
D172V4, multiclass
D172V5, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              3               62
  CLUS_2              1               23
  CLUS_3              3               43
D172V6, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               64
  CLUS_3              4               31
  CLUS_4              2               22
D172V7, multiclass
D172V8, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               59
  CLUS_2              0               57
  CLUS_3              5               47
D172V9, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              1               56
  CLUS_2              4               68
  CLUS_3              3               36
D172V10, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(173) Variable = DIO2 MUTATION ANALYSIS
D173V1, multiclass
[1] "Remove cluster labels:" "DIO2 MUTATED"          
clus
  DIO2 MUTATED DIO2 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
D173V2, multiclass
[1] "Remove cluster labels:" "DIO2 MUTATED"          
clus
  DIO2 MUTATED DIO2 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
D173V3, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            1             62
  CLUS_3            3             33
  CLUS_4            1             19
D173V4, multiclass
[1] "Remove cluster labels:" "DIO2 MUTATED"          
clus
  DIO2 MUTATED DIO2 WILD-TYPE 
             1            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6777     TCGA-44-6778 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5044 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-4679 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-5147     TCGA-75-6203 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-75-6205     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
D173V5, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            2             63
  CLUS_2            2             22
  CLUS_3            0             46
D173V6, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             63
  CLUS_3            0             35
  CLUS_4            1             23
D173V7, multiclass
D173V8, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            1             60
  CLUS_2            2             55
  CLUS_3            3             49
D173V9, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            4             68
  CLUS_3            0             39
D173V10, multiclass
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            4             87
  CLUS_3            0             22

Clustering(174) Variable = FRG1 MUTATION ANALYSIS
D174V1, multiclass
[1] "Remove cluster labels:" "FRG1 MUTATED"          
clus
  FRG1 MUTATED FRG1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
D174V2, multiclass
[1] "Remove cluster labels:" "FRG1 MUTATED"          
clus
  FRG1 MUTATED FRG1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
D174V3, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            3             60
  CLUS_3            0             36
  CLUS_4            1             19
D174V4, multiclass
D174V5, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             64
  CLUS_2            0             24
  CLUS_3            2             44
D174V6, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            0             65
  CLUS_3            2             33
  CLUS_4            0             24
D174V7, multiclass
D174V8, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            2             55
  CLUS_3            2             50
D174V9, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             56
  CLUS_2            2             70
  CLUS_3            2             37
D174V10, multiclass
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  CLUS_1            1             54
  CLUS_2            3             88
  CLUS_3            1             21

Clustering(175) Variable = PIP MUTATION ANALYSIS
D175V1, multiclass
D175V2, multiclass
D175V3, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           2            51
  CLUS_2           2            61
  CLUS_3           1            35
  CLUS_4           0            20
D175V4, multiclass
D175V5, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           3            62
  CLUS_2           0            24
  CLUS_3           1            45
D175V6, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           0            11
  CLUS_2           2            63
  CLUS_3           1            34
  CLUS_4           1            23
D175V7, multiclass
D175V8, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           2            59
  CLUS_2           2            55
  CLUS_3           1            51
D175V9, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           2            55
  CLUS_2           3            69
  CLUS_3           0            39
D175V10, multiclass
        clus
vv       PIP MUTATED PIP WILD-TYPE
  CLUS_1           2            53
  CLUS_2           3            88
  CLUS_3           0            22

Clustering(176) Variable = SLITRK2 MUTATION ANALYSIS
D176V1, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               1                11
  CLUS_4               2                 4
D176V2, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               1                12
  CLUS_3               1                11
D176V3, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1              10                43
  CLUS_2               6                57
  CLUS_3               2                34
  CLUS_4               1                19
D176V4, multiclass
D176V5, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1              13                52
  CLUS_2               2                22
  CLUS_3               3                43
D176V6, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               2                 9
  CLUS_2              11                54
  CLUS_3               2                33
  CLUS_4               3                21
D176V7, multiclass
D176V8, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               5                56
  CLUS_2               7                50
  CLUS_3               7                45
D176V9, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               6                51
  CLUS_2               8                64
  CLUS_3               5                34
D176V10, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               5                50
  CLUS_2              11                80
  CLUS_3               3                19

Clustering(177) Variable = GABRA5 MUTATION ANALYSIS
D177V1, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              1                8
  CLUS_3              2               10
  CLUS_4              0                6
D177V2, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2               11
  CLUS_3              1               11
D177V3, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              4               59
  CLUS_3              3               33
  CLUS_4              0               20
D177V4, multiclass
D177V5, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              0               24
  CLUS_3              6               40
D177V6, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               62
  CLUS_3              3               32
  CLUS_4              1               23
D177V7, multiclass
D177V8, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              4               57
  CLUS_2              5               52
  CLUS_3              2               50
D177V9, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              4               53
  CLUS_2              5               67
  CLUS_3              2               37
D177V10, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              4               51
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(178) Variable = OR4A16 MUTATION ANALYSIS
D178V1, multiclass
[1] "Remove cluster labels:" "OR4A16 MUTATED"        
clus
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4122       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
D178V2, multiclass
[1] "Remove cluster labels:" "OR4A16 MUTATED"        
clus
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4122       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
D178V3, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              2               61
  CLUS_3              2               34
  CLUS_4              1               19
D178V4, multiclass
D178V5, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              1               23
  CLUS_3              3               43
D178V6, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              2               63
  CLUS_3              2               33
  CLUS_4              0               24
D178V7, multiclass
D178V8, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               60
  CLUS_2              2               55
  CLUS_3              5               47
D178V9, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              0               57
  CLUS_2              5               67
  CLUS_3              3               36
D178V10, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               54
  CLUS_2              7               84
  CLUS_3              0               22

Clustering(179) Variable = MBD1 MUTATION ANALYSIS
D179V1, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D179V2, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D179V3, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            1             62
  CLUS_3            2             34
  CLUS_4            2             18
D179V4, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2            102 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4488     TCGA-49-4490 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5044 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-75-6212     TCGA-80-5611 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-86-6562     TCGA-91-6828     TCGA-91-6829     TCGA-91-6831 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6835     TCGA-91-6836 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D179V5, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             63
  CLUS_2            0             24
  CLUS_3            3             43
D179V6, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             63
  CLUS_3            3             32
  CLUS_4            0             24
D179V7, multiclass
D179V8, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             57
  CLUS_3            4             48
D179V9, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             55
  CLUS_2            4             68
  CLUS_3            0             39
D179V10, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             53
  CLUS_2            4             87
  CLUS_3            0             22

Clustering(180) Variable = NELL1 MUTATION ANALYSIS
D180V1, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             1               5
D180V2, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             2              10
D180V3, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             8              45
  CLUS_2             2              61
  CLUS_3             3              33
  CLUS_4             1              19
D180V4, multiclass
D180V5, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             5              60
  CLUS_2             3              21
  CLUS_3             4              42
D180V6, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             7              58
  CLUS_3             3              32
  CLUS_4             2              22
D180V7, multiclass
D180V8, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             7              50
  CLUS_3             4              48
D180V9, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             5              52
  CLUS_2             5              67
  CLUS_3             3              36
D180V10, multiclass
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             7              84
  CLUS_3             2              20

Clustering(181) Variable = STXBP5L MUTATION ANALYSIS
D181V1, multiclass
[1] "Remove cluster labels:" "STXBP5L MUTATED"       
clus
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
D181V2, multiclass
[1] "Remove cluster labels:" "STXBP5L MUTATED"       
clus
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
D181V3, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                47
  CLUS_2               3                60
  CLUS_3               1                35
  CLUS_4               2                18
D181V4, multiclass
D181V5, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                60
  CLUS_2               2                22
  CLUS_3               4                42
D181V6, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                62
  CLUS_3               4                31
  CLUS_4               3                21
D181V7, multiclass
D181V8, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                56
  CLUS_2               6                51
  CLUS_3               1                51
D181V9, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               7                50
  CLUS_2               4                68
  CLUS_3               1                38
D181V10, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                49
  CLUS_2               5                86
  CLUS_3               1                21

Clustering(182) Variable = SLC10A2 MUTATION ANALYSIS
D182V1, multiclass
[1] "Remove cluster labels:" "SLC10A2 MUTATED"       
clus
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
D182V2, multiclass
[1] "Remove cluster labels:" "SLC10A2 MUTATED"       
clus
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
D182V3, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               3                50
  CLUS_2               2                61
  CLUS_3               1                35
  CLUS_4               1                19
D182V4, multiclass
D182V5, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               4                61
  CLUS_2               0                24
  CLUS_3               2                44
D182V6, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                63
  CLUS_3               3                32
  CLUS_4               0                24
D182V7, multiclass
D182V8, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               0                61
  CLUS_2               3                54
  CLUS_3               4                48
D182V9, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               1                56
  CLUS_2               4                68
  CLUS_3               2                37
D182V10, multiclass
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CLUS_1               1                54
  CLUS_2               6                85
  CLUS_3               0                22

Clustering(183) Variable = DYTN MUTATION ANALYSIS
D183V1, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1              8
  CLUS_3            1             11
  CLUS_4            1              5
D183V2, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             12
  CLUS_3            1             11
D183V3, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            3             50
  CLUS_2            3             60
  CLUS_3            2             34
  CLUS_4            2             18
D183V4, multiclass
D183V5, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            3             62
  CLUS_2            1             23
  CLUS_3            4             42
D183V6, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            0             11
  CLUS_2            4             61
  CLUS_3            2             33
  CLUS_4            2             22
D183V7, multiclass
D183V8, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            2             59
  CLUS_2            1             56
  CLUS_3            7             45
D183V9, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            2             55
  CLUS_2            4             68
  CLUS_3            4             35
D183V10, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            2             53
  CLUS_2            7             84
  CLUS_3            1             21

Clustering(184) Variable = SLITRK4 MUTATION ANALYSIS
D184V1, multiclass
[1] "Remove cluster labels:" "SLITRK4 MUTATED"       
clus
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1680        TCGA-67-3770 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
D184V2, multiclass
[1] "Remove cluster labels:" "SLITRK4 MUTATED"       
clus
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1680        TCGA-67-3770 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
D184V3, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               7                46
  CLUS_2               4                59
  CLUS_3               2                34
  CLUS_4               2                18
D184V4, multiclass
D184V5, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               6                59
  CLUS_2               1                23
  CLUS_3               6                40
D184V6, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               7                58
  CLUS_3               4                31
  CLUS_4               2                22
D184V7, multiclass
D184V8, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               3                58
  CLUS_2              10                47
  CLUS_3               2                50
D184V9, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               6                51
  CLUS_2               6                66
  CLUS_3               3                36
D184V10, multiclass
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CLUS_1               4                51
  CLUS_2               7                84
  CLUS_3               4                18
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
